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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_387#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 785 fasta sequence
[GAACGTGGAGTACTTCCCGTACGATGAGCAGACGTGCCTGATGAAGTTTGGCTCGTGGACGTATAACGGGGCACAGGTGGAGCTGCGCCATCTCGATCAGATTCCTGGCAGCAATCTCGTGCAGATTGGGATTGATTTGAGTGAATTTTACCTGTCGGTTGAATGGGACATCCTAGAAGTGCCGGCCAGCCGCAACGAGGAGTATTATCCTTGCTGCCCTGAACCGTTCTCCGACATTACGTTCAAGCTTACGATGAGAAGAAAAACACTGTTCTACACGGTCAATCTGATCATTCCGTGCGTTGGCATCACATTCCTCACCGTGCTGGTGTTCTATCTGCCGAGCGATTCGGGTGAAAAGGTCACGCTTTGCATCTCGATACTGGTGTCATTGACTGTGTTCTTTTTGCTGCTGGCCGAAATCATCCCGCCGACATCGCTGGCCGTACCGCTGCTCGGCAAGTATCTGCTCTTCACGATGATCCTTGTATCGCTCTCCGTCTGGACGACCGTTTGCGTGCTGAACGTTTGGTACAGGAGCACATCGACCCATAAAATGTCACCCTTCGTCCGGCGGCTGTTCCTGGAGATAATGCCCAAAATTCTGATGATGCGCCGGGCAAAGTACACGCTGCCGGATTACGACGATTCGACACCGAGCAATGGCTACACGAACGAAATCGAAATGAGCGTTAGCGACTTTCCCGGCGAGTTTAAGGAGGGCGGCGACAGTTTCGATAATATAGGAGTTAATCTTTCTCACGGTTCAGTCGAGGCGGAAAATG]
[+] EMBL BX618235 [GAACGTGGAGTACTTCCCGTACGATGAGCAGACGTGCCTGATGAAGTTTGGCTCGTGGACGTATAACGGGGCACAGGTGGAGCTGCGCCATCTCGATCAGATTCCTGGCAGCAATCTCGTGCAGATTGGGATTGATTTGAGTGAATTTTACCTGTCGGTTGAATGGGACATCCTAGAAGTGCCGGCCAGCCGCAACGAGGAGTATTATCCTTGCTGCCCTGAACCGTTCTCCGACATTACGTTCAAGCTTACGATGAGAAGAAAAACACTGTTCTACACGGTCAATCTGATCATTCCGTGCGTTGGCATCACATTCCTCACCGTGCTGGTGTTCTATCTGCCGAGCGATTCGGGTGAAAAGGTCACGCTTTGCATCTCGATACTGGTGTCATTGACTGTGTTCTTTTTGCTGCTGGCCGAAATCATCCCGCCGACATCGCTGGCCGTACCGCTGCTCGGCAAGTATCTGCTCTTCACGATGATCCTTGTATCGCTCTCCGTCTGGACGACCGTTTGCGTGCTGAACGTTTGGTACAGGAGCACATCGACCCATAAAATGTCACCCTTCGTCCGGCGGCTGTTCCTGGAGATAATGCCCAAAATTCTGATGATGCGCCGGGCAAAGTACACGCTGCCGGATTACGACGATTCGACACCGAGCAATGGCTACACGAACGAAATCGAAATGAGCGTTAGCGACTTTCCCGGCGAGTTTAAGGAGGGCGGCGACAGTTTCGATAATATAGGAGTTAATCTTTCTCACGGTTCAGTCGAGGCGGAAAATG]
consensusID : consensus_387#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 648 fasta sequence
[CCGCAGAACCGTTCTCCGACATTACGTTCAAGCTTACGATGAGAAGAAAAACACTGTTCTACACGGTCAATCTGATCATTCCGTGCGTTGGCATCACATTCCTCACCGTGCTGGTGTTCTATCTGCCGAGCGATTCGGGTGAAAAGGTCACGCTTTGCATCTCGATACTGGTGTCATTGACTGTGTTCTTTTTGCTGCTGGCCGAAATCATCCCGCCGACATCGCTGGCCGTACCGCTGCTCGGCAAGTATCTGCTCTTCACGATGATCCTTGTATCGCTCTCCGTCTGGACGACCGTTTGCGTGCTGAACGTTTGGTACAGGAGCACATCGACCCATAAAATGTCACCCTTCGTCCGGCGGCTGTTCCTGGAGATAATGCCCAAAATTCTGATGATGCGCCGGGCAAAGTACACGCTGCCGGATTACGACGATTCGACACCGAGCAATGGCTACACGAACGAAATCGAAATGAGCGTTAGCGACTTTCCCGGCGAGTTTAAGGAGGGCGGCGACAGTTTCGATAATATAGGAGTTAATCTTTCTCACGGTACAGGTAAGTCGCAGGTGCTTAGGGATGCGCCCTCCCCACCGTTAATGGAATACCAATTGATACGGCTTCATGCTAGGAGGGGGGAGCGATACGACC]
[+] EMBL BM624946 [CCGCAGAACCGTTCTCCGACATTACGTTCAAGCTTACGATGAGAAGAAAAACACTGTTCTACACGGTCAATCTGATCATTCCGTGCGTTGGCATCACATTCCTCACCGTGCTGGTGTTCTATCTGCCGAGCGATTCGGGTGAAAAGGTCACGCTTTGCATCTCGATACTGGTGTCATTGACTGTGTTCTTTTTGCTGCTGGCCGAAATCATCCCGCCGACATCGCTGGCCGTACCGCTGCTCGGCAAGTATCTGCTCTTCACGATGATCCTTGTATCGCTCTCCGTCTGGACGACCGTTTGCGTGCTGAACGTTTGGTACAGGAGCACATCGACCCATAAAATGTCACCCTTCGTCCGGCGGCTGTTCCTGGAGATAATGCCCAAAATTCTGATGATGCGCCGGGCAAAGTACACGCTGCCGGATTACGACGATTCGACACCGAGCAATGGCTACACGAACGAAATCGAAATGAGCGTTAGCGACTTTCCCGGCGAGTTTAAGGAGGGCGGCGACAGTTTCGATAATATAGGAGTTAATCTTTCTCACGGTACAGGTAAGTCGCAGGTGCTTAGGGATGCGCCCTCCCCACCGTTAATGGAATACCAATTGATACGGCTTCATGCTAGGAGGGGGGAGCGATACGACC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_387#0 GAACGTGGAGTACTTCCCGTACGATGAGCAGACGTGCCTGATGAAGTTTGGCTCGTGGAC 60
consensus_387#1 ------------------------------------------------------------
consensus_387#0 GTATAACGGGGCACAGGTGGAGCTGCGCCATCTCGATCAGATTCCTGGCAGCAATCTCGT 120
consensus_387#1 ------------------------------------------------------------
consensus_387#0 GCAGATTGGGATTGATTTGAGTGAATTTTACCTGTCGGTTGAATGGGACATCCTAGAAGT 180
consensus_387#1 ------------------------------------------------------------
consensus_387#0 GCCGGCCAGCCGCAACGAGGAGTATTATCCTTGCTGCCCTGAACCGTTCTCCGACATTAC 240
consensus_387#1 -----------------------------------CCGCAGAACCGTTCTCCGACATTAC 25
* * ********************
consensus_387#0 GTTCAAGCTTACGATGAGAAGAAAAACACTGTTCTACACGGTCAATCTGATCATTCCGTG 300
consensus_387#1 GTTCAAGCTTACGATGAGAAGAAAAACACTGTTCTACACGGTCAATCTGATCATTCCGTG 85
************************************************************
consensus_387#0 CGTTGGCATCACATTCCTCACCGTGCTGGTGTTCTATCTGCCGAGCGATTCGGGTGAAAA 360
consensus_387#1 CGTTGGCATCACATTCCTCACCGTGCTGGTGTTCTATCTGCCGAGCGATTCGGGTGAAAA 145
************************************************************
consensus_387#0 GGTCACGCTTTGCATCTCGATACTGGTGTCATTGACTGTGTTCTTTTTGCTGCTGGCCGA 420
consensus_387#1 GGTCACGCTTTGCATCTCGATACTGGTGTCATTGACTGTGTTCTTTTTGCTGCTGGCCGA 205
************************************************************
consensus_387#0 AATCATCCCGCCGACATCGCTGGCCGTACCGCTGCTCGGCAAGTATCTGCTCTTCACGAT 480
consensus_387#1 AATCATCCCGCCGACATCGCTGGCCGTACCGCTGCTCGGCAAGTATCTGCTCTTCACGAT 265
************************************************************
consensus_387#0 GATCCTTGTATCGCTCTCCGTCTGGACGACCGTTTGCGTGCTGAACGTTTGGTACAGGAG 540
consensus_387#1 GATCCTTGTATCGCTCTCCGTCTGGACGACCGTTTGCGTGCTGAACGTTTGGTACAGGAG 325
************************************************************
consensus_387#0 CACATCGACCCATAAAATGTCACCCTTCGTCCGGCGGCTGTTCCTGGAGATAATGCCCAA 600
consensus_387#1 CACATCGACCCATAAAATGTCACCCTTCGTCCGGCGGCTGTTCCTGGAGATAATGCCCAA 385
************************************************************
consensus_387#0 AATTCTGATGATGCGCCGGGCAAAGTACACGCTGCCGGATTACGACGATTCGACACCGAG 660
consensus_387#1 AATTCTGATGATGCGCCGGGCAAAGTACACGCTGCCGGATTACGACGATTCGACACCGAG 445
************************************************************
consensus_387#0 CAATGGCTACACGAACGAAATCGAAATGAGCGTTAGCGACTTTCCCGGCGAGTTTAAGGA 720
consensus_387#1 CAATGGCTACACGAACGAAATCGAAATGAGCGTTAGCGACTTTCCCGGCGAGTTTAAGGA 505
************************************************************
consensus_387#0 GGGCGGCGACAGTTTCGATAATATAGGAGTTAATCTTTCTCACGGTTCAGTCGAGGCGGA 780
consensus_387#1 GGGCGGCGACAGTTTCGATAATATAGGAGTTAATCTTTCTCACGGTACAGGTAAGTCGCA 565
********************************************** *** ** ** *
consensus_387#0 AAATG------------------------------------------------------- 785
consensus_387#1 GG-TGCTTAGGGATGCGCCCTCCCCACCGTTAATGGAATACCAATTGATACGGCTTCATG 624
**
consensus_387#0 ------------------------
consensus_387#1 CTAGGAGGGGGGAGCGATACGACC 648
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||