cluster # 3838

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Anopheles gambiae
cluster # 3838 cluster # 3838 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3838#0 length = 385 sequences # 2

consensus_3838#1 length = 223 sequences # 1

consensusID : consensus_3838#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 385
fasta sequence

                              [CCGCACCTTGAAAGGAAGCACGAAATAGAAAAAAAAACTCTGGAAGAAGCTGCTTACTTATCAGCTGGGTAGAATTCTACTTTTCGACTATCGACAAAGCGGGAACAAGAAACATTTCTTCTAAAATTCAAGATGTTTCGCATGCAAGGACTTCCACCAACCGATGCCGCGGAGGAGAAACGCAAAGTACGGCAAGCCGTTCAACAAAATTTGTTCGCCTTTGTGACTCTTTGCGTAGCCATACGAATAGCATCCGTTTTAATGGAGCAGTAGGACGACAGTCGGGAGGACATTTGCAGTTGCAATTTATCATTTAATAAAGCTTTGTTCTGTTCTTTGTAAGAACACTGTAATACACTGAAAAAAAAAAAAAAAAAAAAAAAAG]

[+] EMBL BM608960             [CCGCACCTTGAAAGGAAGCACGAAATAGAAAAAAAAACTCTGGAAGAAGCTGCTTACTTATCAGCTGGGTAGAATTCTACTTTTCGACTATCGACAAAGCGGGAACAAGAAACATTTCTTCTAAAATTCAAGATGTTTCGCATGCAAGGACTTCCACCAACCGATGCCGCGGAGGAGAAACGCAAAGTACGGCAAGCCGTTCAACAAAATTTGTTCGCCTTTGTGACTCTTTGCGTAGCCATACGAATAGCATCCGTTTTAATGGAGCAGTAGGACGACAGTCGGGAGGACATTTGCAGTTGCAATTTATCATTTAATAAAGCTTTGTTCTGTTCTTTGTAAGAACACTGTAATACACTG                         ]
[+] EMBL CNS08RT1             [                                                                                                AAGCGGGAACAAGAAACATTTCTTCTAAAATTCAAGATGTTTCGCATGCAAGGCCTTCCACCAACCGATGCCGCGGAGGGGAAACGCAAAGTACGGCAAGCCGTTCAACAAAATTTGTTCGCCTTTGTGACTCTTTGCGTAG CATACGAATAGCATCCGTTTTAATGGAGCAGTAGGACGACAGTCGGGA GACATTTGCAGTTGCAATTTATCATTTAATAAAGCTTTGTTCTGTTCTTTGTAAGAACACTGTAATACACTGAAAAAAAAAAAAAAAAAAAAAAAAG]




>consensus_3838#0
CCGCACCTTGAAAGGAAGCACGAAATAGAAAAAAAAACTCTGGAAGAAGCTGCTTACTTA
TCAGCTGGGTAGAATTCTACTTTTCGACTATCGACAAAGCGGGAACAAGAAACATTTCTT
CTAAAATTCAAGATGTTTCGCATGCAAGGACTTCCACCAACCGATGCCGCGGAGGAGAAA
CGCAAAGTACGGCAAGCCGTTCAACAAAATTTGTTCGCCTTTGTGACTCTTTGCGTAGCC
ATACGAATAGCATCCGTTTTAATGGAGCAGTAGGACGACAGTCGGGAGGACATTTGCAGT
TGCAATTTATCATTTAATAAAGCTTTGTTCTGTTCTTTGTAAGAACACTGTAATACACTG
AAAAAAAAAAAAAAAAAAAAAAAAG

consensusID : consensus_3838#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 223
fasta sequence

                              [CCGCGGACGCGTGGGTTCCACCAACCGATGCCGCGGAGGAGAAACGCAAAGTACGGCAAGCCGTTCAACAAAATTTGTTCGCCTTTGTGACTCTTTGCGTAGCCATACGAATAGCATCCGTTTTAATGGAGCAGTAGGACGACAGTCGGGAGACATTTGCAGTTGCAATTTATCATTTAATAAAGCTTTGTTCTGTTCTTTGTAAGAACACTGTAATACACTG]

[+] EMBL BM603572             [CCGCGGACGCGTGGGTTCCACCAACCGATGCCGCGGAGGAGAAACGCAAAGTACGGCAAGCCGTTCAACAAAATTTGTTCGCCTTTGTGACTCTTTGCGTAGCCATACGAATAGCATCCGTTTTAATGGAGCAGTAGGACGACAGTCGGGAGACATTTGCAGTTGCAATTTATCATTTAATAAAGCTTTGTTCTGTTCTTTGTAAGAACACTGTAATACACTG]




>consensus_3838#1
CCGCGGACGCGTGGGTTCCACCAACCGATGCCGCGGAGGAGAAACGCAAAGTACGGCAAG
CCGTTCAACAAAATTTGTTCGCCTTTGTGACTCTTTGCGTAGCCATACGAATAGCATCCG
TTTTAATGGAGCAGTAGGACGACAGTCGGGAGACATTTGCAGTTGCAATTTATCATTTAA
TAAAGCTTTGTTCTGTTCTTTGTAAGAACACTGTAATACACTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3838#0      CCGCACCTTGAAAGGAAGCACGAAATAGAAAAAAAAACTCTGGAAGAAGCTGCTTACTTA 60
consensus_3838#1      ------------------------------------------------------------
                                                                                  

consensus_3838#0      TCAGCTGGGTAGAATTCTACTTTTCGACTATCGACAAAGCGGGAACAAGAAACATTTCTT 120
consensus_3838#1      ------------------------------------------------------------
                                                                                  

consensus_3838#0      CTAAAATTCAAGATGTTTCGCATGCAAGGACTTCCACCAACCGATGCCGCGGAGGAGAAA 180
consensus_3838#1      ---------------CCGCGGACGCGTGGG-TTCCACCAACCGATGCCGCGGAGGAGAAA 44
                                        ** * **  **  *****************************

consensus_3838#0      CGCAAAGTACGGCAAGCCGTTCAACAAAATTTGTTCGCCTTTGTGACTCTTTGCGTAGCC 240
consensus_3838#1      CGCAAAGTACGGCAAGCCGTTCAACAAAATTTGTTCGCCTTTGTGACTCTTTGCGTAGCC 104
                      ************************************************************

consensus_3838#0      ATACGAATAGCATCCGTTTTAATGGAGCAGTAGGACGACAGTCGGGAGGACATTTGCAGT 300
consensus_3838#1      ATACGAATAGCATCCGTTTTAATGGAGCAGTAGGACGACAGTCGGGAG-ACATTTGCAGT 163
                      ************************************************ ***********

consensus_3838#0      TGCAATTTATCATTTAATAAAGCTTTGTTCTGTTCTTTGTAAGAACACTGTAATACACTG 360
consensus_3838#1      TGCAATTTATCATTTAATAAAGCTTTGTTCTGTTCTTTGTAAGAACACTGTAATACACTG 223
                      ************************************************************

consensus_3838#0      AAAAAAAAAAAAAAAAAAAAAAAAG 385
consensus_3838#1      -------------------------