These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3869#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 804 fasta sequence [CCCCGAGGTTAGCTAGTGACACTGCTCACATCATCATCATCATCAGTAGCGGCAGACGAGTCGATCGTAATGATGGAACATGGCAAACTGGTCGAAGGCATTTGCATCGACGAAACGGCCTTTACGCTGGACGATAGTGGTGAAATTCGGGAGAACGAGCTGCGGCTAACGGTGGAAGATGATAACGATGTTACGAAGGATCTCGATTTTAGCCGTACATCGCCCGCATTGTTTTCGATGACCTCA-CCAAGCGTGCCCGGATGATGCTGGAGATACAGCGGTCGATCGATCGGAACCGATCCG-CATGACCGGTCCGGTAAGCAGCTCAACGCCATTTTTTATGCCGGCGGTGGAAGGTTCGGGATTCGGGAGCTCGCTGAAGACGACAACGCACGTCGGAGGTTTCGCCGGCCGCTTTGCGGTGCAGTGTGGATGAAACTCCTGTGCCGCAGAATCAACAGCAACTGTGTCAGCAGGAGGCAGGACAGCGAACGCCGTGGAGTGCCCGCTTGGCGGGAAGCCAGTCGAAGCAGGAGGGTGCCTTGAAGCGCCAATCGATTGCCGGTGCGATAGACGATCTGAACGAGATGACGGAGGAGCTAATCGATTTTATCAAGGACTTCGAGGAGAAATACTCCAATGCAATCCATTAATGGTGTTCCTTATGGTTCGATAGAACTTGAAACAGAGTTTTTTCAATCATTTTAGGTTTATAAAACAGATGAATAACGCTGAAACTTGAGGCGGAGCTGAAAATGTTTCGGANCGGATTTTCTAAATAAACTACACCCGGTAGTTGAAGAG] [+] EMBL AL695190 [CCCCGAGGTTAGCTAGTGACACTGCTCACATCATCATCATCATCAGTAGCGGCAGACGAGTCGATCGTAATGATGGAACATGGCAAACTGGTCGAAGGCATTTGCATCGACGAAACGGCCTTTACGCTGGACGATAGTGGTGAAATTCGGGAGAACGAGCTGCGGCTAACGGTGGAAGATGATAACGATGTTACGAAGGATCTCGATTTTAGCCGTACATCGCCCGCATTGTTTTCGATGACCTCA CCAAGCGTGCCCGGATGATGCTGGAGATACAGCGGTCGATCGATCGGAACCGATCCG CATGACCGGTCCGGTAAGCAGCTCAACGCCATTTTTTATGCCGGCGGTGGAAGGTTCGGGATTCGGGAGCTCGCTGAAGACGACAACGCACGTCGGAGGTTTCGCCGGCCGCTTTGCGGTGCAGTGTGGATGAAACTCCTGTGCCGCAGAATCAACAGCAACTGTGTCAGCAGGAGGCAGGACAGCGA ] [+] EMBL BX623296 [ ACTGGTCGAAGGCATTTGCATCGACGAAACGGCCTTTACGCTGGACGATAGCGGTGAAATTCGGGAGAACGAGCTGCGGCTAACGGTGGAAGATGATAACGATGTTACGAAGGATCTAGATTTTAGCCGTACATCGCCCTCCCTGTTTTCGATGACCTCACCCAAGCGAGCCCGGATGATGCTGGAGATACAGCGGTCGATCGATCGGAACCGATCCGCCATGACCGGTCCGGTTAGCAGCTCAACGCCATTTTTGATGCCAGCGGTGGAACGCTCGGGATTCGGGAGCTCGCTGAAGATGACAACGCA GTCGGAGGTTTCGCCGGCCGCTTTGCGGTGCAGTGTGGATGAAACACCTGTGCCACAGAATCAACAGCAACTGGGTCAGCAGG GG GGACAGCAAACGCCGTGGAGTGCCCGCTTGGCGGGAAGCCAGTCGAAGCAGGAGGGTGCCTTGAAGCGCCAATCGATTGCCGGTGCGATAGACGATCTGAACGAGATGACGGAGGAGCTAATCGATTTTATCAAGGACTTCGAGGAGAAATACTCCAATGCAATCCATTAATGGTGTTCCTTATGGTTCGATAGAACTTGAAACAGAGTTTTTTCAATCATTTTAGGTTTATAAAACAGATGAATAACGCTGAAACTTGAGGCGGAGCTGAAAATGTTTCGGANCGGATTTTCTAAATAAACTACACCCGGTAGTTGAAGAG] consensusID : consensus_3869#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 389 fasta sequence [TCGGGATTCGGGAGCTCGCTGAAGACGACAACGCAGTCGGAGGTTTCGCCGGCCGCTTTGCGGTGCAGTGTGGATGAAACTCCTGTGCCGCAGAATCAACAGCAACTGTGTCAGCAGGAGGCAGGACAGCGAACGCCGCGGAGTGGCCGCCCGGCGGGAAGCCAGTCGAAGCAGGCGGGTGCATTGAAGCGCCAATCGATTGCCGGTGCGATAGACGATCTGAACGAGATGACGGAGGAGCTAATTGATTTTATCAAAGGCTTCGAGGAAAAGTACTCCACTGCAATCCATTAATGATGTTCCTTATGGTTCGATAGAACTTGAAACAGAGGTTTATAAAACTGATGAATAACGTTGAAACTTGAGGTGGAGCTGAAAATGTTTCGGAT] [-] EMBL CNS09MZJ [TCGGGATTCGGGAGCTCGCTGAAGACGACAACGCAGTCGGAGGTTTCGCCGGCCGCTTTGCGGTGCAGTGTGGATGAAACTCCTGTGCCGCAGAATCAACAGCAACTGTGTCAGCAGGAGGCAGGACAGCGAACGCCGCGGAGTGGCCGCCCGGCGGGAAGCCAGTCGAAGCAGGCGGGTGCATTGAAGCGCCAATCGATTGCCGGTGCGATAGACGATCTGAACGAGATGACGGAGGAGCTAATTGATTTTATCAAAGGCTTCGAGGAAAAGTACTCCACTGCAATCCATTAATGATGTTCCTTATGGTTCGATAGAACTTGAAACAGAGGTTTATAAAACTGATGAATAACGTTGAAACTTGAGGTGGAGCTGAAAATGTTTCGGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3869#0 CCCCGAGGTTAGCTAGTGACACTGCTCACATCATCATCATCATCAGTAGCGGCAGACGAG 60 consensus_3869#1 ------------------------------------------------------------ consensus_3869#0 TCGATCGTAATGATGGAACATGGCAAACTGGTCGAAGGCATTTGCATCGACGAAACGGCC 120 consensus_3869#1 ------------------------------------------------------------ consensus_3869#0 TTTACGCTGGACGATAGTGGTGAAATTCGGGAGAACGAGCTGCGGCTAACGGTGGAAGAT 180 consensus_3869#1 ------------------------------------------------------------ consensus_3869#0 GATAACGATGTTACGAAGGATCTCGATTTTAGCCGTACATCGCCCGCATTGTTTTCGATG 240 consensus_3869#1 ------------------------------------------------------------ consensus_3869#0 ACCTCACCAAGCGTGCCCGGATGATGCTGGAGATACAGCGGTCGATCGATCGGAACCGAT 300 consensus_3869#1 ------------------------------------------------------------ consensus_3869#0 CCGCATGACCGGTCCGGTAAGCAGCTCAACGCCATTTTTTATGCCGGCGGTGGAAGGTTC 360 consensus_3869#1 ----------------------------------------------------------TC 2 ** consensus_3869#0 GGGATTCGGGAGCTCGCTGAAGACGACAACGCACGTCGGAGGTTTCGCCGGCCGCTTTGC 420 consensus_3869#1 GGGATTCGGGAGCTCGCTGAAGACGACAACGCA-GTCGGAGGTTTCGCCGGCCGCTTTGC 61 ********************************* ************************** consensus_3869#0 GGTGCAGTGTGGATGAAACTCCTGTGCCGCAGAATCAACAGCAACTGTGTCAGCAGGAGG 480 consensus_3869#1 GGTGCAGTGTGGATGAAACTCCTGTGCCGCAGAATCAACAGCAACTGTGTCAGCAGGAGG 121 ************************************************************ consensus_3869#0 CAGGACAGCGAACGCCGTGGAGTGCCCGCTTGGCGGGAAGCCAGTCGAAGCAGGAGGGTG 540 consensus_3869#1 CAGGACAGCGAACGCCGCGGAGTGGCCGCCCGGCGGGAAGCCAGTCGAAGCAGGCGGGTG 181 ***************** ****** **** *********************** ***** consensus_3869#0 CCTTGAAGCGCCAATCGATTGCCGGTGCGATAGACGATCTGAACGAGATGACGGAGGAGC 600 consensus_3869#1 CATTGAAGCGCCAATCGATTGCCGGTGCGATAGACGATCTGAACGAGATGACGGAGGAGC 241 * ********************************************************** consensus_3869#0 TAATCGATTTTATCAAGGACTTCGAGGAGAAATACTCCAATGCAATCCATTAATGGTGTT 660 consensus_3869#1 TAATTGATTTTATCAAAGGCTTCGAGGAAAAGTACTCCACTGCAATCCATTAATGATGTT 301 **** *********** * ********* ** ******* *************** **** consensus_3869#0 CCTTATGGTTCGATAGAACTTGAAACAGAGTTTTTTCAATCATTTTAGGTTTATAAAACA 720 consensus_3869#1 CCTTATGGTTCGATAGAACTTGAAACAGAG------------------GTTTATAAAACT 343 ****************************** *********** consensus_3869#0 GATGAATAACGCTGAAACTTGAGGCGGAGCTGAAAATGTTTCGGANCGGATTTTCTAAAT 780 consensus_3869#1 GATGAATAACGTTGAAACTTGAGGTGGAGCTGAAAATGTTTCGGAT-------------- 389 *********** ************ ******************** consensus_3869#0 AAACTACACCCGGTAGTTGAAGAG 804 consensus_3869#1 ------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||