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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3856#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1019 fasta sequence
[GGCAGAATCCCCGAGGTTTACATTGTTTACAAAACCGTATCAGAGCGTTTCGGCGTACAATTGTATATTCCACACTGGCCAACAGGTTTATGAACATCATGAGAAGAGTAACAAATCCGGCCGGCGAAAGGAACAAGGATCCCATTCTGGATGTTTTGAGGCGAGTATTGTCGAAAACGGAGCCAAACCTTCGCCTGTTGGAAATTTCTTCCGGAGTTGGGCTGCACGCAGCTTACTTTGCCAAGGAATTTCCCAAATAACATTTCAACATCGGAATACGATACCACTCTGTATCGGCAGCATTGATGCCTACCGGCAAGATGTAACAGAACGTTGAACCTCCCATCTTCATCGACATTTCCAAACCGTGCACGGATTGGCAGAATGAGGCGAACATCAACATACTTCCGGTGCCAACCGGTTCGATTATATGCTCAATATAAACATGCTGCACATTTCACCGATCGCCTGTGCCCACCGGATTGTTTGACAATGCAGCTCAGTCTGTTGAAACGCGGAGGACTGCTGATCACATACGGACCGTACGCCGTGGACGGCACTCTCACTCCGGCAGCAGTAACGTACGTTNCACTGCAACTCATTGCAGCATCGTAACCCCGAGTGGGGTATACGCGACACGAANAGAGCTGAGCACGTATGGCCGACATCGACACAGGTATTACGCTGCNNAGAGATGNTTGCACTACCTGCAAACAACACAACTGTCTGACTTGGCAACAACACGATGCCAACTACAANGGCCCNAAAAAACAAAGGNCGGTGCACCACCCCCCGCCAANACGGTGCAACCCAACAAAACCGGGCACNNNACGCCNCAAACTNATAACCACCAAGGGAAGACCNGCNAAACCCCACCANACAAAACACACCACACACANAACAACCAAACAAAANAAACACAAACNCANCACCAACAAAACANNAACAACCACCNACACAAGAANCACAAACCACGAGACAAAACCAACGCACAAACACCCGCNCCAAAAACNNCANAA]
[+] EMBL AL695023 [GGCAGAATCCCCGAGGTTTACATTGTTTACAAAACCGTATCAGAGCGTTTCGGCGTACAATTGTATATTCCACACTGGCCAACAGGTTTATGAACATCATGAGAAGAGTAACAAATCCGGCCGGCGAAAGGAACAAGGATCCCATTCTGGATGTTTTGAGGCGAGTATTGTCGAAAACGGAGCCAAACCTTCGCCTGTTGGAAATTTCTTCCGGAGTTGGGCTGCACGCAGCTTACTTTGCCAAGGAATTTCCCAAATAACATTTCAACATCGGAATACGATACCACTCTGTATCGGCAGCATTGATGCCTACCGGCAAGATGTAACAGAACGTTGAACCTCCCATCTTCATCGACATTTCCAAACCGTGCACGGATTGGCAGAATGAGGCGAACATCAACATACTTCCGGTGCCAACCGGTTCGATTATATGCTCAATATAAACATGCTGCACATTTCACCGATCGCCTGTGCCCACCGGATTGTTTGACAATGCAGCTCAGTCTGTTGAAACGCGGAGGACTGCTGATCACATACGGACCGTACGCCGTGGACGGCACTCTCACTCCGGCAGCAGTAACGTACGTTNCACTGCAACTCATTGCAGCATCGTAACCCCGAGTGGGGTATACGCGACACGAANAGAGCTGAGCACGTATGGCCGACATCGACACAGGTATTACGCTGCNNAGAGATGNTTGCACTACCTGCAAACAACACAACTGTCTGACTTGGCAACAACACGATGCCAACTACAANGGCCCNAAAAAACAAAGGNCGGTGCACCACCCCCCGCCAANACGGTGCAACCCAACAAAACCGGGCACNNNACGCCNCAAACTNATAACCACCAAGGGAAGACCNGCNAAACCCCACCANACAAAACACACCACACACANAACAACCAAACAAAANAAACACAAACNCANCACCAACAAAACANNAACAACCACCNACACAAGAANCACAAACCACGAGACAAAACCAACGCACAAACACCCGCNCCAAAAACNNCANAA]
consensusID : consensus_3856#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 917 fasta sequence
[CAAGAATCCCGCACGAGGACAATCCGGCCGGCGAAAGGAACAAGGATCCCATTCTGGATGTTTTGAGGCGAGTATTGACGAAAACGGAGCCAAACCTTCGCCTGCTGGAAATTTCTTCCGGAGTTGGGCTGCACGCAGCTTACTTTGCCAAGGAATTCCCCAACATAACATTCCAACCATCGGAATACGATACCACTCTGTTCGGCAGCATTGATGCCTACCGGCAAGATGTAAAGAACGTTGAACCTCCCATCTTCATCGACATTTCCAAACCGTGCACGGATTGGCAGAATGAGGCCAACATCAACCATACTTCCGGTGCCAACCGGTTCGATTATATGCTCAATATAAACATGCTGCACATTTCACCGATCGCCTGTGCCCACGGATTGTTTGACAATGCAGCTCAGTTGTTGAAACGCGGAGGACTGCTGATAACATACGGACCGTACGCCGTGGACGGCACTCTCACTCCGGAGAGTAACGTACGTTTCAATGAATCATTGCAGCATCGTAACCCCGAGTGGGGTATACGCGACACGAAAGAGCTGAGCACGTTGGCCGCATCGAAAGGTATTACGCTGCAAGAGATGATTGAACTACCTGCAAAACAACAAATGTGTCGATTTGGAAAAAAGGATACAAATCATGCCTAAAGAAGTGTGACTTTCCCCGCTAAANTGTTTCCAACCAAACACTGGGCAGAANCGGAAAATTAGAANGTTTATTGGTACCTTGAAAACCCCAANAAAACANCACACGCCATCAAACACAGGGCATCTGGTTGCGGGGCCCGAAAAGGCTTATTCCCCCTTTAGATGAACGGGTCACATTTACAGCCTTGGGGCCNCTGGCCGTCCGTTTCACGAACAGGCATACACTGGGNAAAACCCGGGTTACCAAGTTAANCCGCCTTG]
[+] EMBL BX467423 [CAAGAATCCCGCACGAGGACAATCCGGCCGGCGAAAGGAACAAGGATCCCATTCTGGATGTTTTGAGGCGAGTATTGACGAAAACGGAGCCAAACCTTCGCCTGCTGGAAATTTCTTCCGGAGTTGGGCTGCACGCAGCTTACTTTGCCAAGGAATTCCCCAACATAACATTCCAACCATCGGAATACGATACCACTCTGTTCGGCAGCATTGATGCCTACCGGCAAGATGTAAAGAACGTTGAACCTCCCATCTTCATCGACATTTCCAAACCGTGCACGGATTGGCAGAATGAGGCCAACATCAACCATACTTCCGGTGCCAACCGGTTCGATTATATGCTCAATATAAACATGCTGCACATTTCACCGATCGCCTGTGCCCACGGATTGTTTGACAATGCAGCTCAGTTGTTGAAACGCGGAGGACTGCTGATAACATACGGACCGTACGCCGTGGACGGCACTCTCACTCCGGAGAGTAACGTACGTTTCAATGAATCATTGCAGCATCGTAACCCCGAGTGGGGTATACGCGACACGAAAGAGCTGAGCACGTTGGCCGCATCGAAAGGTATTACGCTGCAAGAGATGATTGAACTACCTGCAAAACAACAAATGTGTCGATTTGGAAAAAAGGATACAAATCATGCCTAAAGAAGTGTGACTTTCCCCGCTAAANTGTTTCCAACCAAACACTGGGCAGAANCGGAAAATTAGAANGTTTATTGGTACCTTGAAAACCCCAANAAAACANCACACGCCATCAAACACAGGGCATCTGGTTGCGGGGCCCGAAAAGGCTTATTCCCCCTTTAGATGAACGGGTCACATTTACAGCCTTGGGGCCNCTGGCCGTCCGTTTCACGAACAGGCATACACTGGGNAAAACCCGGGTTACCAAGTTAANCCGCCTTG]
consensusID : consensus_3856#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 637 fasta sequence
[AGATCGCCCGAGGTTCTGAACCACTGCTAAACGAAATAATTATATCGCTTGTAATTTAAATTCTACATTCCAGCATCATGAGAAGAATAACAAATCCGGCCGGCGAAAGGAACAAGGATCCCATTCTGGATGTTTTGAAGCGAGCATTGTCGAAAACGGAGCCAAACCTTCGCCTGCTGGAAATTTCTTCAGGAGTTGGGCTGCACGCAGCTTACTTTGCCAAGGAATTCCCCAACATAACATTCCAACCATCGGAATACGATACCACTCTGTTCGGCAGCATTGATGCCTACCGGCAAGATGTAAAGAACGTTGAACCTCCCATCTTCATCGACATTTCCAAACCGTGCACGGATTGGCAGAATGAGGCGAACATCAACCATACTTCCGGTGCCAACCGGTTCGATTATATGCTCAATATAAACATGCTGCACATTTCACCGATCGCCTGTGCCCACGGATTGTCTGACAATGCAGCTCAGCTGTTGAAACGCGGAGGACTGCTGATAACATACGGACCGTACGCCGTGGACGGCACTCTCGCTCCGGAGAGTAACGTACGTCAATGAATCATNGCAGCATCGTAACNCCCGAACNGGGGNCATACGCGACACGAACAGAGCCGAGCACGTTGGNC]
[+] EMBL AL931693 [AGATCGCCCGAGGTTCTGAACCACTGCTAAACGAAATAATTATATCGCTTGTAATTTAAATTCTACATTCCAGCATCATGAGAAGAATAACAAATCCGGCCGGCGAAAGGAACAAGGATCCCATTCTGGATGTTTTGAAGCGAGCATTGTCGAAAACGGAGCCAAACCTTCGCCTGCTGGAAATTTCTTCAGGAGTTGGGCTGCACGCAGCTTACTTTGCCAAGGAATTCCCCAACATAACATTCCAACCATCGGAATACGATACCACTCTGTTCGGCAGCATTGATGCCTACCGGCAAGATGTAAAGAACGTTGAACCTCCCATCTTCATCGACATTTCCAAACCGTGCACGGATTGGCAGAATGAGGCGAACATCAACCATACTTCCGGTGCCAACCGGTTCGATTATATGCTCAATATAAACATGCTGCACATTTCACCGATCGCCTGTGCCCACGGATTGTCTGACAATGCAGCTCAGCTGTTGAAACGCGGAGGACTGCTGATAACATACGGACCGTACGCCGTGGACGGCACTCTCGCTCCGGAGAGTAACGTACGTCAATGAATCATNGCAGCATCGTAACNCCCGAACNGGGGNCATACGCGACACGAACAGAGCCGAGCACGTTGGNC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3856#0 GGCAGAATCCCCGAGGTTTACATTGTTTACAAAACCGTATCAGAGCGTTTCGGCGTACAA 60
consensus_3856#2 ---AGATCGCCCGAGGTTCTGAACCACTGCTAAACGAAATAATTATATC---GCTTGTAA 54
consensus_3856#1 ------------------------------------------------------------
consensus_3856#0 TTGTATATTCCACACTGGCCAACAGGTTTATGAACATCATGAGAAGAGTAACAAATCCGG 120
consensus_3856#2 TT-TAAATTCTACATT--------------CCAGCATCATGAGAAGAATAACAAATCCGG 99
consensus_3856#1 ----------------------------CAAGAATCCCGCACGAGGA-----CAATCCGG 27
* * ** ** *******
consensus_3856#0 CCGGCGAAAGGAACAAGGATCCCATTCTGGATGTTTTGAGGCGAGTATTGTCGAAAACGG 180
consensus_3856#2 CCGGCGAAAGGAACAAGGATCCCATTCTGGATGTTTTGAAGCGAGCATTGTCGAAAACGG 159
consensus_3856#1 CCGGCGAAAGGAACAAGGATCCCATTCTGGATGTTTTGAGGCGAGTATTGACGAAAACGG 87
*************************************** ***** **** *********
consensus_3856#0 AGCCAAACCTTCGCCTGTTGGAAATTTCTTCCGGAGTTGGGCTGCACGCAGCTTACTTTG 240
consensus_3856#2 AGCCAAACCTTCGCCTGCTGGAAATTTCTTCAGGAGTTGGGCTGCACGCAGCTTACTTTG 219
consensus_3856#1 AGCCAAACCTTCGCCTGCTGGAAATTTCTTCCGGAGTTGGGCTGCACGCAGCTTACTTTG 147
***************** ************* ****************************
consensus_3856#0 CCAAGGAATTTCCCAA-ATAACATTTCAAC-ATCGGAATACGATACCACTCTGTATCGGC 298
consensus_3856#2 CCAAGGAATTCCCCAACATAACATTCCAACCATCGGAATACGATACCACTCTGT-TCGGC 278
consensus_3856#1 CCAAGGAATTCCCCAACATAACATTCCAACCATCGGAATACGATACCACTCTGT-TCGGC 206
********** ***** ******** **** *********************** *****
consensus_3856#0 AGCATTGATGCCTACCGGCAAGATGTAACAGAACGTTGAACCTCCCATCTTCATCGACAT 358
consensus_3856#2 AGCATTGATGCCTACCGGCAAGATGTAA-AGAACGTTGAACCTCCCATCTTCATCGACAT 337
consensus_3856#1 AGCATTGATGCCTACCGGCAAGATGTAA-AGAACGTTGAACCTCCCATCTTCATCGACAT 265
**************************** *******************************
consensus_3856#0 TTCCAAACCGTGCACGGATTGGCAGAATGAGGCGAACATCAAC-ATACTTCCGGTGCCAA 417
consensus_3856#2 TTCCAAACCGTGCACGGATTGGCAGAATGAGGCGAACATCAACCATACTTCCGGTGCCAA 397
consensus_3856#1 TTCCAAACCGTGCACGGATTGGCAGAATGAGGCCAACATCAACCATACTTCCGGTGCCAA 325
********************************* ********* ****************
consensus_3856#0 CCGGTTCGATTATATGCTCAATATAAACATGCTGCACATTTCACCGATCGCCTGTGCCCA 477
consensus_3856#2 CCGGTTCGATTATATGCTCAATATAAACATGCTGCACATTTCACCGATCGCCTGTGCCCA 457
consensus_3856#1 CCGGTTCGATTATATGCTCAATATAAACATGCTGCACATTTCACCGATCGCCTGTGCCCA 385
************************************************************
consensus_3856#0 CCGGATTGTTTGACAATGCAGCTCAGTCTGTTGAAACGCGGAGGACTGCTGATCACATAC 537
consensus_3856#2 C-GGATTGTCTGACAATGCAGCTCAG-CTGTTGAAACGCGGAGGACTGCTGATAACATAC 515
consensus_3856#1 C-GGATTGTTTGACAATGCAGCTCAG-TTGTTGAAACGCGGAGGACTGCTGATAACATAC 443
* ******* **************** ************************* ******
consensus_3856#0 GGACCGTACGCCGTGGACGGCACTCTCACTCCGGCAGCAGTAACGTACGTTNCACTGCAA 597
consensus_3856#2 GGACCGTACGCCGTGGACGGCACTCTCGCTCCGGAG--AGTAACGTACGTCA----ATGA 569
consensus_3856#1 GGACCGTACGCCGTGGACGGCACTCTCACTCCGGAG--AGTAACGTACGTTTCA--ATGA 499
*************************** ****** ************ *
consensus_3856#0 CTCATTGCAGCATCGTAACCCCGA---GTGGGGTATACGCGACACGAANAGAGCTGAGCA 654
consensus_3856#2 ATCATNGCAGCATCGTAACNCCCGAACNGGGGNCATACGCGACACGAACAGAGCCGAGCA 629
consensus_3856#1 ATCATTGCAGCATCGTAACCCCGA---GTGGGGTATACGCGACACGAA-AGAGCTGAGCA 555
**** ************* ** *** ************** ***** *****
consensus_3856#0 CGTATGGCCGACATCGACACAGGTATTACGCTGCNNAGAGATGNTTGCACTACCTGCAAA 714
consensus_3856#2 CGT-TGGNC--------------------------------------------------- 637
consensus_3856#1 CGT-TGGCCG-CATCGAA--AGGTATTACGCTGCAA-GAGATGATTGAACTACCTGCAAA 610
*** *** *
consensus_3856#0 -CAACACAACTGTCTGACTTGGCAACAACACGATGCCAACTACAANGGCCCNAAAAAACA 773
consensus_3856#2 ------------------------------------------------------------
consensus_3856#1 ACAACAAATGTGTC-GATTTGGAAAAAAG--GATACAAATCATG-----CCTAAAGAA-- 660
consensus_3856#0 AAGGNCGGTGCACCACCCCCCGCCAANACGGTGCAACCCAA---CAAAACCGGGCACNNN 830
consensus_3856#2 ------------------------------------------------------------
consensus_3856#1 -------GTGTGACTTTCCCCGCTAAANTGTTTCCAACCAAACACTGGGCAGAANCGGAA 713
consensus_3856#0 ACGCCNCAAACTNATAACCACCAAGGGAAGACCNGCNAAACCCCACCANACAAAACACAC 890
consensus_3856#2 ------------------------------------------------------------
consensus_3856#1 AATTAGAANGTTTATTGGTACCTTGAAAACCCCAANAAAACANCACACGCCATCAAACAC 773
consensus_3856#0 CACACACANAACAACCAAACAAAANAAACACAAACNCANCACCAACAAAACANNAACAAC 950
consensus_3856#2 ------------------------------------------------------------
consensus_3856#1 AGGGCATCTGGTTGCGGGGCCCGAAAAGGCTTATTCCCCCTTTAGATGAACGGGTCACAT 833
consensus_3856#0 CACCNACACAAGAANCACAAACCACGAGACAAAACCAACGCACAAACACCCGCNCCAAAA 1010
consensus_3856#2 ------------------------------------------------------------
consensus_3856#1 TTACAGCCTTGGGGCCNCTGGCCGTCCGTT-----TCACGAACAGGCATACACTGGGNAA 888
consensus_3856#0 ACNNCANAA-------------------- 1019
consensus_3856#2 -----------------------------
consensus_3856#1 AACCCGGGTTACCAAGTTAANCCGCCTTG 917
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||