cluster # 3832

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Anopheles gambiae
cluster # 3832 cluster # 3832 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3832#0 length = 895 sequences # 1

consensus_3832#1 length = 628 sequences # 1
consensus_3832#2 length = 627 sequences # 1

consensusID : consensus_3832#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 895
fasta sequence

                              [TATGCTCGAGGCAGATAGCCCCGAGGTTTACAGTTACGGCTGGCCTTGTTGTGTGTGTCTAAATAAGAAAACCATGAACTCGCACTTCTATCCCTGGAAGAACCACACCTGGAAACCATGGTCTGGTGGCATACGAAAGTGGGAACAACGTGTACCCTGCTACAGCCTGTGCATAACAATCTGCTCTGCACCTGTTTGTGCTGATGGTTACTGAAACTCTACCCTGTGCCAGGTAACNCATGAGTCGACAAAGGAGNGACTCAGGAATCTGGNACCAAGAACCCCAAGAGGAACNCCCACGGAGGANGGATTGATACAGTACNACGGAGGCAGCCACTACTCGCGAGTCGGAGCTTTTCAGCACCGAGGCAGGCAACGCAGTGACTGACCGGACGAAGCCAAGGCGGANCCNGGAAACTGGAAGNCCAACTGTGGACATTGGCTCCATGGAAACCATTGNCGAGCCAATTTCCTGGCCGGCATTCTCCACGCGNTGGTACCTTCCAAACGTAANTTCCCCTGACCGCAAAANAGGACTCTCAGAACGCCCACNAGGCCAAGGTATCACCNTTGGCCGCTTGGCAGACCCAAGTNACGGGCANATTATACANCCCAAAGNNATACAAANAGCCNCCAGGGAANACNCGGCAANCGGCGCCCNCNGGGGCGAGCAACCNGGCGGCCANCACACCCCGGGGAAACNGACGTTAAGATGGCACCCCCAACAAANCGACGCGCATAACCAGGCGGNACCACCCCAACAGCNCAAGCNCCCCACAGCNACAGCGGCAGGGACCACGGCGCCCACGGGCANAGACCCCCAGGCAAACTAAGGAGCGNCGCGNAAACACACTAGGGCATAGGGCAGCANNACCACAAGCACCGTGGGACGGAG]

[+] EMBL AL694635             [TATGCTCGAGGCAGATAGCCCCGAGGTTTACAGTTACGGCTGGCCTTGTTGTGTGTGTCTAAATAAGAAAACCATGAACTCGCACTTCTATCCCTGGAAGAACCACACCTGGAAACCATGGTCTGGTGGCATACGAAAGTGGGAACAACGTGTACCCTGCTACAGCCTGTGCATAACAATCTGCTCTGCACCTGTTTGTGCTGATGGTTACTGAAACTCTACCCTGTGCCAGGTAACNCATGAGTCGACAAAGGAGNGACTCAGGAATCTGGNACCAAGAACCCCAAGAGGAACNCCCACGGAGGANGGATTGATACAGTACNACGGAGGCAGCCACTACTCGCGAGTCGGAGCTTTTCAGCACCGAGGCAGGCAACGCAGTGACTGACCGGACGAAGCCAAGGCGGANCCNGGAAACTGGAAGNCCAACTGTGGACATTGGCTCCATGGAAACCATTGNCGAGCCAATTTCCTGGCCGGCATTCTCCACGCGNTGGTACCTTCCAAACGTAANTTCCCCTGACCGCAAAANAGGACTCTCAGAACGCCCACNAGGCCAAGGTATCACCNTTGGCCGCTTGGCAGACCCAAGTNACGGGCANATTATACANCCCAAAGNNATACAAANAGCCNCCAGGGAANACNCGGCAANCGGCGCCCNCNGGGGCGAGCAACCNGGCGGCCANCACACCCCGGGGAAACNGACGTTAAGATGGCACCCCCAACAAANCGACGCGCATAACCAGGCGGNACCACCCCAACAGCNCAAGCNCCCCACAGCNACAGCGGCAGGGACCACGGCGCCCACGGGCANAGACCCCCAGGCAAACTAAGGAGCGNCGCGNAAACACACTAGGGCATAGGGCAGCANNACCACAAGCACCGTGGGACGGAG]




>consensus_3832#0
TATGCTCGAGGCAGATAGCCCCGAGGTTTACAGTTACGGCTGGCCTTGTTGTGTGTGTCT
AAATAAGAAAACCATGAACTCGCACTTCTATCCCTGGAAGAACCACACCTGGAAACCATG
GTCTGGTGGCATACGAAAGTGGGAACAACGTGTACCCTGCTACAGCCTGTGCATAACAAT
CTGCTCTGCACCTGTTTGTGCTGATGGTTACTGAAACTCTACCCTGTGCCAGGTAACNCA
TGAGTCGACAAAGGAGNGACTCAGGAATCTGGNACCAAGAACCCCAAGAGGAACNCCCAC
GGAGGANGGATTGATACAGTACNACGGAGGCAGCCACTACTCGCGAGTCGGAGCTTTTCA
GCACCGAGGCAGGCAACGCAGTGACTGACCGGACGAAGCCAAGGCGGANCCNGGAAACTG
GAAGNCCAACTGTGGACATTGGCTCCATGGAAACCATTGNCGAGCCAATTTCCTGGCCGG
CATTCTCCACGCGNTGGTACCTTCCAAACGTAANTTCCCCTGACCGCAAAANAGGACTCT
CAGAACGCCCACNAGGCCAAGGTATCACCNTTGGCCGCTTGGCAGACCCAAGTNACGGGC
ANATTATACANCCCAAAGNNATACAAANAGCCNCCAGGGAANACNCGGCAANCGGCGCCC
NCNGGGGCGAGCAACCNGGCGGCCANCACACCCCGGGGAAACNGACGTTAAGATGGCACC
CCCAACAAANCGACGCGCATAACCAGGCGGNACCACCCCAACAGCNCAAGCNCCCCACAG
CNACAGCGGCAGGGACCACGGCGCCCACGGGCANAGACCCCCAGGCAAACTAAGGAGCGN
CGCGNAAACACACTAGGGCATAGGGCAGCANNACCACAAGCACCGTGGGACGGAG

consensusID : consensus_3832#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 628
fasta sequence

                              [GAGGCAAGAATCGGCACGTGAAAGAAAACATGAACTCGCACTCTCTATCCCGGAAGAACCACACCGGAAACCATGGTCGGTGGCATACGAAAGTGGGAACAACTGTCCCGCACAGCCGGCAAACAATCGCTCGCACCGTTTGGCGATGGTTACGAAACTCCCCGGCAGGTAAAGAGTCGCAAAGAGGACTCAGAATCGGACCAAGAACCCACAGAACCCCCGGAGGAGGATGATCAGTACACGGAGCAGCACTACTCGGAGTCGGAGTTTCACACCGAGCAGGAAGAGGATGACGACGAGCAAGCGGACCGCAACGAGCACGGCTGGTCAGAACATGCGCATCCGCCGATTCAGGTGTCTCGAAGTATCCGCCGAAAAGATTCGAGCAGGGCAGTCACCGTGCTGCACATTGATTTCATTACCGACGAGACTGGGACGGTTCGAGTTGCCAAGCTCGGGGCCAGAGCAGAGGCCCGCACGACCGATTGGGGAATGGTTGGGCAGTGAGTGGCAAACCGGGGAACGGGAAAATCCGCTTCCAGGGTCAGNCAAGNCAGGTCCCAAGAAGGCAGCNAACANTTTCCNTTTTAGCCAGATGAACCGGGTGCCGTGANAGAATCGAGCGAAA]

[+] EMBL BX468114             [GAGGCAAGAATCGGCACGTGAAAGAAAACATGAACTCGCACTCTCTATCCCGGAAGAACCACACCGGAAACCATGGTCGGTGGCATACGAAAGTGGGAACAACTGTCCCGCACAGCCGGCAAACAATCGCTCGCACCGTTTGGCGATGGTTACGAAACTCCCCGGCAGGTAAAGAGTCGCAAAGAGGACTCAGAATCGGACCAAGAACCCACAGAACCCCCGGAGGAGGATGATCAGTACACGGAGCAGCACTACTCGGAGTCGGAGTTTCACACCGAGCAGGAAGAGGATGACGACGAGCAAGCGGACCGCAACGAGCACGGCTGGTCAGAACATGCGCATCCGCCGATTCAGGTGTCTCGAAGTATCCGCCGAAAAGATTCGAGCAGGGCAGTCACCGTGCTGCACATTGATTTCATTACCGACGAGACTGGGACGGTTCGAGTTGCCAAGCTCGGGGCCAGAGCAGAGGCCCGCACGACCGATTGGGGAATGGTTGGGCAGTGAGTGGCAAACCGGGGAACGGGAAAATCCGCTTCCAGGGTCAGNCAAGNCAGGTCCCAAGAAGGCAGCNAACANTTTCCNTTTTAGCCAGATGAACCGGGTGCCGTGANAGAATCGAGCGAAA]




>consensus_3832#1
GAGGCAAGAATCGGCACGTGAAAGAAAACATGAACTCGCACTCTCTATCCCGGAAGAACC
ACACCGGAAACCATGGTCGGTGGCATACGAAAGTGGGAACAACTGTCCCGCACAGCCGGC
AAACAATCGCTCGCACCGTTTGGCGATGGTTACGAAACTCCCCGGCAGGTAAAGAGTCGC
AAAGAGGACTCAGAATCGGACCAAGAACCCACAGAACCCCCGGAGGAGGATGATCAGTAC
ACGGAGCAGCACTACTCGGAGTCGGAGTTTCACACCGAGCAGGAAGAGGATGACGACGAG
CAAGCGGACCGCAACGAGCACGGCTGGTCAGAACATGCGCATCCGCCGATTCAGGTGTCT
CGAAGTATCCGCCGAAAAGATTCGAGCAGGGCAGTCACCGTGCTGCACATTGATTTCATT
ACCGACGAGACTGGGACGGTTCGAGTTGCCAAGCTCGGGGCCAGAGCAGAGGCCCGCACG
ACCGATTGGGGAATGGTTGGGCAGTGAGTGGCAAACCGGGGAACGGGAAAATCCGCTTCC
AGGGTCAGNCAAGNCAGGTCCCAAGAAGGCAGCNAACANTTTCCNTTTTAGCCAGATGAA
CCGGGTGCCGTGANAGAATCGAGCGAAA

consensusID : consensus_3832#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 627
fasta sequence

                              [GAATTCCGAGGTTTGAGTTACGGCTGGCCTTGCTTGTGTGTGTCTAAATAAGAAAACATGAACTCGCACTTCTATCCCGGAAGAACCACACCGGAAACCATGGTCGGTGGCATACGAAAGTGGGAACAACTGTCCCGCACAGCCGGCAAACAATCGCTCGCACCGTTTGGCGATGGTTACGAAACTCCCCGGCAGGTAAAGAGTCGCAAAGAGGACTCAGAATCGGACCAAGAACCCAAGAACCCCCGGAGGAGGATGATCAGTACACGGAGCAGCACTACTCGGAGTCGGAGTTTCACACCGAGCAGGAAGAGGATGACGACGAGCAAGCGGACCGCAACGAGCACGGCTGGTCAGAACATGCGCATCCGCCGATTCAGGTGTCTCAATATCCGCCGAAAAGATTCGAGCAGGGCAGTCAACTGCTGCACATTGATTTCATTACCGACGAGCTGGGACGGTTCGAGTTGCCAAGCTCGGGCCAGAGCAGAGGCCGCGACCGATGGGAATGGTGGGCAGTGGGGCAACGGGAAGGAAATCCGCTTCCGGTCAGAGAGTCCCAGCAGACACAAATTTCCTTTACCGCGAGCGGGTGCGTGAGATCGAGCGAACAATCAGATTCTGCTC]

[+] EMBL AL694677             [GAATTCCGAGGTTTGAGTTACGGCTGGCCTTGCTTGTGTGTGTCTAAATAAGAAAACATGAACTCGCACTTCTATCCCGGAAGAACCACACCGGAAACCATGGTCGGTGGCATACGAAAGTGGGAACAACTGTCCCGCACAGCCGGCAAACAATCGCTCGCACCGTTTGGCGATGGTTACGAAACTCCCCGGCAGGTAAAGAGTCGCAAAGAGGACTCAGAATCGGACCAAGAACCCAAGAACCCCCGGAGGAGGATGATCAGTACACGGAGCAGCACTACTCGGAGTCGGAGTTTCACACCGAGCAGGAAGAGGATGACGACGAGCAAGCGGACCGCAACGAGCACGGCTGGTCAGAACATGCGCATCCGCCGATTCAGGTGTCTCAATATCCGCCGAAAAGATTCGAGCAGGGCAGTCAACTGCTGCACATTGATTTCATTACCGACGAGCTGGGACGGTTCGAGTTGCCAAGCTCGGGCCAGAGCAGAGGCCGCGACCGATGGGAATGGTGGGCAGTGGGGCAACGGGAAGGAAATCCGCTTCCGGTCAGAGAGTCCCAGCAGACACAAATTTCCTTTACCGCGAGCGGGTGCGTGAGATCGAGCGAACAATCAGATTCTGCTC]




>consensus_3832#2
GAATTCCGAGGTTTGAGTTACGGCTGGCCTTGCTTGTGTGTGTCTAAATAAGAAAACATG
AACTCGCACTTCTATCCCGGAAGAACCACACCGGAAACCATGGTCGGTGGCATACGAAAG
TGGGAACAACTGTCCCGCACAGCCGGCAAACAATCGCTCGCACCGTTTGGCGATGGTTAC
GAAACTCCCCGGCAGGTAAAGAGTCGCAAAGAGGACTCAGAATCGGACCAAGAACCCAAG
AACCCCCGGAGGAGGATGATCAGTACACGGAGCAGCACTACTCGGAGTCGGAGTTTCACA
CCGAGCAGGAAGAGGATGACGACGAGCAAGCGGACCGCAACGAGCACGGCTGGTCAGAAC
ATGCGCATCCGCCGATTCAGGTGTCTCAATATCCGCCGAAAAGATTCGAGCAGGGCAGTC
AACTGCTGCACATTGATTTCATTACCGACGAGCTGGGACGGTTCGAGTTGCCAAGCTCGG
GCCAGAGCAGAGGCCGCGACCGATGGGAATGGTGGGCAGTGGGGCAACGGGAAGGAAATC
CGCTTCCGGTCAGAGAGTCCCAGCAGACACAAATTTCCTTTACCGCGAGCGGGTGCGTGA
GATCGAGCGAACAATCAGATTCTGCTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3832#1      --------------------------------------------GAGGCAAGAATCGGCA 16
consensus_3832#2      ---------------GAATTCCGAGGTTTG-AGTTACGGCTGGCCTTGCTTGTGTGTGTC 44
consensus_3832#0      TATGCTCGAGGCAGATAGCCCCGAGGTTTACAGTTACGGCTGGCCTTGTT-GTGTGTGTC 59
                                                                     *   *  *  *  

consensus_3832#1      CGTGAAAGAAAAC-ATGAACTCGCACTCTCTATCCC-GGAAGAACCACACC-GGAAACCA 73
consensus_3832#2      TAAATAAGAAAAC-ATGAACTCGCACT-TCTATCCC-GGAAGAACCACACC-GGAAACCA 100
consensus_3832#0      TAAATAAGAAAACCATGAACTCGCACT-TCTATCCCTGGAAGAACCACACCTGGAAACCA 118
                           ******** ************* ******** ************** ********

consensus_3832#1      TGGTC-GGTGGCATACGAAAGTGGGAACAAC---TGTCCCGC-ACAGCCGGCA---AACA 125
consensus_3832#2      TGGTC-GGTGGCATACGAAAGTGGGAACAAC---TGTCCCGC-ACAGCCGGCA---AACA 152
consensus_3832#0      TGGTCTGGTGGCATACGAAAGTGGGAACAACGTGTACCCTGCTACAGCCTGTGCATAACA 178
                      ***** *************************   *  ** ** ****** *     ****

consensus_3832#1      ATC-GCTC-GCACC-GTTTGG--CGATGGTTAC-GAAACTC---------CCCGGCAGGT 170
consensus_3832#2      ATC-GCTC-GCACC-GTTTGG--CGATGGTTAC-GAAACTC---------CCCGGCAGGT 197
consensus_3832#0      ATCTGCTCTGCACCTGTTTGTGCTGATGGTTACTGAAACTCTACCCTGTGCCAGGTAACN 238
                      *** **** ***** *****    ********* *******         ** ** *   

consensus_3832#1      AAAGAGTCG-CAAAGA--GGACTCAGAA---TCGGACCAAGAACCCACAGA-----ACCC 219
consensus_3832#2      AAAGAGTCG-CAAAGA--GGACTCAGAA---TCGGACCAAGAACCCA-AGA-----ACCC 245
consensus_3832#0      CATGAGTCGACAAAGGAGNGACTCAGGAATCTGGNACCAAGAACCCCAAGAGGAACNCCC 298
                       * ****** *****    ******* *   * * ***********  ***      ***

consensus_3832#1      CCGGAGGAGGA--TGAT-CAGTACA-CGGAG-CAGC-ACTACTCG-GAGTCGGAGTTTC- 271
consensus_3832#2      CCGGAGGAGGA--TGAT-CAGTACA-CGGAG-CAGC-ACTACTCG-GAGTCGGAGTTTC- 297
consensus_3832#0      ACGGAGGANGGATTGATACAGTACNACGGAGGCAGCCACTACTCGCGAGTCGGAGCTTTT 358
                       ******* *   **** ******  ***** **** ******** ********* **  

consensus_3832#1      --ACACCGAG-CAGGAAGAGGA-TGAC------GACGAGC---AAGCGGACCGC---AAC 315
consensus_3832#2      --ACACCGAG-CAGGAAGAGGA-TGAC------GACGAGC---AAGCGGACCGC---AAC 341
consensus_3832#0      CAGCACCGAGGCAGGCAACGCAGTGACTGACCGGACGAAGCCAAGGCGGANCCNGGAAAC 418
                         ******* **** *  * * ****      *****     * ***** *     ***

consensus_3832#1      GAGCACGGCTGGTCAGAACATGCGCATCCGCCGATTCAGGTGTC---TCGAAGTATCCGC 372
consensus_3832#2      GAGCACGGCTGGTCAGAACATGCGCATCCGCCGATTCAGGTGTC---TCAA--TATCCGC 396
consensus_3832#0      TGGAAGNCCAACTGTGGACATTGGC-TCCATGGAAACCATTGNCGAGCCAATTTCCTGGC 477
                        * *   *   *  * ****  ** ***   **  *   ** *    * *  *    **

consensus_3832#1      CGAAAAGATTCGAGCAGGGCAGTCACCGTGCTGCACATTGATTTCATTACCGACGAGA-- 430
consensus_3832#2      CGAAAAGATTCGAGCAGGGCAGTCAAC-TGCTGCACATTGATTTCATTACCGACGAG--- 452
consensus_3832#0      CGGCATTCTCCACGCGNTGGTACCTTCCAAACGTAANTTCCCCTGACCGCAAAANAGGAC 537
                      **  *   * *  **   *    *  *     * *  **    * *   *  *  **   

consensus_3832#1      -CTGGGACGGTTCGAGTTGCCAAGCTCGGGGCCAGAGCAGA--GGCCCGCACGACCGATT 487
consensus_3832#2      -CTGGGACGGTTCGAGTTGCCAAGCTCGGG-CCAGAGCAGA--GGCC---GCGACCGAT- 504
consensus_3832#0      TCTCAGAACGCCCACNAGGCCAAGGTATCACCNTTGGCCGCTTGGCAGACCCAAGTNACG 597
                       **  **  *  *     ****** *     *    ** *   ***     * *   *  

consensus_3832#1      GGGGAATGGTTGGGC--AGTGAGTGGCAAACCGGGGAACGGGAAAATCCG-CTTCCAGGG 544
consensus_3832#2      -GGGAATGGT-GGGC--AGTGGG--GCAA--CGGGAA----GGAAATCCG-CTTCC--GG 549
consensus_3832#0      GGCANATTATACANCCCAAAGNNATACAAANAGCCNCCAGGGAANACNCGGCAANCGGCG 657
                       *   **  *    *  *  *     ***   *        * * *  ** *   *   *

consensus_3832#1      TCAGNCAAGNCAGGTCCCAAGAAGGCAGCNAACANTTTCCNTTTTAGCCAG-ATGAACCG 603
consensus_3832#2      TCAGAGA------GTCCCA-GCAGACA-CAAATTTCCTTTACCGCGAGCGG-GTGCGTGA 600
consensus_3832#0      CCCNCNGGGGCGAG---CAACCNGGCGGCCANCACACCCCGGGGAAACNGACGTTAAGAT 714
                       *           *   **    * *  * *                      *      

consensus_3832#1      GGTGCCGTGANAGAATCGAGCGAAA----------------------------------- 628
consensus_3832#2      GATCGAGCGAACAATCAGATTCTGCTC--------------------------------- 627
consensus_3832#0      GGCACCCCCAACAAANCGACGCGCATAACCAGGCGGNACCACCCCAACAGCNCAAGCNCC 774
                      *        *   *   **                                         

consensus_3832#1      ------------------------------------------------------------
consensus_3832#2      ------------------------------------------------------------
consensus_3832#0      CCACAGCNACAGCGGCAGGGACCACGGCGCCCACGGGCANAGACCCCCAGGCAAACTAAG 834
                                                                                  

consensus_3832#1      ------------------------------------------------------------
consensus_3832#2      ------------------------------------------------------------
consensus_3832#0      GAGCGNCGCGNAAACACACTAGGGCATAGGGCAGCANNACCACAAGCACCGTGGGACGGA 894
                                                                                  

consensus_3832#1      -
consensus_3832#2      -
consensus_3832#0      G 895