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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3875#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1187 fasta sequence
[GTTCGGCTGTGCCGGCGGTACGCAGCACGTGCCGCTGATCGACGGATCGCTTGCTGGGGCGGGGCGGCTGGCCGCCACACAGCACGGCGGGAACTAGCGAACCCGCCTCACCCGTTCGCGCCCGTACAGCGGGGAAAGGTGGAGGCGGGTTGTTTTGCTGGCGGAGGCGCTGCCTCCTGTTCGCAGAGCTTTTTGTGCGTGGCACAGTACGGATCAGTACAGCAGAAGTAATGCCTTCGGTCGTGCACGTAGCACAGGTTCAGCTCCGGATTTTGCATCAGCTTCCGCTCGGTAGTCGTCTGCAGTGTTGGGCACTGCACACGCAGCAAGCAAGCACCCGGTTTCCCATTCAGCCGGCAGCCGATGTGGCGCTTGCGGCAGCAAATGTGGGTTTTCGTGTCCTGCTGTACAACCGGCTGACAGGTTTTGCGATGTATCTCCTTCATGAACGTGGCGTTTGTCAAATGTTCGTTCTTTTCGATACGCCTGTACACTGGCGAACAGTGGCGGATCGGAAGGCAGCGTTCGTCCGGATCGCTACAACCAATTTGCAAAGCTTCCCCTGCAAACGTTCCAAACACCAATGTCGCGACGATCACCGAGAATACGTTTGCGGAAATCATTCTGTTTCCGTTAGCACTGAACCACACCGTAGCACTCGTCAAGTCCGACTGAACTGAACTTCACGGCAGGGCTGAATGAATGGCAAACTCGCGCTAACGAGCGAACGAGAGTCGAATGGGGATTTTTCTTGTGCGAAGTGTGAGTTCACACGCACAATCGAGCGGGGAATCGGGGTGGGAGACACGAATGAGTGAGAATGTTGCTACTTGTTAGCATATTATTATCTTGAAGAAGGAGGCCCGTCCGATCAGCGGCAAGGCTTGCGAAGGTGGTTGTCACTGGAGAGGAGAGGAGGCGTACATTTCTTTACCCATCTGTGGGTCAGACCGGCCGGTGCTGGGTGGGTTCGTTTCTTCCAGCATATTGGGGATTTCTACTCGCGACAAATCGTGGCAAAAAGAAAAGGATTGCCCTCACGAATGACAACCAATGGCGCAATGGGAATGAATCAGATAATAATTAACAAGAAACGAATGGTTCTCCTCCGTTATGGTGATTCCTTGCAAGAGCATCATCATATGTTTGAGGTGATTTTCTGAATGACCCAGGAAGACACATTTTCT]
[-] EMBL BM606677 [GTTCGGCTGTGCCGGCGGTACGCAGCACGTGCCGCTGATCGACGGATCGCTTGCTGGGGCGGGGCGGCTGGCCGCCACACAGCACGGCGGGAACTAGCGAACCCGCCTCACCCGTTCGCGCCCGTACAGCGGGGAAAGGTGGAGGCGGGTTGTTTTGCTGGCGGAGGCGCTGCCTCCTGTTCGCAGAGCTTTTTGTGCGTGGCACAGTACGGATCAGTACAGCAGAAGTAATGCCTTCGGTCGTGCACGTAGCACAGGTTCAGCTCCGGATTTTGCATCAGCTTCCGCTCGGTAGTCGTCTGCAGTGTTGGGCACTGCACACGCAGCAAGCAAGCACCCGGTTTCCCATTCAGCCGGCAGCCGATGTGGCGCTTGCGGCAGCAAATGTGGGTTTTCGTGTCCTGCTGTACAACCGGCTGACAGGTTTTGCGATGTATCTCCTTCATGAACGTGGCGTTTGTCAAATGTTCGTTCTTTTCGATACGCCTGTACACTGGCGAACAGTGGCGGATCGGAAGGCAGCGTTCGTCCGGATCGCTACAACCAATTTGCAAAGCTTCCCCTGCAAACGTTCCAAACACCAATGTCGCGACGATCACCGAGAATACGTTTGCGGAAATCATTCTGTTTCCGTTAGCACTGAACCACACCGTAGCACTCGTCAAGTCCGACTGAACTGAACTTCACGG ]
[+] EMBL BX627241 [ ACCAATGTCGCGACGATCACCGAGAATACGTTTGCGGAAATCATTCTGTTTCCGTTAGCACTGAACCACACCGTAGCACTCGTCAAGTCCGACTGAACTGAACTTCAAGTCAGGGCTGAATGAATGGCAAACTCGCGCTAACGAGCGAACGAGAGTCGAATGGGGATTTTTCTTGTGCGAAGTGTGAGTTCACACGCACAATCGAGCGGGGAATCGGGGTGGGAGACACGAATGAGTGAGAATGTTGCTACTTGTTAGCATATTATTATCTTGAAGAAGGAGGCCCGTCCGATCAGCGGCAAGGCTTGCGAAGGTGGTTGTCACTGGAGAGGAGAGGAGGCGTACATTTCTTTACCCATCTGTGGGTCAGACCGGCCGGTGCTGGGTGGGTTCGTTTCTTCCAGCATATTGGGGATTTCTACTCGCGACAAATCGTGGCAAAAAGAAAAGGATTGCCCTCACGAATGACAACCAATGGCGCAATGGGAATGAATCAGATAATAATTAACAAGAAACGAATGGTTCTCCTCCGTTATGGTGATTCCTTGCAAGAGCATCATCATATGTTTGAGGTGATTTTCTGAATGACCCAGGAAGACACATTTTCT]
consensusID : consensus_3875#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 710 fasta sequence
[CGGTATCGCTAGCTATGTCCGCTGTTCGTACGGATCGNTTGCTTGGTGTTCTGGGCCCTGTTTTGGCCTCCTACTCTAGCTCTGCCTGGGTTACTTATGCGGTTACCCCTGCCNCTCACCGTTTCGCGCCCNGTACTTGCCGGGGATATAGGTGGTATGTCGGTTTGTTTTTGCTTTCGGAGGCGCTGCCTCCTGTTGCGCAGAGCTNTTGTTGTGCTGGCACAGTACGGATCNAGTACANCAGAAGTAATGCCTTCGTCGTGCTACTATAGCACAGGTTCTGCTGCCGGATTTGTGCATNCAGCTTCCCGCTCGGTAGTCGTCTGCAGTGTTGGNCACTGCTCACGCAGCAAGCAAGCACCCTGGTTTCCCATNTCAAGCCGGCAGCCGATGTGGCGCTTGCAGGCAGCAAATGTGGGTTTTCGTGTCCTGCTGTACAACTGGCTGACAGTTTTGCGATGTATCTCCNTCATGAACGTGGCGTTTGTCAAATGTTCGTTCTTTTCGATGCGCACTGTACACTGGCGAACAGTGGCGGATCGGANAGGCAGCGTTCGTCCGGATCGCTACTAACCAATATTTGCAAAGCTTCCCCCTGCAATACGTTCCAAACACCAATGTCGCGACGATCACCGAGAATACGTTTGCGGAAATCATTCTGTTTACCGGTAGCACTGAACCACACCGTAGCATTAACCTCGGGGATTCTG]
[-] EMBL AL695343 [CGGTATCGCTAGCTATGTCCGCTGTTCGTACGGATCGNTTGCTTGGTGTTCTGGGCCCTGTTTTGGCCTCCTACTCTAGCTCTGCCTGGGTTACTTATGCGGTTACCCCTGCCNCTCACCGTTTCGCGCCCNGTACTTGCCGGGGATATAGGTGGTATGTCGGTTTGTTTTTGCTTTCGGAGGCGCTGCCTCCTGTTGCGCAGAGCTNTTGTTGTGCTGGCACAGTACGGATCNAGTACANCAGAAGTAATGCCTTCGTCGTGCTACTATAGCACAGGTTCTGCTGCCGGATTTGTGCATNCAGCTTCCCGCTCGGTAGTCGTCTGCAGTGTTGGNCACTGCTCACGCAGCAAGCAAGCACCCTGGTTTCCCATNTCAAGCCGGCAGCCGATGTGGCGCTTGCAGGCAGCAAATGTGGGTTTTCGTGTCCTGCTGTACAACTGGCTGACAGTTTTGCGATGTATCTCCNTCATGAACGTGGCGTTTGTCAAATGTTCGTTCTTTTCGATGCGCACTGTACACTGGCGAACAGTGGCGGATCGGANAGGCAGCGTTCGTCCGGATCGCTACTAACCAATATTTGCAAAGCTTCCCCCTGCAATACGTTCCAAACACCAATGTCGCGACGATCACCGAGAATACGTTTGCGGAAATCATTCTGTTTACCGGTAGCACTGAACCACACCGTAGCATTAACCTCGGGGATTCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3875#0 GTTCGGCTGTGCCGGCGGTACGCAGCACGTGCCGCTGATCGACGGATCGCTTGCTGGGGC 60
consensus_3875#1 ---CGGTATCGCTAGCTATGTCCGCTGTTCGT-ACGGATCGNTTGCTTGGTGTTCTGGGC 56
*** ** ** * * * * ***** * * * * ****
consensus_3875#0 GGGGCGGCTGGCCGCCACAC-AGCACGGCGGGAACTA-----GCGA--ACCCG----CCT 108
consensus_3875#1 CCTGTTTTGGCCTCCTACTCTAGCTCTGCCTGGGTTACTTATGCGGTTACCCCTGCCNCT 116
* * * * ** * *** * ** * ** *** **** **
consensus_3875#0 CACCCGTTCGCGCCCG-----TACAGCGGGGAAAGGTGGA--GGCGGGTTGTTTT-GCTG 160
consensus_3875#1 CACCGTTTCGCGCCCNGTACTTGCCGGGGATATAGGTGGTATGTCGGTTTGTTTTTGCTT 176
**** ********* * * * ** * ****** * *** ******* ***
consensus_3875#0 GCGGAGGCGCTGCCTCCTGTT-CGCAGAGCTTTTTGTGCG-TGGCACAGTACGGATCA-G 217
consensus_3875#1 TCGGAGGCGCTGCCTCCTGTTGCGCAGAGCTNTTGTTGTGCTGGCACAGTACGGATCNAG 236
******************** ********* ** ** * **************** *
consensus_3875#0 TACAGCAGAAGTAATGCCTTCGGTCGTGCA--CGTAGCACAGGTTCAGCT-CCGGATTT- 273
consensus_3875#1 TACANCAGAAGTAATGCCTTCG-TCGTGCTACTATAGCACAGGTTCTGCTGCCGGATTTG 295
**** ***************** ****** ************ *** ********
consensus_3875#0 TGCATC-AGCTTCC-GCTCGGTAGTCGTCTGCAGTGTTGGGCACTGCACACGCAGCAAGC 331
consensus_3875#1 TGCATNCAGCTTCCCGCTCGGTAGTCGTCTGCAGTGTTGGNCACTGCTCACGCAGCAAGC 355
***** ******* ************************* ****** ************
consensus_3875#0 AAGCACCC-GGTTTCCCATTC--AGCCGGCAGCCGATGTGGCGCTTGC-GGCAGCAAATG 387
consensus_3875#1 AAGCACCCTGGTTTCCCATNTCAAGCCGGCAGCCGATGTGGCGCTTGCAGGCAGCAAATG 415
******** ********** ************************* ***********
consensus_3875#0 TGGGTTTTCGTGTCCTGCTGTACAACCGGCTGACAGGTTTTGCGATGTATCTCCTTCATG 447
consensus_3875#1 TGGGTTTTCGTGTCCTGCTGTACAACTGGCTGACAG-TTTTGCGATGTATCTCCNTCATG 474
************************** ********* ***************** *****
consensus_3875#0 AACGTGGCGTTTGTCAAATGTTCGTTCTTTTCGATACGC-CTGTACACTGGCGAACAGTG 506
consensus_3875#1 AACGTGGCGTTTGTCAAATGTTCGTTCTTTTCGATGCGCACTGTACACTGGCGAACAGTG 534
*********************************** *** ********************
consensus_3875#0 GCGGATCGGAA-GGCAGCGTTCGTCCGGATCGCTAC-AACCAAT--TTGCAAAGCTTCCC 562
consensus_3875#1 GCGGATCGGANAGGCAGCGTTCGTCCGGATCGCTACTAACCAATATTTGCAAAGCTTCCC 594
********** ************************ ******* **************
consensus_3875#0 C-TGCAA-ACGTTCCAAACACCAATGTCGCGACGATCACCGAGAATACGTTTGCGGAAAT 620
consensus_3875#1 CCTGCAATACGTTCCAAACACCAATGTCGCGACGATCACCGAGAATACGTTTGCGGAAAT 654
* ***** ****************************************************
consensus_3875#0 CATTCTGTTT-CCGTTAGCACTGAACCACACCGTAGCACTCGTCAAGTCCGACTGAACTG 679
consensus_3875#1 CATTCTGTTTACCGGTAGCACTGAACCACACCGTAGCA----TTAACCTCGGGGATTCTG 710
********** *** *********************** * ** ** ***
consensus_3875#0 AACTTCACGGCAGGGCTGAATGAATGGCAAACTCGCGCTAACGAGCGAACGAGAGTCGAA 739
consensus_3875#1 ------------------------------------------------------------
consensus_3875#0 TGGGGATTTTTCTTGTGCGAAGTGTGAGTTCACACGCACAATCGAGCGGGGAATCGGGGT 799
consensus_3875#1 ------------------------------------------------------------
consensus_3875#0 GGGAGACACGAATGAGTGAGAATGTTGCTACTTGTTAGCATATTATTATCTTGAAGAAGG 859
consensus_3875#1 ------------------------------------------------------------
consensus_3875#0 AGGCCCGTCCGATCAGCGGCAAGGCTTGCGAAGGTGGTTGTCACTGGAGAGGAGAGGAGG 919
consensus_3875#1 ------------------------------------------------------------
consensus_3875#0 CGTACATTTCTTTACCCATCTGTGGGTCAGACCGGCCGGTGCTGGGTGGGTTCGTTTCTT 979
consensus_3875#1 ------------------------------------------------------------
consensus_3875#0 CCAGCATATTGGGGATTTCTACTCGCGACAAATCGTGGCAAAAAGAAAAGGATTGCCCTC 1039
consensus_3875#1 ------------------------------------------------------------
consensus_3875#0 ACGAATGACAACCAATGGCGCAATGGGAATGAATCAGATAATAATTAACAAGAAACGAAT 1099
consensus_3875#1 ------------------------------------------------------------
consensus_3875#0 GGTTCTCCTCCGTTATGGTGATTCCTTGCAAGAGCATCATCATATGTTTGAGGTGATTTT 1159
consensus_3875#1 ------------------------------------------------------------
consensus_3875#0 CTGAATGACCCAGGAAGACACATTTTCT 1187
consensus_3875#1 ----------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||