cluster # 3841

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Anopheles gambiae
cluster # 3841 cluster # 3841 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3841#0 length = 708 sequences # 1

consensus_3841#1 length = 655 sequences # 1
consensus_3841#2 length = 610 sequences # 1

consensusID : consensus_3841#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 708
fasta sequence

                              [CCGCGGACGCGTGGGCTGCATCGAAGCAACCGACCGCTGCCACGACGGCTGGCATTGCGAAAAAAGAAAGCCAAGCAGCAGCAGGCGGTGCCGGGCGTGGTTCCAGAACAGCAGCACAAGCAGCAAAATGGCGCCACCGGCGCCGAACCGAAGAAGAAAGCGTCGAAAAAAGGGCGCACCGCCAAGGTGAACGGCGGTGCGGTTGGTTTGCCGCCGACGAGTGTCGTTACGCCGCTGAAGCGCGCCTCCCAGATCAAGCAGGAACCAAAGACACCGAGCAGGGCGGCCCATTCACCCATCGTCGGCGGCACCTCCTCCTCCACCACCACTGCCAGCCCGGCCGGCACGGCCCTGCACGAGCTGGACAGTGTGACGATTGGGCGCCAGACGTTCGCGTGGCTCATCGGCCCCACCATATCGGTGGACGAGTTTATGCGCACGCACTGGGAGCGGAAGCCGCTGCTGGTGCAGCGCAACGACCGCGCGTACTATGCCGGCCTGCTGTCCCGCGCCATGATCGACGAGATGCTGCGCACGAACAACATCGAGTACACGAAAAACATCGACATCACGTCGTTACCGGGACGGGCAGCGCGAGACGCACAATCCGGGACGGGCGCGTGCTCCCGCCCGACCTGTGGCATTTCTACGACGCCGGCTGCAGCGTGCGCATGCTCAACCCGCAAACCTACCTGCGCTCCGTGTACG]

[+] EMBL BM603376             [CCGCGGACGCGTGGGCTGCATCGAAGCAACCGACCGCTGCCACGACGGCTGGCATTGCGAAAAAAGAAAGCCAAGCAGCAGCAGGCGGTGCCGGGCGTGGTTCCAGAACAGCAGCACAAGCAGCAAAATGGCGCCACCGGCGCCGAACCGAAGAAGAAAGCGTCGAAAAAAGGGCGCACCGCCAAGGTGAACGGCGGTGCGGTTGGTTTGCCGCCGACGAGTGTCGTTACGCCGCTGAAGCGCGCCTCCCAGATCAAGCAGGAACCAAAGACACCGAGCAGGGCGGCCCATTCACCCATCGTCGGCGGCACCTCCTCCTCCACCACCACTGCCAGCCCGGCCGGCACGGCCCTGCACGAGCTGGACAGTGTGACGATTGGGCGCCAGACGTTCGCGTGGCTCATCGGCCCCACCATATCGGTGGACGAGTTTATGCGCACGCACTGGGAGCGGAAGCCGCTGCTGGTGCAGCGCAACGACCGCGCGTACTATGCCGGCCTGCTGTCCCGCGCCATGATCGACGAGATGCTGCGCACGAACAACATCGAGTACACGAAAAACATCGACATCACGTCGTTACCGGGACGGGCAGCGCGAGACGCACAATCCGGGACGGGCGCGTGCTCCCGCCCGACCTGTGGCATTTCTACGACGCCGGCTGCAGCGTGCGCATGCTCAACCCGCAAACCTACCTGCGCTCCGTGTACG]




>consensus_3841#0
CCGCGGACGCGTGGGCTGCATCGAAGCAACCGACCGCTGCCACGACGGCTGGCATTGCGA
AAAAAGAAAGCCAAGCAGCAGCAGGCGGTGCCGGGCGTGGTTCCAGAACAGCAGCACAAG
CAGCAAAATGGCGCCACCGGCGCCGAACCGAAGAAGAAAGCGTCGAAAAAAGGGCGCACC
GCCAAGGTGAACGGCGGTGCGGTTGGTTTGCCGCCGACGAGTGTCGTTACGCCGCTGAAG
CGCGCCTCCCAGATCAAGCAGGAACCAAAGACACCGAGCAGGGCGGCCCATTCACCCATC
GTCGGCGGCACCTCCTCCTCCACCACCACTGCCAGCCCGGCCGGCACGGCCCTGCACGAG
CTGGACAGTGTGACGATTGGGCGCCAGACGTTCGCGTGGCTCATCGGCCCCACCATATCG
GTGGACGAGTTTATGCGCACGCACTGGGAGCGGAAGCCGCTGCTGGTGCAGCGCAACGAC
CGCGCGTACTATGCCGGCCTGCTGTCCCGCGCCATGATCGACGAGATGCTGCGCACGAAC
AACATCGAGTACACGAAAAACATCGACATCACGTCGTTACCGGGACGGGCAGCGCGAGAC
GCACAATCCGGGACGGGCGCGTGCTCCCGCCCGACCTGTGGCATTTCTACGACGCCGGCT
GCAGCGTGCGCATGCTCAACCCGCAAACCTACCTGCGCTCCGTGTACG

consensusID : consensus_3841#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 655
fasta sequence

                              [CCGGGCGCGTGTTGTGGAACACAGCTTCACACCCCTCGTCGCTCCGTGTTGCGCGAAAAACAGAAGCGCGTGCGATTATTCCCTTCCGTAAAGCAAAACGCAACGCTTGCCACCCAGTTCCGCACGATGGAAACAGCCACCGCCACCCCAGGCCCTCCCGAGCTGGTCCTCCCGAAGGATGAACCCGGCGCCGGGAATGGTGTGACGCCGGGTGGCGCTACCATCACCACCAGCACACCGCTAACCGGAAGCAACAAAAAGCCACCGCAGAAAAGGAAAAAACCGGCAGCCTCTCCGCAACCCTCCCCGAGCACAAAGCCAAAGCAGGACAGTGAGCCTGCTGCCGCTGACGGTAGCACCACCAACGGTGAACAGGTGCGGCCAGTGCCGGAAGGATCGTCCCAAGCGGAACCTGCATCCGTGGTGAAAAAGCAGAAGAAAAAGCACACTGAAGAGGGAAAGCAAACGACGACGTCGACGTCGACGACGCCACCGGGAAAGAAGCAAAAAGGGGCCACCGGCAAACATGTGCGCTTTCACATTAAGCTGTATTCCGCATCGAAGCAACCGACCGCTGCCACGACGGCTGGCATTGCGAAGAAAAAGAAAGCTAAGCAGCAGCAGGCGGTGCCGGGCGTGGGTTCCAGAACAGCAG]

[+] EMBL BM604670             [CCGGGCGCGTGTTGTGGAACACAGCTTCACACCCCTCGTCGCTCCGTGTTGCGCGAAAAACAGAAGCGCGTGCGATTATTCCCTTCCGTAAAGCAAAACGCAACGCTTGCCACCCAGTTCCGCACGATGGAAACAGCCACCGCCACCCCAGGCCCTCCCGAGCTGGTCCTCCCGAAGGATGAACCCGGCGCCGGGAATGGTGTGACGCCGGGTGGCGCTACCATCACCACCAGCACACCGCTAACCGGAAGCAACAAAAAGCCACCGCAGAAAAGGAAAAAACCGGCAGCCTCTCCGCAACCCTCCCCGAGCACAAAGCCAAAGCAGGACAGTGAGCCTGCTGCCGCTGACGGTAGCACCACCAACGGTGAACAGGTGCGGCCAGTGCCGGAAGGATCGTCCCAAGCGGAACCTGCATCCGTGGTGAAAAAGCAGAAGAAAAAGCACACTGAAGAGGGAAAGCAAACGACGACGTCGACGTCGACGACGCCACCGGGAAAGAAGCAAAAAGGGGCCACCGGCAAACATGTGCGCTTTCACATTAAGCTGTATTCCGCATCGAAGCAACCGACCGCTGCCACGACGGCTGGCATTGCGAAGAAAAAGAAAGCTAAGCAGCAGCAGGCGGTGCCGGGCGTGGGTTCCAGAACAGCAG]




>consensus_3841#1
CCGGGCGCGTGTTGTGGAACACAGCTTCACACCCCTCGTCGCTCCGTGTTGCGCGAAAAA
CAGAAGCGCGTGCGATTATTCCCTTCCGTAAAGCAAAACGCAACGCTTGCCACCCAGTTC
CGCACGATGGAAACAGCCACCGCCACCCCAGGCCCTCCCGAGCTGGTCCTCCCGAAGGAT
GAACCCGGCGCCGGGAATGGTGTGACGCCGGGTGGCGCTACCATCACCACCAGCACACCG
CTAACCGGAAGCAACAAAAAGCCACCGCAGAAAAGGAAAAAACCGGCAGCCTCTCCGCAA
CCCTCCCCGAGCACAAAGCCAAAGCAGGACAGTGAGCCTGCTGCCGCTGACGGTAGCACC
ACCAACGGTGAACAGGTGCGGCCAGTGCCGGAAGGATCGTCCCAAGCGGAACCTGCATCC
GTGGTGAAAAAGCAGAAGAAAAAGCACACTGAAGAGGGAAAGCAAACGACGACGTCGACG
TCGACGACGCCACCGGGAAAGAAGCAAAAAGGGGCCACCGGCAAACATGTGCGCTTTCAC
ATTAAGCTGTATTCCGCATCGAAGCAACCGACCGCTGCCACGACGGCTGGCATTGCGAAG
AAAAAGAAAGCTAAGCAGCAGCAGGCGGTGCCGGGCGTGGGTTCCAGAACAGCAG

consensusID : consensus_3841#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 610
fasta sequence

                              [GACCCACGCGTCCGCCCACGCGTCCGGCACTGGGAACGGAAGCCGCTGCTGGTGCAGCGCAGCGACCGCGCGTACTATGCCGGCCTGCTGTCCCGCGGATGATCGACGAGATGCTGCGCACGAACAACATCGAGTACACGAAAAACATCGACATCACGTCGTACCGGGACGGGCAGCGCGAGACGCACAATCCGGACGGGCGCGTGCTACCGCCCGACCTGTGGCACTTCTACGACGCCGGCTGCAGCGTGCGCATGCTCAACCCGCAAACCTACCTGCGCTCCGTGTACGAGCTGAACGTGAAGCTGCAGGAGTACTTCCACTGCATGACGGGGGCGAACTTCTACCTGACGCCGCCGGGCAGCCAGGGCTTCGCGCCGCACTACGACGACATCGAGGCGTTTGTGCTGCAGATCGAGGGCCGCAAGCGCTGGCGCCTGTACGGGCCCCGCCAGCCGCAGGAGGTGCTGGCGCGCGTGTCGTCGGAAAACCTGCGCCAGGACGAGCTGGCCGGGCCGCCCATCGTCGACGTGGTGCTGGAGGCGGGCGATCTGCTGTACTTTCCGCGCGGCTGCATCCACCAGGCGGCCACCGTGCCGGGCGGCCACTC]

[+] EMBL BM644647             [GACCCACGCGTCCGCCCACGCGTCCGGCACTGGGAACGGAAGCCGCTGCTGGTGCAGCGCAGCGACCGCGCGTACTATGCCGGCCTGCTGTCCCGCGGATGATCGACGAGATGCTGCGCACGAACAACATCGAGTACACGAAAAACATCGACATCACGTCGTACCGGGACGGGCAGCGCGAGACGCACAATCCGGACGGGCGCGTGCTACCGCCCGACCTGTGGCACTTCTACGACGCCGGCTGCAGCGTGCGCATGCTCAACCCGCAAACCTACCTGCGCTCCGTGTACGAGCTGAACGTGAAGCTGCAGGAGTACTTCCACTGCATGACGGGGGCGAACTTCTACCTGACGCCGCCGGGCAGCCAGGGCTTCGCGCCGCACTACGACGACATCGAGGCGTTTGTGCTGCAGATCGAGGGCCGCAAGCGCTGGCGCCTGTACGGGCCCCGCCAGCCGCAGGAGGTGCTGGCGCGCGTGTCGTCGGAAAACCTGCGCCAGGACGAGCTGGCCGGGCCGCCCATCGTCGACGTGGTGCTGGAGGCGGGCGATCTGCTGTACTTTCCGCGCGGCTGCATCCACCAGGCGGCCACCGTGCCGGGCGGCCACTC]




>consensus_3841#2
GACCCACGCGTCCGCCCACGCGTCCGGCACTGGGAACGGAAGCCGCTGCTGGTGCAGCGC
AGCGACCGCGCGTACTATGCCGGCCTGCTGTCCCGCGGATGATCGACGAGATGCTGCGCA
CGAACAACATCGAGTACACGAAAAACATCGACATCACGTCGTACCGGGACGGGCAGCGCG
AGACGCACAATCCGGACGGGCGCGTGCTACCGCCCGACCTGTGGCACTTCTACGACGCCG
GCTGCAGCGTGCGCATGCTCAACCCGCAAACCTACCTGCGCTCCGTGTACGAGCTGAACG
TGAAGCTGCAGGAGTACTTCCACTGCATGACGGGGGCGAACTTCTACCTGACGCCGCCGG
GCAGCCAGGGCTTCGCGCCGCACTACGACGACATCGAGGCGTTTGTGCTGCAGATCGAGG
GCCGCAAGCGCTGGCGCCTGTACGGGCCCCGCCAGCCGCAGGAGGTGCTGGCGCGCGTGT
CGTCGGAAAACCTGCGCCAGGACGAGCTGGCCGGGCCGCCCATCGTCGACGTGGTGCTGG
AGGCGGGCGATCTGCTGTACTTTCCGCGCGGCTGCATCCACCAGGCGGCCACCGTGCCGG
GCGGCCACTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3841#0      CCGCGGACGCGTGGGCTGCATCGAAGCAACCGACCGCTGCCACGACGGCTGGCATTGCGA 60
consensus_3841#2      -----GACCCACGCG-TCCGCCCACGCGTCCGGCACTGGGAACGGAAGCCGCTGCTG--- 51
consensus_3841#1      --CCGGGCGCGTGTTGTGGAACACAGCTTCACACCCCT----CGTCGCTCCGTGTTGCGC 54
                           * * *  *   *    *   **  *   *        **           **   

consensus_3841#0      AAAAAGAAAGCCAAGCAGCAGCAGGCGGTGCCGGGCGTGGTTCCAGAACAGCAGCACAAG 120
consensus_3841#2      -------GTGCAGCGCAGCGACCGCGCGTACTATGCCGGCCTGCTGTCCCGCGG-ATGAT 103
consensus_3841#1      GA----AAAACAGAAGCGCGTGCGATTATTCCCTTCCGTAAAGCAAAAC-GCAACGCTTG 109
                                *      **    *    * *    *       *    * **        

consensus_3841#0      CAGCAAAATG----GCGCCACCGGCGCCGAACCGAAGAAGAAAGCGTCGAAAAAAGGGCG 176
consensus_3841#2      CGACGAGATGCTGCGCACGAACAACATCGAGTACACGA--AAAACATCGACATCACGTCG 161
consensus_3841#1      CCACCCAGTTCCGCACGATGGAAACAGCCACCGCCACCCCAGGCCCTCCCGAGCTGGTCC 169
                      *  *    *      *        *  * *          *   * **   *    * * 

consensus_3841#0      CACCGCCAAGGTGAACGGCGGTGCGGTTGGTTTGCCGCCGACGAGTGTCGTTAC-GCCGC 235
consensus_3841#2      TACCGGGACGGGCAGCG-CGAGACGCACAATCCGG-ACGGGCGCGTGCTACCGC-CCGAC 218
consensus_3841#1      TCCCGA-AGGATGAACC-CGGCGCCGGGAATGGTGTGACGCCGGGTGGCGCTACCATCAC 227
                        ***  * *   * *  **   *      *        * ** ***      *     *

consensus_3841#0      -TGAAGCGCGCCTCCCAGATCAAGCAGGAACCAAAGACACCGAGCAGGGCGGCCCATTCA 294
consensus_3841#2      CTGTGGCACTTCTACGACGCCGGCTGCAGCGTGCGCATGCTCAACCCGCAAACCTACCTG 278
consensus_3841#1      CACCAGCACACCGCTAACCGGAAGCAACAA--AAAGCCACCGCAGAAAAGGAAAAAACCG 285
                           ** *  *    *                      *               *    

consensus_3841#0      CCCATCGTCGGCGGCACCTCCTCCTCCACCACCACTGCCAGCCCGGCCGGCACGGCCCTG 354
consensus_3841#2      CGCTCCGTGTACG--AGCTGAACGTGAAGCTGCAGGAGTACTTCCACTG-CATGACGGGG 335
consensus_3841#1      -GCAGCCTCTCCGCAACC--CTCCCCGAGCACAAAGCCAAAGCAGGACAGTGAGCCTGCT 342
                        *  * *   **  * *    *    * *   *     *             * *    

consensus_3841#0      CACGAGCTGGACAGTGTGACGATTGGGCGCCAGACGTTCGCGTGGCTCATCGGCCCCACC 414
consensus_3841#2      GCGAACTTCTACCTGACGCCGCCGGGCAGCCAGGGCTTCGCGCCGCACTACGACGACATC 395
consensus_3841#1      GCCGCTGACGGTAGCACCACCAACGGTGAACAGGTGCGGCCAGTGCCGGAAGGATCGTCC 402
                                         *    **    ***       *   **     *       *

consensus_3841#0      ATATCGGTGGACGAGTTTATGCGCACGCACTGGGAGCGGAAGC-CGCTGCTGGTGCAGCG 473
consensus_3841#2      ---------GAGGCGTTTGTGC-TGCAGATCGAGGGCCGCAAG-CGCTGGCGCC----TG 440
consensus_3841#1      CAAGCGGAACCTGCATCCGTGGTGAAAAAGCAGAAGAAAAAGCACACTGAAGAGGGAAAG 462
                                  *  *   **       *      *    *   * ***  *       *

consensus_3841#0      CAA-CGACCGCGCGTACTATGCCGGCCTGCTGTCCCGCGCCATGATCGACGAGATGCTGC 532
consensus_3841#2      TAC-GGGCCCCGCCAGCCGCAGGAGG-TGCTGGCGCGCGT-GTCGTCG--GAAAACCTGC 495
consensus_3841#1      CAAACGACGACGTCGACGTCGACGAC--GCCA--CCGGGAAAGAAGCAAAAAGGGGCCAC 518
                       *   * *  **    *           **     ** *       *    *    *  *

consensus_3841#0      GCACGAACAACATCGAGTACACGAAAAACATCGACATCACGTCGTTACCGGGACGGGCAG 592
consensus_3841#2      GCCAGGACGAGCTGGCCGGGCCGCCCATCGTCGACGTGGTGCTG-----GAGGCGGGCGA 550
consensus_3841#1      CGGCAAACATGTGCGCTTTCACATTAAGC-TGTATTCCGCATCG----------AAGCAA 567
                            **      *      *    * * *  *         *            **  

consensus_3841#0      CGCGAGACGCACAATCCGGGACGGGCGCGTGCTCCCGCCCGACCTGTGGCATTTCTACGA 652
consensus_3841#2      TCTGC--TGTACTTTCCGCG-CGGCTGCATCCACCAGGCGGCCACCGTGCCGGGCGGCCA 607
consensus_3841#1      C-CGA---CCGCTG-CCACGACGGCTG-GCATTGCGAAGAAAAAGAAAGCTAAGCAGCAG 621
                         *       *   **  * ***  *       *             **    *  *  

consensus_3841#0      CGCCGGCTGCAGCGTGCGCATGCTCAACCCGCAAACCTACCTGCGCTCCGTGTACG 708
consensus_3841#2      CTC----------------------------------------------------- 610
consensus_3841#1      CAGGCGGTGCCGGGCGTGGGTTCCAGAACAGCAG---------------------- 655
                      *