cluster # 3839

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Anopheles gambiae
cluster # 3839 cluster # 3839 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3839#0 length = 695 sequences # 2

consensus_3839#1 length = 315 sequences # 1

consensusID : consensus_3839#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 695
fasta sequence

                              [CCGGACGTTGAGGTGCTAGAGCAAAGCTGAAGCATAATAATTGCAAAAAAAAGAAAAGAAAAACAATATAAAGAAGAAAAACATAATAATAGTGAACGAAAAACACTACAACCCACGCCAGCAAAGCGACAATGTGGAAAAAGCCCACAGTTAGTGTATTTTTGTTTTAAAATCGTTCCTCTTTCTCTATCATTGCAATGTTGCAGTGTGTTTTTCGGTTCTCTCCTCCGCTCAACGCTTGGCGCCTGGGTGAGAGCGCAAGCAGATGAAGCAGCAAGCAAGCAAAAGAAAAAAATGAAGAAACAAAATGGAAAATGAACGAAACAAAAAGAAGAAAAAAAAACACATAAAATCGGTCCCCGAGAAAATAAAATAAAGTCCACAACACTTTTAGACCTCTGTAACGAAACAGCAAAAGCAAATATATACACACACACACACACACACACACAAACTCCTACTCACACATATACACATAGAAAGCAACAAAAAGTAAAAAAAAAAACAAACAAACAAATGACAAAAATAACAAAGCGAAAAACGGAGAAAGCAAAACATGGCACTGGCACTGGCTGGTGGGCCAAAAGTTGCGCGCGTATTATTGTAAAACCACAACGTGGAGTGAAAAGAAGAAAAAAAAAAACACACACACACACAGTAGGAAAATGCATAAAATAAAATCATAGAAAATGCTG]

[+] EMBL BM619904             [CCGGACGTTGAGGTGCTAGAGCAAAGCTGAAGCATAATAATTGCAAAAAAAAGAAAAGAAAAACAATATAAAGAAGAAAAACATAATAATAGTGAACGAAAAACACTACAACCCACGCCAGCAAAGCGACAATGTGGAAAAAGCCCACAGTTAGTGTATTTTTGTTTTAAAATCGTTCCTCTTTCTCTATCATTGCAATGTTGCAGTGTGTTTTTCGGTTCTCTCCTCCGCTCAACGCTTGGCGCCTGGGTGAGAGCGCAAGCAGATGAAGCAGCAAGCAAGCAAAAGAAAAAAATGAAGAAACAAAATGGAAAATGAACGAAACAAAAAGAAGAAAAAAAAACACATAAAATCGGTCCCCGAGAAAATAAAATAAAGTCCACAACACTTTTAGACCTCTGTAACGAAACAGCAAAAGCAAATATATACACACACACACACACACACACACAAACTCCTACTCACACATATACACATAGAAAGCAACAAAAAGTAAAAAAAAAAACAAACAAACAAATGACAAAAATAACAAAGCGAAAAACGGAGAAAGCAAAACA                                                                                                                                          ]
[+] EMBL BM603518             [                                                                                                                                                                                                          ccgGTGTGTTTTTCGGTTCTCTCCTCCGCTCAACGCTTGGCGCCTGGGTGAGAGCGCAAGCAGATGAAGCAGCAAGCAAGCAAAAGAAAAAAATGAAGAAACAAAATGGAAAATGAACGAAACAAAAAGAAGAAAAAAAAACACATAAAATCGGTCCCCGAGAAAATAAAATAAAGTCCACAACACTTTTAGACCTCTGTAACGAAACAGCAAAAGCAAATATATACACACACACACACACACACACACAAACTCCTACTCACACATATACACATAGAAAGCAACAAAAAGTAAAAAAAAAAACAAACAAACAAATGACAAAAATAACAAAGCGAAAAACGGAGAAAGCAAAACATGGCACTGGCACTGGCTGGTGGGCCAAAAGTTGCGCGCGTATTATTGTAAAACCACAACGTGGAGTGAAAAGAAGAAAAAAAAAAACACACACACACACAGTAGGAAAATGCATAAAATAAAATCATAGAAAATGCTG]




>consensus_3839#0
CCGGACGTTGAGGTGCTAGAGCAAAGCTGAAGCATAATAATTGCAAAAAAAAGAAAAGAA
AAACAATATAAAGAAGAAAAACATAATAATAGTGAACGAAAAACACTACAACCCACGCCA
GCAAAGCGACAATGTGGAAAAAGCCCACAGTTAGTGTATTTTTGTTTTAAAATCGTTCCT
CTTTCTCTATCATTGCAATGTTGCAGTGTGTTTTTCGGTTCTCTCCTCCGCTCAACGCTT
GGCGCCTGGGTGAGAGCGCAAGCAGATGAAGCAGCAAGCAAGCAAAAGAAAAAAATGAAG
AAACAAAATGGAAAATGAACGAAACAAAAAGAAGAAAAAAAAACACATAAAATCGGTCCC
CGAGAAAATAAAATAAAGTCCACAACACTTTTAGACCTCTGTAACGAAACAGCAAAAGCA
AATATATACACACACACACACACACACACACAAACTCCTACTCACACATATACACATAGA
AAGCAACAAAAAGTAAAAAAAAAAACAAACAAACAAATGACAAAAATAACAAAGCGAAAA
ACGGAGAAAGCAAAACATGGCACTGGCACTGGCTGGTGGGCCAAAAGTTGCGCGCGTATT
ATTGTAAAACCACAACGTGGAGTGAAAAGAAGAAAAAAAAAAACACACACACACACAGTA
GGAAAATGCATAAAATAAAATCATAGAAAATGCTG

consensusID : consensus_3839#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 315
fasta sequence

                              [GCCGCCAGGTGGTCAGCAAGTAGCATGTATTATTAGTAGCAGAATAAAACACAATAAACAAAACAAATGACAAAAATAACAAAGCGAAAAACGGGGAAAGCAAAACATGGCACTGGCACTGGCTGGTGGGCCAAAAGTTGCGCGCGCATTATTGTAAAACCACAACGTGGAGTGAAAAGAAGAAAAAAAAACACACACACACACAGTAGGAAAATGCATAAAATAAAATCATAGAAAATGCTGAAAGAAAGAAAAAAAAACGCAGCCCGCAGTAGATAAGAAAATAGGCAAATTTTCAAAGAAAAACCAACCCCC]

[+] EMBL BX620709             [GCCGCCAGGTGGTCAGCAAGTAGCATGTATTATTAGTAGCAGAATAAAACACAATAAACAAAACAAATGACAAAAATAACAAAGCGAAAAACGGGGAAAGCAAAACATGGCACTGGCACTGGCTGGTGGGCCAAAAGTTGCGCGCGCATTATTGTAAAACCACAACGTGGAGTGAAAAGAAGAAAAAAAAACACACACACACACAGTAGGAAAATGCATAAAATAAAATCATAGAAAATGCTGAAAGAAAGAAAAAAAAACGCAGCCCGCAGTAGATAAGAAAATAGGCAAATTTTCAAAGAAAAACCAACCCCC]




>consensus_3839#1
GCCGCCAGGTGGTCAGCAAGTAGCATGTATTATTAGTAGCAGAATAAAACACAATAAACA
AAACAAATGACAAAAATAACAAAGCGAAAAACGGGGAAAGCAAAACATGGCACTGGCACT
GGCTGGTGGGCCAAAAGTTGCGCGCGCATTATTGTAAAACCACAACGTGGAGTGAAAAGA
AGAAAAAAAAACACACACACACACAGTAGGAAAATGCATAAAATAAAATCATAGAAAATG
CTGAAAGAAAGAAAAAAAAACGCAGCCCGCAGTAGATAAGAAAATAGGCAAATTTTCAAA
GAAAAACCAACCCCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3839#0      CCGGACGTTGAGGTGCTAGAGCAAAGCTGAAGCATAATAATTGCAAAAAAAAGAAAAGAA 60
consensus_3839#1      ------------------------------------------------------------
                                                                                  

consensus_3839#0      AAACAATATAAAGAAGAAAAACATAATAATAGTGAACGAAAAACACTACAACCCACGCCA 120
consensus_3839#1      ------------------------------------------------------------
                                                                                  

consensus_3839#0      GCAAAGCGACAATGTGGAAAAAGCCCACAGTTAGTGTATTTTTGTTTTAAAATCGTTCCT 180
consensus_3839#1      ------------------------------------------------------------
                                                                                  

consensus_3839#0      CTTTCTCTATCATTGCAATGTTGCAGTGTGTTTTTCGGTTCTCTCCTCCGCTCAACGCTT 240
consensus_3839#1      ------------------------------------------------------------
                                                                                  

consensus_3839#0      GGCGCCTGGGTGAGAGCGCAAGCAGATGAAGCAGCAAGCAAGCAAAAGAAAAAAATGAAG 300
consensus_3839#1      ------------------------------------------------------------
                                                                                  

consensus_3839#0      AAACAAAATGGAAAATGAACGAAACAAAAAGAAGAAAAAAAAACACATAAAATCGGTCCC 360
consensus_3839#1      ------------------------------------------------------------
                                                                                  

consensus_3839#0      CGAGAAAATAAAATAAAGTCCACAACACTTTTAGACCTCTGTAACGAAACAGCAAAAGCA 420
consensus_3839#1      ------------------------------------------------------------
                                                                                  

consensus_3839#0      AATATATACACACACACACACACACACACACAAACTCCTACTCACACATATACACATAGA 480
consensus_3839#1      --------------------------GCCGCCAGGTGGTCAGCAAGTA-GCATGTATTAT 33
                                                  * * *  *  *   **   *   *   **   

consensus_3839#0      AAGCAACAAAAAGTAAAAAAAAAAACAAACAAACAAATGACAAAAATAACAAAGCGAAAA 540
consensus_3839#1      TAGTAGCAGAATAAAACACAATAAACA---AAACAAATGACAAAAATAACAAAGCGAAAA 90
                       ** * ** **   ** * ** *****   ******************************

consensus_3839#0      ACGGAGAAAGCAAAACATGGCACTGGCACTGGCTGGTGGGCCAAAAGTTGCGCGCGTATT 600
consensus_3839#1      ACGGGGAAAGCAAAACATGGCACTGGCACTGGCTGGTGGGCCAAAAGTTGCGCGCGCATT 150
                      **** *************************************************** ***

consensus_3839#0      ATTGTAAAACCACAACGTGGAGTGAAAAGAAGAAAAAAAAAAACACACACACACACAGTA 660
consensus_3839#1      ATTGTAAAACCACAACGTGGAGTGAAAAGAAGAAAAAAAA--ACACACACACACACAGTA 208
                      ****************************************  ******************

consensus_3839#0      GGAAAATGCATAAAATAAAATCATAGAAAATGCTG------------------------- 695
consensus_3839#1      GGAAAATGCATAAAATAAAATCATAGAAAATGCTGAAAGAAAGAAAAAAAAACGCAGCCC 268
                      ***********************************                         

consensus_3839#0      -----------------------------------------------
consensus_3839#1      GCAGTAGATAAGAAAATAGGCAAATTTTCAAAGAAAAACCAACCCCC 315