cluster # 3820

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Anopheles gambiae
cluster # 3820 cluster # 3820 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3820#0 length = 983 sequences # 1

consensus_3820#1 length = 765 sequences # 1
consensus_3820#2 length = 204 sequences # 1

consensusID : consensus_3820#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 983
fasta sequence

                              [CGCANGACTCGGCCCACGGGATTAATACCTCAAAGTGATGCGCAGCATCGNGCGCAANGAGTGGTCCGCTGCGCTGGGCATATTTTCCTGCCCTCAAGCACGTGCAGATACTGCAGCCGGACATACGACCGCATCTGCGACAGTACGCAGAAGCAGCAGCTGTCGTGGTGTTGCTGTAACCTGGCTGCAGCAAACGGGCTCCAAGGGCGCTGGAGCAGTTCATCGAATCCGTGGCGCAACGATGCCGGTGGTGGCGGCCATGGTCNGCATGACAGGTCCAGCACGGATCAGCTAACGGCGGCGGGTACGAGACGTTGGCCGGCAGCGCATTGCGACCCGTAGTTACGNACACTGACTGGTTANCAACAACGNATNCTTGGTTCTTAGNGGAAGCAAACTGCCACNCNGAAGNCCACTATCGTCGCACCCACACCGAAATCACCANGNGACGACGNNGACTCATGGCCATAACACAAAGAAAAACCCGCAAACNGGGCACAAACCGCNNAATNTAACACAGAAAAAACAGGAAAAAANCCATACCGCACAANCCAGGNAAAGTACNCNCGGGTNTCCGACAACACAAGANAAAAACANACAGGCTCNACACCCAACNAANTGACGAGACCCCACGAAAACCATACANAAAACCACACGCACACCCACATGTAAACCNATANGCAGACAAATTAACCCTAANNANACAAATCAAACCCCCCTAACACANCAACTTCAACNATCCCATAACCACACACNACCCACCACACCAACAAAATAACATCNCANAACAAAACANACAAACTTTACTCTTCANNATCAACAACCNTACACTNCCATCACAAAACACACCCCCCANCATCTCCTACNNTNCCTCCATNNANATNAACAAACNCCACAACACAATCAAACCATCACACCCACCNTACTATACAAACCCCAACACAAGACCCCAACAANCANACCATCNNATCCATAGTCCACCC]

[+] EMBL AL694524             [CGCANGACTCGGCCCACGGGATTAATACCTCAAAGTGATGCGCAGCATCGNGCGCAANGAGTGGTCCGCTGCGCTGGGCATATTTTCCTGCCCTCAAGCACGTGCAGATACTGCAGCCGGACATACGACCGCATCTGCGACAGTACGCAGAAGCAGCAGCTGTCGTGGTGTTGCTGTAACCTGGCTGCAGCAAACGGGCTCCAAGGGCGCTGGAGCAGTTCATCGAATCCGTGGCGCAACGATGCCGGTGGTGGCGGCCATGGTCNGCATGACAGGTCCAGCACGGATCAGCTAACGGCGGCGGGTACGAGACGTTGGCCGGCAGCGCATTGCGACCCGTAGTTACGNACACTGACTGGTTANCAACAACGNATNCTTGGTTCTTAGNGGAAGCAAACTGCCACNCNGAAGNCCACTATCGTCGCACCCACACCGAAATCACCANGNGACGACGNNGACTCATGGCCATAACACAAAGAAAAACCCGCAAACNGGGCACAAACCGCNNAATNTAACACAGAAAAAACAGGAAAAAANCCATACCGCACAANCCAGGNAAAGTACNCNCGGGTNTCCGACAACACAAGANAAAAACANACAGGCTCNACACCCAACNAANTGACGAGACCCCACGAAAACCATACANAAAACCACACGCACACCCACATGTAAACCNATANGCAGACAAATTAACCCTAANNANACAAATCAAACCCCCCTAACACANCAACTTCAACNATCCCATAACCACACACNACCCACCACACCAACAAAATAACATCNCANAACAAAACANACAAACTTTACTCTTCANNATCAACAACCNTACACTNCCATCACAAAACACACCCCCCANCATCTCCTACNNTNCCTCCATNNANATNAACAAACNCCACAACACAATCAAACCATCACACCCACCNTACTATACAAACCCCAACACAAGACCCCAACAANCANACCATCNNATCCATAGTCCACCC]




>consensus_3820#0
CGCANGACTCGGCCCACGGGATTAATACCTCAAAGTGATGCGCAGCATCGNGCGCAANGA
GTGGTCCGCTGCGCTGGGCATATTTTCCTGCCCTCAAGCACGTGCAGATACTGCAGCCGG
ACATACGACCGCATCTGCGACAGTACGCAGAAGCAGCAGCTGTCGTGGTGTTGCTGTAAC
CTGGCTGCAGCAAACGGGCTCCAAGGGCGCTGGAGCAGTTCATCGAATCCGTGGCGCAAC
GATGCCGGTGGTGGCGGCCATGGTCNGCATGACAGGTCCAGCACGGATCAGCTAACGGCG
GCGGGTACGAGACGTTGGCCGGCAGCGCATTGCGACCCGTAGTTACGNACACTGACTGGT
TANCAACAACGNATNCTTGGTTCTTAGNGGAAGCAAACTGCCACNCNGAAGNCCACTATC
GTCGCACCCACACCGAAATCACCANGNGACGACGNNGACTCATGGCCATAACACAAAGAA
AAACCCGCAAACNGGGCACAAACCGCNNAATNTAACACAGAAAAAACAGGAAAAAANCCA
TACCGCACAANCCAGGNAAAGTACNCNCGGGTNTCCGACAACACAAGANAAAAACANACA
GGCTCNACACCCAACNAANTGACGAGACCCCACGAAAACCATACANAAAACCACACGCAC
ACCCACATGTAAACCNATANGCAGACAAATTAACCCTAANNANACAAATCAAACCCCCCT
AACACANCAACTTCAACNATCCCATAACCACACACNACCCACCACACCAACAAAATAACA
TCNCANAACAAAACANACAAACTTTACTCTTCANNATCAACAACCNTACACTNCCATCAC
AAAACACACCCCCCANCATCTCCTACNNTNCCTCCATNNANATNAACAAACNCCACAACA
CAATCAAACCATCACACCCACCNTACTATACAAACCCCAACACAAGACCCCAACAANCAN
ACCATCNNATCCATAGTCCACCC

consensusID : consensus_3820#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 765
fasta sequence

                              [CTGCGCTGGGCATATTTTCCGCCCTCAAGCACGTGCAGATACTGCAGCCGGACATCGACCGCATCTGCGACAGTACGCAGAAGCAGCAGCTGTCGGGTGTGCTGAACCGGCTGCAGCAAACGGCCTCCAAGGCGCTGGAGCAGTTCATCGAATCCGTGCGCAACGATGCCGGTGGTGGCGGCATGGTCAGCATGACGTCCAGCACGATCAGCTACGGCGGCGGGTCGAGCGTGCCGCGCGATGCGACCGTGTACGAGCTGACGTCCAACACGATCTGGTTCTTGGAGCAGCTGCAGGAGCATTGTGACACGATCGGGGGGCTGCTACAGACCGAGGCAATCTATACGAACGATCTCGATCGTATCGCGTCACAGAAAGCGCTCACCATGGAGCAGAAAAATAAGGCCCTGCTTGGCATCTACGTCCGTAAGTATCGAGCTGCAATATGGAGCACATGTAAAACTCGAACCGGGTGTATGTAAAAAATTTTGCTCCTTTTTTCACAGGCAAAGTGCTGGCCGAGTTAAACTACACGATTGCAACGAAATCGGAACAGTACAGTGATACCGCCACCAAGCAGCTGTTCAAGCTAAACAACACGCACTACATCTTGAAATCGCTGCAACGGTCCAGCCTGATCGAGATCGTGGCACTGACCGAGCATGACTGCGAGCGTCGCTACCAGAAGATGATACAGGATCTGAAGAAGGCGTACCTGGGCTCGTGGTCGAAGATGCTCTCCTTCATTCACCCGCTGGACGACAT]

[+] EMBL BX625393             [CTGCGCTGGGCATATTTTCCGCCCTCAAGCACGTGCAGATACTGCAGCCGGACATCGACCGCATCTGCGACAGTACGCAGAAGCAGCAGCTGTCGGGTGTGCTGAACCGGCTGCAGCAAACGGCCTCCAAGGCGCTGGAGCAGTTCATCGAATCCGTGCGCAACGATGCCGGTGGTGGCGGCATGGTCAGCATGACGTCCAGCACGATCAGCTACGGCGGCGGGTCGAGCGTGCCGCGCGATGCGACCGTGTACGAGCTGACGTCCAACACGATCTGGTTCTTGGAGCAGCTGCAGGAGCATTGTGACACGATCGGGGGGCTGCTACAGACCGAGGCAATCTATACGAACGATCTCGATCGTATCGCGTCACAGAAAGCGCTCACCATGGAGCAGAAAAATAAGGCCCTGCTTGGCATCTACGTCCGTAAGTATCGAGCTGCAATATGGAGCACATGTAAAACTCGAACCGGGTGTATGTAAAAAATTTTGCTCCTTTTTTCACAGGCAAAGTGCTGGCCGAGTTAAACTACACGATTGCAACGAAATCGGAACAGTACAGTGATACCGCCACCAAGCAGCTGTTCAAGCTAAACAACACGCACTACATCTTGAAATCGCTGCAACGGTCCAGCCTGATCGAGATCGTGGCACTGACCGAGCATGACTGCGAGCGTCGCTACCAGAAGATGATACAGGATCTGAAGAAGGCGTACCTGGGCTCGTGGTCGAAGATGCTCTCCTTCATTCACCCGCTGGACGACAT]




>consensus_3820#1
CTGCGCTGGGCATATTTTCCGCCCTCAAGCACGTGCAGATACTGCAGCCGGACATCGACC
GCATCTGCGACAGTACGCAGAAGCAGCAGCTGTCGGGTGTGCTGAACCGGCTGCAGCAAA
CGGCCTCCAAGGCGCTGGAGCAGTTCATCGAATCCGTGCGCAACGATGCCGGTGGTGGCG
GCATGGTCAGCATGACGTCCAGCACGATCAGCTACGGCGGCGGGTCGAGCGTGCCGCGCG
ATGCGACCGTGTACGAGCTGACGTCCAACACGATCTGGTTCTTGGAGCAGCTGCAGGAGC
ATTGTGACACGATCGGGGGGCTGCTACAGACCGAGGCAATCTATACGAACGATCTCGATC
GTATCGCGTCACAGAAAGCGCTCACCATGGAGCAGAAAAATAAGGCCCTGCTTGGCATCT
ACGTCCGTAAGTATCGAGCTGCAATATGGAGCACATGTAAAACTCGAACCGGGTGTATGT
AAAAAATTTTGCTCCTTTTTTCACAGGCAAAGTGCTGGCCGAGTTAAACTACACGATTGC
AACGAAATCGGAACAGTACAGTGATACCGCCACCAAGCAGCTGTTCAAGCTAAACAACAC
GCACTACATCTTGAAATCGCTGCAACGGTCCAGCCTGATCGAGATCGTGGCACTGACCGA
GCATGACTGCGAGCGTCGCTACCAGAAGATGATACAGGATCTGAAGAAGGCGTACCTGGG
CTCGTGGTCGAAGATGCTCTCCTTCATTCACCCGCTGGACGACAT

consensusID : consensus_3820#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 204
fasta sequence

                              [AGCAGCTGCAGGAGCATTGTGACACGATCGGGGGGCGGCGACAGACCGAGGCAATCTATACGAACGAACGCGATCGTATCGCGGCACAGAAAGCGCGCACCAGGGAGCAGAAAAAAAAGGCCCCGCAGGGCAACTACGCCCGCAAAGGGCGGGCCGAGGTAAACCACACGAATGCAACGAAAACGGAACAGGACAGGGAAACCG]

[+] EMBL BX611498             [AGCAGCTGCAGGAGCATTGTGACACGATCGGGGGGCGGCGACAGACCGAGGCAATCTATACGAACGAACGCGATCGTATCGCGGCACAGAAAGCGCGCACCAGGGAGCAGAAAAAAAAGGCCCCGCAGGGCAACTACGCCCGCAAAGGGCGGGCCGAGGTAAACCACACGAATGCAACGAAAACGGAACAGGACAGGGAAACCG]




>consensus_3820#2
AGCAGCTGCAGGAGCATTGTGACACGATCGGGGGGCGGCGACAGACCGAGGCAATCTATA
CGAACGAACGCGATCGTATCGCGGCACAGAAAGCGCGCACCAGGGAGCAGAAAAAAAAGG
CCCCGCAGGGCAACTACGCCCGCAAAGGGCGGGCCGAGGTAAACCACACGAATGCAACGA
AAACGGAACAGGACAGGGAAACCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3820#1      ------------------------------------------------------------
consensus_3820#2      ------------------------------------------------------------
consensus_3820#0      CGCANGACTCGGCCCACGGGATTAATACCTCAAAGTGATGCGCAGCATCGNGCGCAANGA 60
                                                                                  

consensus_3820#1      --------CTGCGCTGGGCATATTTTCC-GCCCTCAAGCACGTGCAGATACTGCAGCCGG 51
consensus_3820#2      ------------------------------------------------------------
consensus_3820#0      GTGGTCCGCTGCGCTGGGCATATTTTCCTGCCCTCAAGCACGTGCAGATACTGCAGCCGG 120
                                                                                  

consensus_3820#1      ACAT-CGACCGCATCTGCGACAGTACGCAGAAGCAGCAGCTGTCGGG----TGTGCTGAA 106
consensus_3820#2      ------------------------------------------------------------
consensus_3820#0      ACATACGACCGCATCTGCGACAGTACGCAGAAGCAGCAGCTGTCGTGGTGTTGCTGTAAC 180
                                                                                  

consensus_3820#1      CCGGCTGCAGCAAACGGCCTCCAAGG-CGCTGGAGCAGTTCATCGAATCCGTG-CGCAAC 164
consensus_3820#2      ------------------------------------------------------------
consensus_3820#0      CTGGCTGCAGCAAACGGGCTCCAAGGGCGCTGGAGCAGTTCATCGAATCCGTGGCGCAAC 240
                                                                                  

consensus_3820#1      GATGCCGGTGGTGGCGGC-ATGGTCAGCATGAC--GTCCAGCACG-ATCAGCTA-CGGCG 219
consensus_3820#2      ------------------------------------------------------------
consensus_3820#0      GATGCCGGTGGTGGCGGCCATGGTCNGCATGACAGGTCCAGCACGGATCAGCTAACGGCG 300
                                                                                  

consensus_3820#1      GCGGGTCGAGCGTGCCGCGCGATGCGACCGTGTACGAGCTGACGTCCAACACGATCTGGT 279
consensus_3820#2      ------------------------------------------------------------
consensus_3820#0      GCGGGTACGAGACGTTGGCCGGCAGCGCATTGCGACCCGTAGTTACGNACACTGACTGGT 360
                                                                                  

consensus_3820#1      TCTTGGAGCAGCTGCAGGAGCATTGTGACACGATCGGGGGGCTGCTACAGACCGAGGCAA 339
consensus_3820#2      ------AGCAGCTGCAGGAGCATTGTGACACGATCGGGGGGCGGCGACAGACCGAGGCAA 54
consensus_3820#0      T-----ANCAACAAC-GNATNCTTGGTTCTTAGNGGAAGCAAACTGCCACNCNGAAGNCC 414
                            * ** *  * * *   ***   *      *  *        **  * ** *   

consensus_3820#1      TCTATA--CGAACGATCTC-GATCGTATCGCGTCACAGAAAGCGCTCACCATGG-AGCAG 395
consensus_3820#2      TCTATA--CGAACGAACGC-GATCGTATCGCGGCACAGAAAGCGCGCACCAGGG-AGCAG 110
consensus_3820#0      ACTATCGTCGCACCCACACCGAAATCACCANGNGACGACGNNGACTCATGGCCATAACAC 474
                       ****   ** **   * * **    * *  *  **        * **       * ** 

consensus_3820#1      AAAAATAAGGCCCTGCTTGGCATCTACGTCCGTAAGTATCGAGCTGCAATATGGAGCACA 455
consensus_3820#2      AAAAAAAAGGCCCCGCAGGGCAACTACGCCCGCAAAGGGCGGGCCGAGGTAAACCACACG 170
consensus_3820#0      AAAGAAAAACCCGCAAACNGGGCACAAACCGCNNAATNTAACACAGAAAAAACAGGAAAA 534
                      *** * **  **       *     *   *    *        * *    *      *  

consensus_3820#1      TGTAAAACTCGAACCGGGTGTATGTAAAAAATT-TTGCTCCTTTTTTCACAGGCAAAGTG 514
consensus_3820#2      AATGCAACGAAAACGGAACAGGACAGGGAAACC-G------------------------- 204
consensus_3820#0      AANCCATACCGCACAANCCAGGNAAAGTACNCNCGGGTNTCCGACAACACAAGANAAAAA 594
                           *      **              *                               

consensus_3820#1      CTGGCCGAGTTAAACTACACGATTGCAACGAAATCGGAACAGTACAGTGATACCGCCACC 574
consensus_3820#2      ------------------------------------------------------------
consensus_3820#0      CANACAGGCTCNACACCCAACNAANTGACGAGACCCCACGAAAACCATACANAAAACCAC 654
                                                                                  

consensus_3820#1      AAGCAGCTGTTCAAGCTAAACAACACGCACTACATCTTGAAATCGCTGCAACGGTCCAGC 634
consensus_3820#2      ------------------------------------------------------------
consensus_3820#0      ACGCACACCCACATGTAAACCNATANGCAGACAAATTAACCCTAANNANACAAATCAAAC 714
                                                                                  

consensus_3820#1      CTGATCGAGATCGTGGCACTGACCGAGC-ATGACTGCGAGCGTCGCTACCAGAAGATGAT 693
consensus_3820#2      ------------------------------------------------------------
consensus_3820#0      CCCCCTAACACANCAACTTCAACNATCCCATAACCACACACNACCCACCACACCAACAAA 774
                                                                                  

consensus_3820#1      ACAGGATCTGAAGAAGGCGTACCTGGGCTC-GTGGTCGAAGATGCTCTCCTTCATTCACC 752
consensus_3820#2      ------------------------------------------------------------
consensus_3820#0      ATAACATCNCANAACAAAACANACAAACTTTACTCTTCANNATCAACAACCNTACACTNC 834
                                                                                  

consensus_3820#1      CGCTGGACGACAT----------------------------------------------- 765
consensus_3820#2      ------------------------------------------------------------
consensus_3820#0      CATCACAAAACACACCCCCCANCATCTCCTACNNTNCCTCCATNNANATNAACAAACNCC 894
                                                                                  

consensus_3820#1      ------------------------------------------------------------
consensus_3820#2      ------------------------------------------------------------
consensus_3820#0      ACAACACAATCAAACCATCACACCCACCNTACTATACAAACCCCAACACAAGACCCCAAC 954
                                                                                  

consensus_3820#1      -----------------------------
consensus_3820#2      -----------------------------
consensus_3820#0      AANCANACCATCNNATCCATAGTCCACCC 983