cluster # 3836

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Anopheles gambiae
cluster # 3836 cluster # 3836 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3836#0 length = 821 sequences # 2

consensus_3836#1 length = 718 sequences # 1

consensusID : consensus_3836#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 821
fasta sequence

                              [ATGATTTTTTGTTTTAACTGAAGGTACATAAAGTATTGAAAAGAACAATTACGTTTCGACTGTAAGAGCGCTGTATAGTGAGTGCCTTGGGCATTTGTTTTTAATCGGTGGCGGGTTTTGCTTTAGAACTGTAAGCGTGATAGTTGCCTCTCATTCCCAATAGGGATATTAGTTTATGCTTTCCCGGAGGAGGAATCGGTAGTTTGGTCACACGCATCCGTTTATGCGCACTCGGCTCGGTTTGATTGATCGGTTGCTAATTATGTTCTCCTTATAGTATTTAAACCATCTCTATACCCAACTTTGTATACTCTACTAATCCACATTTGCTACTACTATAACTACTACTACTACTGCTGCTAAACGTAACGCGGCATTCCCTCCCCCACCATCAAATGCGTGCGTGTTTTGCTCAGCCTTGACTTCATCGTGTCTCCCCTACCCAATGCTCCCCTATTTCGCAGGAACGTGGAATGCTGCTGCTGCTCCGTTACGCGTCCCGGTGGGGCAATGAGGCGATGCGTGGCCTCATCGATGTCACGCAAACCGACCCGGCCCGGCACTGTCGCGCATTTCAGTGCCCCTGCCAGTACGTAGAGTACCACTTGAAGTGCAAACCGCGAGGCAAGTTACGCATTTTTTACTTCTTCTATTGGCTAACGGCTTCCGAACGGTACGACTAACCCGCTGGGAGAANGTACTTTTTTCCTTCGCTCACTCCCTCNGTCGCTAGACGTGTATGGTAGTAGTATGGAGTTTGTACAACCGAGCTGTCTCTTATCTTAAACACCTTTNCCGCTTTCTCTCCGANTAACACCAAT]

[+] EMBL BX622981             [ATGATTTTTTGTTTTAACTGAAGGTACATAAAGTATTGAAAAGAACAATTACGTTTCGACTGTAAGAGCGCTGTATAGTGAGTGCCTTGGGCATTTGTTTTTAATCGGTGGCGGGTTTTGCTTTAGAACTGTAAGCGTGATAGTTGCCTCTCATTCCCAATAGGGATATTAGTTTATGCTTTCCCGGAGGAGGAATCGGTAGTTTGGTCACACGCATCCGTTTATGCGCACTCGGCTCGGTTTGATTGATCGGTTGCTAATTATGTTCTCCTTATAGTATTTAAACCATCTCTATACCCAACTTTGTATACTCTACTAATCCACATTTGCTACTACTATAACTACTACTACTACTGCTGCTAAACGTAACGCGGCATTCCCTCCCCCACCATCAAATGCGTGCGTGTTTTGCTCAGCCTTGACTTCATCGTGTCTCCCCTACCCAATGCTCCCCTATTTCGCAGGAACGTGGAATGCTGCTGCTGCTCCGTTACGCGTCCCGGTGGGGCAATGAGGCGATGCGTGGCCTCATCGATGTCACGCAAACCGACCCGGCCCGGCACTGTCGCGCATTTCAGTGCCCCTGCCAGTACGTAGAGTACCACTTGAAGTGCAAACCGCGAGGCAAGTTACGCATTTTTTACTTCTTCTATTGGCTAACGGCTTCCGAACGGTACGACTAACCCGCTGGGAGAANGTACTTTTTTCCTTCGCTCACTCCCTCNGTCGCT                                                                                          ]
[+] EMBL BX625574             [ TGATTTTTTGTTTTAACTGAAGGTACATAAAGTATTGAAAAGAACAATTACGTTTCGACTGTAAGAGCGCTGTATAGTGAGTGCCTTGGGCATTTGTTTTTAATCGGTGGCGGGTTTTGCTTTAGAACTGTAAGCGTGATAGTTGCCTCTCATTCCCAATAGGGATATTAGTTTATGCTTTCCCGGAGGAGGAATCGGTAGTTTGGTCACACGCATCCGTTTATGCGCACTCGGCTCGGTTTGATTGATCGGTTGCTAATTATGTTCTCCTTATAGTATTTAAACCATCTCTATACCCAACTTTGTATACTCTACTAATCCACATTTGCTACTACTATAACTACTACTACTACTGCTGCTAAACGTAACGCGGCATTCCCTCCCCCACCATCAAATGCGTGCGTGTTTTGCTCAGCCTTGACTTCATCGTGTCTCCCCTACCCAATGCTCCCCTATTTCGCAGGAACGTGGAATGCTGCTGCTGCTCCGTTACGCGTCCCGGTGGGGCAATGAGGCGATGCGTGGCCTCATCGATGTCACGCAAACCGACCCGGCCCGGCACTGTCGCGCATTTCAGTGCCCCTGCCAGTACGTAGAGTACCACTTGAAGTGCAAACCGCGAGGCAAGTTACGCATTTTTTACTTCTTCTATTGGCTAACGGCTTCCGAACGGTACGACTAACCCGCTGGGAGAAGGTACTTTTTTCCTTCGCTCACTCCCTCGGTCGCTAGACGTGTATGGTAGTAGTATGGAGTTTGTACAACCGAGCTGTCTCTTATCTTAAACACCTTTNCCGCTTTCTCTCCGANTAACACCAAT]




>consensus_3836#0
ATGATTTTTTGTTTTAACTGAAGGTACATAAAGTATTGAAAAGAACAATTACGTTTCGAC
TGTAAGAGCGCTGTATAGTGAGTGCCTTGGGCATTTGTTTTTAATCGGTGGCGGGTTTTG
CTTTAGAACTGTAAGCGTGATAGTTGCCTCTCATTCCCAATAGGGATATTAGTTTATGCT
TTCCCGGAGGAGGAATCGGTAGTTTGGTCACACGCATCCGTTTATGCGCACTCGGCTCGG
TTTGATTGATCGGTTGCTAATTATGTTCTCCTTATAGTATTTAAACCATCTCTATACCCA
ACTTTGTATACTCTACTAATCCACATTTGCTACTACTATAACTACTACTACTACTGCTGC
TAAACGTAACGCGGCATTCCCTCCCCCACCATCAAATGCGTGCGTGTTTTGCTCAGCCTT
GACTTCATCGTGTCTCCCCTACCCAATGCTCCCCTATTTCGCAGGAACGTGGAATGCTGC
TGCTGCTCCGTTACGCGTCCCGGTGGGGCAATGAGGCGATGCGTGGCCTCATCGATGTCA
CGCAAACCGACCCGGCCCGGCACTGTCGCGCATTTCAGTGCCCCTGCCAGTACGTAGAGT
ACCACTTGAAGTGCAAACCGCGAGGCAAGTTACGCATTTTTTACTTCTTCTATTGGCTAA
CGGCTTCCGAACGGTACGACTAACCCGCTGGGAGAANGTACTTTTTTCCTTCGCTCACTC
CCTCNGTCGCTAGACGTGTATGGTAGTAGTATGGAGTTTGTACAACCGAGCTGTCTCTTA
TCTTAAACACCTTTNCCGCTTTCTCTCCGANTAACACCAAT

consensusID : consensus_3836#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 718
fasta sequence

                              [CCCGAGGTTNAGCGCGGGTACGCATGACGTCGGACGGTGCGAGTTGGCGACTTTTCCTCGAGAAAACAACTGGAACGGTGTACACCTAGGCCCCGCCAGAGCCTCTTTGAAGCAGGAACGTGGAATGCTGCTGCTGCTCCGTTACGCGTCCGGTGGGGCAATGAGGCGATGCGTGGCCTCATCGATAGTCACGCAAACCGACCCGGCCCGGCACTGTCGCGCATTTCAGTGCCCCTGCCAGTACGTAGAGTACCACTTGAAGTGCAAACCGCGAGGACTGTGCACGCTTTCTCCCGTCAATTCTTATCCCCATTACTAGGACGACCTGTGTGTGTGTGGACACTACTACTCTAAGCTTAGCGAGTTTATCCTCATTTCCCATTATACTACTTATAATAGCTACCCGTGCAGTATAGCTGTGCATTAATAGCTGATCCACACTATCAGTACAGATACTAGAGTCTCCAGCACTCCAACCGGTCTCTCTTGTGCACTGGGTCTTCCGGAACAGGAAACCCCATCCGCTTCCCCAAAATACACAACAGAAGAACTCGGGTGCTCCCCCAAGTCCCCCCCATGCATATCAAACACAAATGGTAATATCTACCCTATCGTCTCTTAATCTATAACTGTGNTGTATGATGTTAACCGTNTGTCTCTGGACACCCTGCTATCATGCGCGCTGCACTATCCACTGGCACACTGCCANNCGCCNCCC]

[+] EMBL AL694697             [CCCGAGGTTNAGCGCGGGTACGCATGACGTCGGACGGTGCGAGTTGGCGACTTTTCCTCGAGAAAACAACTGGAACGGTGTACACCTAGGCCCCGCCAGAGCCTCTTTGAAGCAGGAACGTGGAATGCTGCTGCTGCTCCGTTACGCGTCCGGTGGGGCAATGAGGCGATGCGTGGCCTCATCGATAGTCACGCAAACCGACCCGGCCCGGCACTGTCGCGCATTTCAGTGCCCCTGCCAGTACGTAGAGTACCACTTGAAGTGCAAACCGCGAGGACTGTGCACGCTTTCTCCCGTCAATTCTTATCCCCATTACTAGGACGACCTGTGTGTGTGTGGACACTACTACTCTAAGCTTAGCGAGTTTATCCTCATTTCCCATTATACTACTTATAATAGCTACCCGTGCAGTATAGCTGTGCATTAATAGCTGATCCACACTATCAGTACAGATACTAGAGTCTCCAGCACTCCAACCGGTCTCTCTTGTGCACTGGGTCTTCCGGAACAGGAAACCCCATCCGCTTCCCCAAAATACACAACAGAAGAACTCGGGTGCTCCCCCAAGTCCCCCCCATGCATATCAAACACAAATGGTAATATCTACCCTATCGTCTCTTAATCTATAACTGTGNTGTATGATGTTAACCGTNTGTCTCTGGACACCCTGCTATCATGCGCGCTGCACTATCCACTGGCACACTGCCANNCGCCNCCC]




>consensus_3836#1
CCCGAGGTTNAGCGCGGGTACGCATGACGTCGGACGGTGCGAGTTGGCGACTTTTCCTCG
AGAAAACAACTGGAACGGTGTACACCTAGGCCCCGCCAGAGCCTCTTTGAAGCAGGAACG
TGGAATGCTGCTGCTGCTCCGTTACGCGTCCGGTGGGGCAATGAGGCGATGCGTGGCCTC
ATCGATAGTCACGCAAACCGACCCGGCCCGGCACTGTCGCGCATTTCAGTGCCCCTGCCA
GTACGTAGAGTACCACTTGAAGTGCAAACCGCGAGGACTGTGCACGCTTTCTCCCGTCAA
TTCTTATCCCCATTACTAGGACGACCTGTGTGTGTGTGGACACTACTACTCTAAGCTTAG
CGAGTTTATCCTCATTTCCCATTATACTACTTATAATAGCTACCCGTGCAGTATAGCTGT
GCATTAATAGCTGATCCACACTATCAGTACAGATACTAGAGTCTCCAGCACTCCAACCGG
TCTCTCTTGTGCACTGGGTCTTCCGGAACAGGAAACCCCATCCGCTTCCCCAAAATACAC
AACAGAAGAACTCGGGTGCTCCCCCAAGTCCCCCCCATGCATATCAAACACAAATGGTAA
TATCTACCCTATCGTCTCTTAATCTATAACTGTGNTGTATGATGTTAACCGTNTGTCTCT
GGACACCCTGCTATCATGCGCGCTGCACTATCCACTGGCACACTGCCANNCGCCNCCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3836#0      ATGATTTTTTGTTTTAACTGAAGGTACATAAAGTATTGAAAAGAACAATTACGTTTCGAC 60
consensus_3836#1      ------------------------------------------------------------
                                                                                  

consensus_3836#0      TGTAAGAGCGCTGTATAGTGAGTGCCTTGGGCATTTGTTTTTAATCGGTGGCGGGTTTTG 120
consensus_3836#1      ----CCCGAGGTTNAGCGCGGGTACGCATGACGTCGGACGGTGCGAGTTGGCGACTTTTC 56
                             * * *  *  * * ** *    * * *  *    *    * *****  **** 

consensus_3836#0      CTTTAGAACTGTAAGCGTGATAGT-TGCCTCTCATTCCCAATAGGGATATTAGTTTATGC 179
consensus_3836#1      CTCGAGAAA-ACAACTGGAACGGTGTACACCTAGGCCCCGCCAGAG-------------C 102
                      **  ****    **  *  *  ** * *  **    ***   ** *             *

consensus_3836#0      TTTCCCGGAGGAGGAATCGGTAGTTTGGTCACACGCATCCGTTTATGCGCACTCGGCTCG 239
consensus_3836#1      CTCTTTGAAGCAGGAAC--GTGGAATGCTGCTGCTGCTCCGTT---ACGCGTCCGGTGGG 157
                       *    * ** *****   ** *  ** *    *   ******    ***   ***   *

consensus_3836#0      GTTTGATTGATCGGTTGCTAATTATGTTCTCCTT-ATAGT-ATTTAAACCATCTCTATAC 297
consensus_3836#1      GC---AATGAGGCGATGC-----GTGGCCTCATCGATAGTCACGCAAACCGACCCGGCCC 209
                      *    * ***   * ***      **  *** *  ***** *   *****  * *    *

consensus_3836#0      CCAACT-TTGTATACTCTACTAATCCACATTTGCTACTACTATAACTACTACTACTACTG 356
consensus_3836#1      GGCACTGTCGCGCATTTCAGTGCCCC-----TGCCAGTACGTAGAGTACCACTTGAAGTG 264
                         *** * *   * *  * *   **     *** * ***    * *** ***   * **

consensus_3836#0      CTGCTAAACGTAACGCGGCATTCCCTCCCCCACCATCAAATGCGTGCGTGTTTTGCTCAG 416
consensus_3836#1      CAAACCGCGAGGACTGTGCACGCTTTCTCCCGTCAATTCTTATCCCCATTACTAGGACGA 324
                      *           **   ***  *  ** ***  **     *     * *   * *  *  

consensus_3836#0      CCTTGACTTCATCGTGTCTCCCCTACCCAATGCTCCCCTATTTCGCAGGAACGTGGAATG 476
consensus_3836#1      CCT-GTGTGTGTGTGGACACTACTACTCTAAGCTTAGCGAGTTTATCCTCATTTCCCATT 383
                      *** *  *   *   * * *  **** * * ***   * * **       *  *   ** 

consensus_3836#0      CTGCTGCTGCTCCGTTACGCGTCCCGGTGGGGCAATGAGGCGATGCGTGGCCTCATCGAT 536
consensus_3836#1      ATACTACT----TATAATAGCTACCCGTG---CAGTATAGCTGTGCATTAA-TAGCTGAT 435
                       * ** **      * *    * ** ***   ** *   **  *** *    *    ***

consensus_3836#0      GTCACGCAAACCGACCCGGCCCGGCACTGTCGCGCATTTCAGT-GCCCCTGCCAGTACGT 595
consensus_3836#1      -CCACACTATCAGTACAGATACTAGAGTCTCCAGCACTCCAACCGGTCTCTCTTGTGCAC 494
                        *** * * * *  * *   *   * * **  *** * **   *  *   *  ** *  

consensus_3836#0      AGAGTACCACTTGAAGTGCAAACCGCGAGGCAAGTTACGCATTTTTTACTTCTTCTATTG 655
consensus_3836#1      TGGGT-CTTCCGGAACAGGAAACCCCA--TCCGCTTCCCCAAAATACACAACAG--AAGA 549
                       * ** *  *  ***  * ***** *    *   ** * **   *  **  *    *   

consensus_3836#0      GCTAACGGCTTCCGAACGGTACGACTAACCCGCTGGGAGAANGTACTTTTTTCCTTCGCT 715
consensus_3836#1      ACTCGGGTGCTCCCCCAAGTCCCCCCCATGCATATCAAACACAAATGGTAATATCTACCC 609
                       **   *   ***     ** *  *  *  *      *  *   *   *  *   *  * 

consensus_3836#0      CACTCCCTCNGTCGCTAGACGTGTATGGTAGTAGTATGGAGTTTGTACAACCGAGCTGTC 775
consensus_3836#1      TATCGTCTCTTAATCTATAACTGTGNTGTA-TGATGTTAACCGTNTGTCTCTGGACACCC 668
                       *    ***     *** *  ***   *** *  * *  *   * *    * *  *   *

consensus_3836#0      TCTTATCTTAAACACC---TTTNCCGCTTTCTCTCCGANTAACACCAAT- 821
consensus_3836#1      TGCTATCATGCGCGCTGCACTATCCACTGGCACACTGCCANNCGCCNCCC 718
                      *  **** *   * *     *  ** **  * * * *     * **