cluster # 3876

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Anopheles gambiae
cluster # 3876 cluster # 3876 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3876#0 length = 640 sequences # 1

consensus_3876#1 length = 324 sequences # 1
consensus_3876#2 length = 270 sequences # 1

consensusID : consensus_3876#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 640
fasta sequence

                              [CCGCGGACGCGTGGGCGGACGCGTGGGCGGCCAAGCGCGCGCGTGGTTGTTGTAGAAGCGAAGGTTTGCAACGCAACGATCGTGTGCCGCACGATAGAAACTGCTCCGCTGCTAAAGACAAAACACAACGCGCTCGATTTGTCCACTGGGGAAGAGGGCCACGGTTCGATCGACGGTGCGTCTTGTTTTGGGTTTCACCCATATTAGCTTACATAGTGCCGCTGCCGACAATGTGCAGTGACGACGATCAGTGTCTCGTACCGTAAAAGTGCTGCCGTAATTTTCGCCCCACTGCCCCACGGAGTCAAACGAACGGTTGTGTTTTTGCTGGTGATCGTGTTAGCGGTGATGGTGATCTTGAAGTGGTGATCGCCCGAAAGGGCAATACAATCAAACTTGAGCGCCCCCTGTCTGCCGCCCACCGTAGATGGCCACCAGCAGCAGGTTGCAACACATTTTAGCCAAGTGAATCGGTGAAATTTAGCAAATTGGACATGCAGTGCATACGTCGACCGTTCCCATTCCGGTGCTAGCAGGTTACATGTGAAGTGTGCATATTTTAAAAACACAACCAAAAAAAAAAAACATCTACCGTGCGGGTTCCAAACGGGTTCGCAAAACTGTGCCAGCACGCCTAGGC]

[+] EMBL BM613405             [CCGCGGACGCGTGGGCGGACGCGTGGGCGGCCAAGCGCGCGCGTGGTTGTTGTAGAAGCGAAGGTTTGCAACGCAACGATCGTGTGCCGCACGATAGAAACTGCTCCGCTGCTAAAGACAAAACACAACGCGCTCGATTTGTCCACTGGGGAAGAGGGCCACGGTTCGATCGACGGTGCGTCTTGTTTTGGGTTTCACCCATATTAGCTTACATAGTGCCGCTGCCGACAATGTGCAGTGACGACGATCAGTGTCTCGTACCGTAAAAGTGCTGCCGTAATTTTCGCCCCACTGCCCCACGGAGTCAAACGAACGGTTGTGTTTTTGCTGGTGATCGTGTTAGCGGTGATGGTGATCTTGAAGTGGTGATCGCCCGAAAGGGCAATACAATCAAACTTGAGCGCCCCCTGTCTGCCGCCCACCGTAGATGGCCACCAGCAGCAGGTTGCAACACATTTTAGCCAAGTGAATCGGTGAAATTTAGCAAATTGGACATGCAGTGCATACGTCGACCGTTCCCATTCCGGTGCTAGCAGGTTACATGTGAAGTGTGCATATTTTAAAAACACAACCAAAAAAAAAAAACATCTACCGTGCGGGTTCCAAACGGGTTCGCAAAACTGTGCCAGCACGCCTAGGC]




>consensus_3876#0
CCGCGGACGCGTGGGCGGACGCGTGGGCGGCCAAGCGCGCGCGTGGTTGTTGTAGAAGCG
AAGGTTTGCAACGCAACGATCGTGTGCCGCACGATAGAAACTGCTCCGCTGCTAAAGACA
AAACACAACGCGCTCGATTTGTCCACTGGGGAAGAGGGCCACGGTTCGATCGACGGTGCG
TCTTGTTTTGGGTTTCACCCATATTAGCTTACATAGTGCCGCTGCCGACAATGTGCAGTG
ACGACGATCAGTGTCTCGTACCGTAAAAGTGCTGCCGTAATTTTCGCCCCACTGCCCCAC
GGAGTCAAACGAACGGTTGTGTTTTTGCTGGTGATCGTGTTAGCGGTGATGGTGATCTTG
AAGTGGTGATCGCCCGAAAGGGCAATACAATCAAACTTGAGCGCCCCCTGTCTGCCGCCC
ACCGTAGATGGCCACCAGCAGCAGGTTGCAACACATTTTAGCCAAGTGAATCGGTGAAAT
TTAGCAAATTGGACATGCAGTGCATACGTCGACCGTTCCCATTCCGGTGCTAGCAGGTTA
CATGTGAAGTGTGCATATTTTAAAAACACAACCAAAAAAAAAAAACATCTACCGTGCGGG
TTCCAAACGGGTTCGCAAAACTGTGCCAGCACGCCTAGGC

consensusID : consensus_3876#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 324
fasta sequence

                              [CACTGGGGAAGAGGGCCACGGTTCGATCGACGGTGCGTCTTGTTTTGGGTTTCACCCATATTAGCTTACATAGTACCGCTGCCGACAATGTGCAGTGACGACGATCAGTGTCTCGTACCGTAAAAGTGCTGCCGTAATTTTCGCCCCACTGCCCCACGGAGTCAAACGAACGGTTGTGTTTTTGCTGGTGATCGTGTTAGCGGTGATGGTGATCTTGAAGTGGTGATCGCCCGAAAGGGCAATACAATCAAAGTGTGTGTAGCCAACGTTAAAAGCAGACAAAAAAGTATGGTGTCCTGGTGATGATGCGTTCTTGCTGCGACG]

[+] EMBL BX616731             [CACTGGGGAAGAGGGCCACGGTTCGATCGACGGTGCGTCTTGTTTTGGGTTTCACCCATATTAGCTTACATAGTACCGCTGCCGACAATGTGCAGTGACGACGATCAGTGTCTCGTACCGTAAAAGTGCTGCCGTAATTTTCGCCCCACTGCCCCACGGAGTCAAACGAACGGTTGTGTTTTTGCTGGTGATCGTGTTAGCGGTGATGGTGATCTTGAAGTGGTGATCGCCCGAAAGGGCAATACAATCAAAGTGTGTGTAGCCAACGTTAAAAGCAGACAAAAAAGTATGGTGTCCTGGTGATGATGCGTTCTTGCTGCGACG]




>consensus_3876#1
CACTGGGGAAGAGGGCCACGGTTCGATCGACGGTGCGTCTTGTTTTGGGTTTCACCCATA
TTAGCTTACATAGTACCGCTGCCGACAATGTGCAGTGACGACGATCAGTGTCTCGTACCG
TAAAAGTGCTGCCGTAATTTTCGCCCCACTGCCCCACGGAGTCAAACGAACGGTTGTGTT
TTTGCTGGTGATCGTGTTAGCGGTGATGGTGATCTTGAAGTGGTGATCGCCCGAAAGGGC
AATACAATCAAAGTGTGTGTAGCCAACGTTAAAAGCAGACAAAAAAGTATGGTGTCCTGG
TGATGATGCGTTCTTGCTGCGACG

consensusID : consensus_3876#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 270
fasta sequence

                              [CCGCCCACGCGTCCGAAAACACAACGCGCTCGATTTGTCCACTGGGGAAGAGGGCCACGGTTCGATCGACGGTGCGTCTTGTTTTGGGTTTCACCCATATTAGCTTACATAGTACCGCTGCCGACAATGTGCAGTGACGACGATCAGTGTCTCGTACCGTAAAAGTGCTGCCGTAATTTTCGCCCCACTGCCCCACGGAGTCAAACGAACGCTTGAGCGCCCCCTGTCTGCCGCCCACCGTAGATGGGCACCAGCAGCAGGTTGCAACAC]

[+] EMBL BM601729             [CCGCCCACGCGTCCGAAAACACAACGCGCTCGATTTGTCCACTGGGGAAGAGGGCCACGGTTCGATCGACGGTGCGTCTTGTTTTGGGTTTCACCCATATTAGCTTACATAGTACCGCTGCCGACAATGTGCAGTGACGACGATCAGTGTCTCGTACCGTAAAAGTGCTGCCGTAATTTTCGCCCCACTGCCCCACGGAGTCAAACGAACGCTTGAGCGCCCCCTGTCTGCCGCCCACCGTAGATGGGCACCAGCAGCAGGTTGCAACAC]




>consensus_3876#2
CCGCCCACGCGTCCGAAAACACAACGCGCTCGATTTGTCCACTGGGGAAGAGGGCCACGG
TTCGATCGACGGTGCGTCTTGTTTTGGGTTTCACCCATATTAGCTTACATAGTACCGCTG
CCGACAATGTGCAGTGACGACGATCAGTGTCTCGTACCGTAAAAGTGCTGCCGTAATTTT
CGCCCCACTGCCCCACGGAGTCAAACGAACGCTTGAGCGCCCCCTGTCTGCCGCCCACCG
TAGATGGGCACCAGCAGCAGGTTGCAACAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3876#0      CCGCGGACGCGTGGGCGGACGCGTGGGCGGCCAAGCGCGCGCGTGGTTGTTGTAGAAGCG 60
consensus_3876#1      ------------------------------------------------------------
consensus_3876#2      ------------------------------------------------------------
                                                                                  

consensus_3876#0      AAGGTTTGCAACGCAACGATCGTGTGCCGCACGATAGAAACTGCTCCGCTGCTAAAGACA 120
consensus_3876#1      ------------------------------------------------------------
consensus_3876#2      --------------------------------------------CCGCCCACGCGTCCGA 16
                                                                                  

consensus_3876#0      AAACACAACGCGCTCGATTTGTCCACTGGGGAAGAGGGCCACGGTTCGATCGACGGTGCG 180
consensus_3876#1      -----------------------CACTGGGGAAGAGGGCCACGGTTCGATCGACGGTGCG 37
consensus_3876#2      AAACACAACGCGCTCGATTTGTCCACTGGGGAAGAGGGCCACGGTTCGATCGACGGTGCG 76
                                             *************************************

consensus_3876#0      TCTTGTTTTGGGTTTCACCCATATTAGCTTACATAGTGCCGCTGCCGACAATGTGCAGTG 240
consensus_3876#1      TCTTGTTTTGGGTTTCACCCATATTAGCTTACATAGTACCGCTGCCGACAATGTGCAGTG 97
consensus_3876#2      TCTTGTTTTGGGTTTCACCCATATTAGCTTACATAGTACCGCTGCCGACAATGTGCAGTG 136
                      ************************************* **********************

consensus_3876#0      ACGACGATCAGTGTCTCGTACCGTAAAAGTGCTGCCGTAATTTTCGCCCCACTGCCCCAC 300
consensus_3876#1      ACGACGATCAGTGTCTCGTACCGTAAAAGTGCTGCCGTAATTTTCGCCCCACTGCCCCAC 157
consensus_3876#2      ACGACGATCAGTGTCTCGTACCGTAAAAGTGCTGCCGTAATTTTCGCCCCACTGCCCCAC 196
                      ************************************************************

consensus_3876#0      GGAGTCAAACGAACGGTTGTGTTTTTGCTGGTGATCGTGTTAGCGGTGATGGTGATCTTG 360
consensus_3876#1      GGAGTCAAACGAACGGTTGTGTTTTTGCTGGTGATCGTGTTAGCGGTGATGGTGATCTTG 217
consensus_3876#2      GGAGTCAAACGAACGCTTGAGCGCCCCCTGTCTGCCGC-CCACCGTAGATGGGCACCAGC 255
                      *************** *** *      ***     **    * **  *****  * *   

consensus_3876#0      AAGTGGTGATCGCCCGAAAGGGCAATACAATCAAACT-TGAGCGCCCCCTGTCTGCCGCC 419
consensus_3876#1      AAGTGGTGATCGCCCGAAAGGGCAATACAATCAAAGTGTGTGTAGCCAACGTTAAAAGCA 277
consensus_3876#2      AGCAGGTTGCAACAC--------------------------------------------- 270
                      *   ***     * *                                             

consensus_3876#0      CACCGTAGATGGCCACCAGCAGCAGGTTGCAACACATTTTAGCCAAGTGAATCGGTGAAA 479
consensus_3876#1      GAC---AAAAAAGTATGGTGTCCTGGTGATGATGCGTTCTTGCTGCGACG---------- 324
consensus_3876#2      ------------------------------------------------------------
                                                                                  

consensus_3876#0      TTTAGCAAATTGGACATGCAGTGCATACGTCGACCGTTCCCATTCCGGTGCTAGCAGGTT 539
consensus_3876#1      ------------------------------------------------------------
consensus_3876#2      ------------------------------------------------------------
                                                                                  

consensus_3876#0      ACATGTGAAGTGTGCATATTTTAAAAACACAACCAAAAAAAAAAAACATCTACCGTGCGG 599
consensus_3876#1      ------------------------------------------------------------
consensus_3876#2      ------------------------------------------------------------
                                                                                  

consensus_3876#0      GTTCCAAACGGGTTCGCAAAACTGTGCCAGCACGCCTAGGC 640
consensus_3876#1      -----------------------------------------
consensus_3876#2      -----------------------------------------