These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3814#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 638 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGGTCCTCATCCCGTCGCTGGTCGTGGTGGTGGTTTCGTGAAGAAAAAAAAAATAAGTTGGAATTTCCAGCCACAGTGTTACGAAAAGGGTGTGTGAATAGTAAAGTCTGGTGTTGCGACGCATTAGAAAAAAGGAATCAGAAAGTGAAAGAAAAGTCCTCCCGTCCGGGGAGTGAGGAAGCTGCTCGCCACAAGTTGGATGCGTGTCGTCCGGGGCACTGTCGCAGCAAGTGCACAGAGCGTGTATAAAGTGTACCAAGTGTGTGTGTGTGTGTTTTTGCGTGTGTGGATGATTGTTTTTAATTTAGCAACGACGGCAAAAACAGCAGCTCCTCCTCGCAGCCGGGGGCAACCAGACAGCAGCAACCAACAATAACAGAGCAACACCATCATCATCATCATCATCACAGAGACATGGCTGACCAGAACGAGAAAATTCTTCATCGCCTGCTGCAACAGGACGGGAACAGCATTTGTGCGGATTGTGATTCGAAAAATCTAGAATGGGCCTCATACAACATCGGCATCTTCCTGTGCACCCGGTGCTGTGCGGTCCATCGCAGCATGGGTGCGCACATATCGAAAGTGAAGCATCTCAAGCTGGACAAATGG] [+] EMBL BM604226 [CCGCCCACGCGTCCGCCCACGCGTCCGGGTCCTCATCCCGTCGCTGGTCGTGGTGGTGGTTTCGTGAAGAAAAAAAAAATAAGTTGGAATTTCCAGCCACAGTGTTACGAAAAGGGTGTGTGAATAGTAAAGTCTGGTGTTGCGACGCATTAGAAAAAAGGAATCAGAAAGTGAAAGAAAAGTCCTCCCGTCCGGGGAGTGAGGAAGCTGCTCGCCACAAGTTGGATGCGTGTCGTCCGGGGCACTGTCGCAGCAAGTGCACAGAGCGTGTATAAAGTGTACCAAGTGTGTGTGTGTGTGTTTTTGCGTGTGTGGATGATTGTTTTTAATTTAGCAACGACGGCAAAAACAGCAGCTCCTCCTCGCAGCCGGGGGCAACCAGACAGCAGCAACCAACAATAACAGAGCAACACCATCATCATCATCATCATCACAGAGACATGGCTGACCAGAACGAGAAAATTCTTCATCGCCTGCTGCAACAGGACGGGAACAGCATTTGTGCGGATTGTGATTCGAAAAATCTAGAATGGGCCTCATACAACATCGGCATCTTCCTGTGCACCCGGTGCTGTGCGGTCCATCGCAGCATGGGTGCGCACATATCGAAAGTGAAGCATCTCAAGCTGGACAAATGG] consensusID : consensus_3814#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 554 fasta sequence [CCGAGAAAATGCGCGTAAATAATAAATCGCTCTGATATTTGTGCAACTTTCGACTCAATTTAGCCACGCCAAACGCAAGTGAACCTGATTTTCGTCAAGCACTTCACCACCAGACAGTGTGTACGCAAGCGAGTGTAAAGAACGTTCGCCCCAAAAATGCATAAAAAATGGCGCCGCACCAGTTTGGTCGCCCGTGAAGAATTTGTTATTGTGAACAACCAACTCCCCCCACTGCAGCGATAGTGTGTGCCGTCGTGGTCG---GTCGTCGTCGTCGTGGTCGTGGTCGTCATCCCGTCGCTGGTCGTGGTGGTGGTTTCGTGAAGAAAAAAAAAAATAAGTTGGAATTTCCAGCCACAGTGTTACGAAAAGGGTGTGTGAATAGTAAAGTCTGGTGTTGCGACGCATTATAAAAAAAGGAATCAGAAAGTGAAAGAAAAGTCCTCCCGTCCGGGGAGTGAGGAAGCTGCTCGCCACAAGTTGGATGCGTGTCGTCCGGGGGCACTGTCGCAGCAAGTGCACAGAGCGTGTATAAAGTGTACCAAGTGTGTGTCTGT] [+] EMBL BM614075 [CCGAGAAAATGCGCGTAAATAATAAATCGCTCTGATATTTGTGCAACTTTCGACTCAATTTAGCCACGCCAAACGCAAGTGAACCTGATTTTCGTCAAGCACTTCACCACCAGACAGTGTGTACGCAAGCGAGTGTAAAGAACGTTCGCCCCAAAAATGCATAAAAAATGGCGCCGCACCAGTTTGGTCGCCCGTGAAGAATTTGTTATTGTGAACAACCAACTCCCCCCACTGCAGCGATAGTGTGTGCCGTCGTGGTCG GTCGTCGTCGTCGTGGTCGTGGTCGTCATCCCGTCGCTGGTCGTGGTGGTGGTTTCGTGAAGAAAAAAAAAAATAAGTTGGAATTTCCAGCCACAGTGTTACGAAAAGGGTGTGTGAATAGTAAAGTCTGGTGTTGCGACGCATTATAAAAAAAGGAATCAGAAAGTGAAAGAAAAGTCCTCCCGTCCGGGGAGTGAGGAAGCTGCTCGCCACAAGTTGGATGCGTGTCGTCCGGGGGCACTGTCGCAGCAAGTGCACAGAGCGTGTATAAAGTGTACCAAGTGTGTGTCTGT] [+] EMBL BM617784 [ ccgATCGCTCTGAAATTTGTGCAACTTTCGACTCAATTTAGCCACGCCAAACGCAGGTGAACCTGATTTTCGTCAAGCGCTTCACCACCACGCAGTGTGTACGCAAGCGAGTGTAAAGAACGTTCGCCCCGAAAATGCATAAAAAATGGCGCCGCACCAGTTTGGCCGCCCGTGAAGAATTTGTTATTGCGAACAACCAACTCCCCCCACTGCAGCGATAGTGTGTGCCGTCGTGGTCGGTCGTCGTCGTCGTCGTGGTCGTGGTCCTCATCCCGTCGCTGGTCGTGGTGGTGGTTTCGTGAAGAAAAAAAAAAATAAGTTGGAATTTCCAGCCACAGTGTTACGAAAAGGGTGTGTGAATAGTAAAGTCTGGTGTTGCGACGCATT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3814#0 ------------------------------------------------------------ consensus_3814#1 CCGAGAAAATGCGCGTAAATAATAAATCGCTCTGATATTTGTGCAACTTTCGACTCAATT 60 consensus_3814#0 ------------------------------------------------------------ consensus_3814#1 TAGCCACGCCAAACGCAAGTGAACCTGATTTTCGTCAAGCACTTCACCACCAGACAGTGT 120 consensus_3814#0 ------------------------------------------------------------ consensus_3814#1 GTACGCAAGCGAGTGTAAAGAACGTTCGCCCCAAAAATGCATAAAAAATGGCGCCGCACC 180 consensus_3814#0 ------------------------------------------------------------ consensus_3814#1 AGTTTGGTCGCCCGTGAAGAATTTGTTATTGTGAACAACCAACTCCCCCCACTGCAGCGA 240 consensus_3814#0 --------------CCGCCCACGCGTCCGCCCACGCGTCCG-GGTCCTCATCCCGTCGCT 45 consensus_3814#1 TAGTGTGTGCCGTCGTGGTCGGTCGTC-GTCGTCGTGGTCGTGGTCGTCATCCCGTCGCT 299 * * **** * * ** * ** **** ************* consensus_3814#0 GGTCGTGGTGGTGGTTTCGTGAAGAAAAAAAAAA-TAAGTTGGAATTTCCAGCCACAGTG 104 consensus_3814#1 GGTCGTGGTGGTGGTTTCGTGAAGAAAAAAAAAAATAAGTTGGAATTTCCAGCCACAGTG 359 ********************************** ************************* consensus_3814#0 TTACGAAAAGGGTGTGTGAATAGTAAAGTCTGGTGTTGCGACGCATTA-GAAAAAAGGAA 163 consensus_3814#1 TTACGAAAAGGGTGTGTGAATAGTAAAGTCTGGTGTTGCGACGCATTATAAAAAAAGGAA 419 ************************************************ ********** consensus_3814#0 TCAGAAAGTGAAAGAAAAGTCCTCCCGTCCGGGGAGTGAGGAAGCTGCTCGCCACAAGTT 223 consensus_3814#1 TCAGAAAGTGAAAGAAAAGTCCTCCCGTCCGGGGAGTGAGGAAGCTGCTCGCCACAAGTT 479 ************************************************************ consensus_3814#0 GGATGCGTGTCGTCCGGGG-CACTGTCGCAGCAAGTGCACAGAGCGTGTATAAAGTGTAC 282 consensus_3814#1 GGATGCGTGTCGTCCGGGGGCACTGTCGCAGCAAGTGCACAGAGCGTGTATAAAGTGTAC 539 ******************* **************************************** consensus_3814#0 CAAGTGTGTGTGTGTGTGTTTTTGCGTGTGTGGATGATTGTTTTTAATTTAGCAACGACG 342 consensus_3814#1 CAAGTGTGTGTCTGT--------------------------------------------- 554 *********** *** consensus_3814#0 GCAAAAACAGCAGCTCCTCCTCGCAGCCGGGGGCAACCAGACAGCAGCAACCAACAATAA 402 consensus_3814#1 ------------------------------------------------------------ consensus_3814#0 CAGAGCAACACCATCATCATCATCATCATCACAGAGACATGGCTGACCAGAACGAGAAAA 462 consensus_3814#1 ------------------------------------------------------------ consensus_3814#0 TTCTTCATCGCCTGCTGCAACAGGACGGGAACAGCATTTGTGCGGATTGTGATTCGAAAA 522 consensus_3814#1 ------------------------------------------------------------ consensus_3814#0 ATCTAGAATGGGCCTCATACAACATCGGCATCTTCCTGTGCACCCGGTGCTGTGCGGTCC 582 consensus_3814#1 ------------------------------------------------------------ consensus_3814#0 ATCGCAGCATGGGTGCGCACATATCGAAAGTGAAGCATCTCAAGCTGGACAAATGG 638 consensus_3814#1 -------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||