cluster # 3886

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Anopheles gambiae
cluster # 3886 cluster # 3886 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3886#0 length = 683 sequences # 1

consensus_3886#1 length = 633 sequences # 1
consensus_3886#2 length = 623 sequences # 1

consensusID : consensus_3886#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 683
fasta sequence

                              [CCGGTTTTCGGTTTCGTTGCAGCAATTGCGGCGTCCCTTGGTTCGGGTGTTTAGGGAAAAAGTAAATTTTCCACCGTAGGCGCGCGTGGACCGCTTTTCGCGTTAGCGTGCTGTGCGTAGGTGTATGTGTGTGTGTCCCTCCGACATTTTCACCCCAAAGCCGAAGCCTGGGAGTCGGCATTTGGCGTTGTTTTGCGTCTATCCGACGATGCTTGCAGTCGAAGGCAGTGCGTGTAAATAATGGATTTGTTGCGAATTTGAACGTGGCCAAACATTGGTGGTGATGGTGGTGGCTGCCTCTAAATTATCGAAGTGAATCATCGTTCTATCGTAGGATGGGGCAGAAAGTGAAAAGAAGTGAAACAATTTTTGAAAAAACACGCACACCAACACGTGCTGTGTTGTTGTGATAGAAACATTTTAGCCAAACGGGGCATGTCGTTAAGTAAGGAAAGGAACGATTCGCGATTCGTGTGGATGCATTTGTCTGGCAATCGTTCGTTGGCGGCTGGAAGGCGGAAGTTAGAATGGAGATAGGGAGGAGGTTGCGTTAGAACACTCATGTGTATCATGTGGCGAGAAATTAGACCTCCCCCCTGTGCGAGGAAGTGTGTTTCCTTTCTAGCGTGTGTTAAGACAGCGGGGGAATAGTGTTTGTTTATACATCAACTTTGGGATGGTGA]

[+] EMBL BM618881             [CCGGTTTTCGGTTTCGTTGCAGCAATTGCGGCGTCCCTTGGTTCGGGTGTTTAGGGAAAAAGTAAATTTTCCACCGTAGGCGCGCGTGGACCGCTTTTCGCGTTAGCGTGCTGTGCGTAGGTGTATGTGTGTGTGTCCCTCCGACATTTTCACCCCAAAGCCGAAGCCTGGGAGTCGGCATTTGGCGTTGTTTTGCGTCTATCCGACGATGCTTGCAGTCGAAGGCAGTGCGTGTAAATAATGGATTTGTTGCGAATTTGAACGTGGCCAAACATTGGTGGTGATGGTGGTGGCTGCCTCTAAATTATCGAAGTGAATCATCGTTCTATCGTAGGATGGGGCAGAAAGTGAAAAGAAGTGAAACAATTTTTGAAAAAACACGCACACCAACACGTGCTGTGTTGTTGTGATAGAAACATTTTAGCCAAACGGGGCATGTCGTTAAGTAAGGAAAGGAACGATTCGCGATTCGTGTGGATGCATTTGTCTGGCAATCGTTCGTTGGCGGCTGGAAGGCGGAAGTTAGAATGGAGATAGGGAGGAGGTTGCGTTAGAACACTCATGTGTATCATGTGGCGAGAAATTAGACCTCCCCCCTGTGCGAGGAAGTGTGTTTCCTTTCTAGCGTGTGTTAAGACAGCGGGGGAATAGTGTTTGTTTATACATCAACTTTGGGATGGTGA]




>consensus_3886#0
CCGGTTTTCGGTTTCGTTGCAGCAATTGCGGCGTCCCTTGGTTCGGGTGTTTAGGGAAAA
AGTAAATTTTCCACCGTAGGCGCGCGTGGACCGCTTTTCGCGTTAGCGTGCTGTGCGTAG
GTGTATGTGTGTGTGTCCCTCCGACATTTTCACCCCAAAGCCGAAGCCTGGGAGTCGGCA
TTTGGCGTTGTTTTGCGTCTATCCGACGATGCTTGCAGTCGAAGGCAGTGCGTGTAAATA
ATGGATTTGTTGCGAATTTGAACGTGGCCAAACATTGGTGGTGATGGTGGTGGCTGCCTC
TAAATTATCGAAGTGAATCATCGTTCTATCGTAGGATGGGGCAGAAAGTGAAAAGAAGTG
AAACAATTTTTGAAAAAACACGCACACCAACACGTGCTGTGTTGTTGTGATAGAAACATT
TTAGCCAAACGGGGCATGTCGTTAAGTAAGGAAAGGAACGATTCGCGATTCGTGTGGATG
CATTTGTCTGGCAATCGTTCGTTGGCGGCTGGAAGGCGGAAGTTAGAATGGAGATAGGGA
GGAGGTTGCGTTAGAACACTCATGTGTATCATGTGGCGAGAAATTAGACCTCCCCCCTGT
GCGAGGAAGTGTGTTTCCTTTCTAGCGTGTGTTAAGACAGCGGGGGAATAGTGTTTGTTT
ATACATCAACTTTGGGATGGTGA

consensusID : consensus_3886#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 633
fasta sequence

                              [CCGGGTGTTTTCGGTTTCGCTGCAGCAATTGCGGCGTCCTGTGGTTCGGGTGTTTAGGGAAAAAGTAAATTTTCCACCGTAGGCGCGCGTGGACCGCTTTTCGCGTTAGCGTGCTTTGCGTAGGTAGTACCTTTTGAAAACTGAGCGACAGAGCAGCCATTGAACGAAGACCATATGGATAGGAAGAACCGAGTGGCAGTGGAAGTACAAATTTTAGTGAAAACGGTGACTATCGTAAACAAAGAACGGTGTTAGTGGCGAGGAACGGATCGCGTGTGTTGTGCTGCGTCTACGGATACGGGCGGAAATTGCCTTCCGGGCAGGATGGAGGTGTGCTGCTTAAAAATGGCATCCAGATGCAGACCGACGCGACCCATCAAGGACATAACGCAGCTCTCCTCGGCCGGCTCGTCGCACGACTGCGGTGCCCTGTCGCGGGTCGTAATGGTCAGAAAAACGGATCAGCGCGTCATCAATCACAAGGGCAGCCAGAAGGATCCACTGTGTGAGGTCATTACGATGGAAGCGATACAGACGTACAAGGGCCACAAACCGGACCGGACGGTAGTGTTTAGGGAGAAGTTTGATCTCACCGGCAACGACATGTCACGGTCGCTTTCGACCGGCAAAACT]

[+] EMBL BM642945             [CCGGGTGTTTTCGGTTTCGCTGCAGCAATTGCGGCGTCCTGTGGTTCGGGTGTTTAGGGAAAAAGTAAATTTTCCACCGTAGGCGCGCGTGGACCGCTTTTCGCGTTAGCGTGCTTTGCGTAGGTAGTACCTTTTGAAAACTGAGCGACAGAGCAGCCATTGAACGAAGACCATATGGATAGGAAGAACCGAGTGGCAGTGGAAGTACAAATTTTAGTGAAAACGGTGACTATCGTAAACAAAGAACGGTGTTAGTGGCGAGGAACGGATCGCGTGTGTTGTGCTGCGTCTACGGATACGGGCGGAAATTGCCTTCCGGGCAGGATGGAGGTGTGCTGCTTAAAAATGGCATCCAGATGCAGACCGACGCGACCCATCAAGGACATAACGCAGCTCTCCTCGGCCGGCTCGTCGCACGACTGCGGTGCCCTGTCGCGGGTCGTAATGGTCAGAAAAACGGATCAGCGCGTCATCAATCACAAGGGCAGCCAGAAGGATCCACTGTGTGAGGTCATTACGATGGAAGCGATACAGACGTACAAGGGCCACAAACCGGACCGGACGGTAGTGTTTAGGGAGAAGTTTGATCTCACCGGCAACGACATGTCACGGTCGCTTTCGACCGGCAAAACT]




>consensus_3886#1
CCGGGTGTTTTCGGTTTCGCTGCAGCAATTGCGGCGTCCTGTGGTTCGGGTGTTTAGGGA
AAAAGTAAATTTTCCACCGTAGGCGCGCGTGGACCGCTTTTCGCGTTAGCGTGCTTTGCG
TAGGTAGTACCTTTTGAAAACTGAGCGACAGAGCAGCCATTGAACGAAGACCATATGGAT
AGGAAGAACCGAGTGGCAGTGGAAGTACAAATTTTAGTGAAAACGGTGACTATCGTAAAC
AAAGAACGGTGTTAGTGGCGAGGAACGGATCGCGTGTGTTGTGCTGCGTCTACGGATACG
GGCGGAAATTGCCTTCCGGGCAGGATGGAGGTGTGCTGCTTAAAAATGGCATCCAGATGC
AGACCGACGCGACCCATCAAGGACATAACGCAGCTCTCCTCGGCCGGCTCGTCGCACGAC
TGCGGTGCCCTGTCGCGGGTCGTAATGGTCAGAAAAACGGATCAGCGCGTCATCAATCAC
AAGGGCAGCCAGAAGGATCCACTGTGTGAGGTCATTACGATGGAAGCGATACAGACGTAC
AAGGGCCACAAACCGGACCGGACGGTAGTGTTTAGGGAGAAGTTTGATCTCACCGGCAAC
GACATGTCACGGTCGCTTTCGACCGGCAAAACT

consensusID : consensus_3886#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 623
fasta sequence

                              [CCGGAAAAATTTCTCCCCCCCCACACACACTCACACACAAACAAGACCATATGGATAGGAAGAACCGAGTGGCAGTGGAAGTACAAATTTTAGTGAAAACGGTGACTATCGTAAACAAAGAACGGTGTTAGTGGCGAGGAACGGATCGCGTGTGTTGTGCTGCGTCTACGGATACGGGCGGAAATTGCCTTCCGGGCAGGATGGAGGTGTGCTGCTTAAAAATGGCATCCAGATGCAGACCGACGCGACCCATCAAGGACATAACGCAGCTCTCCTCGGCCGGCTCGTCGCACGACTGCGGTGCCCTGTCGCGGGTCGTAATGGTCAGAAAAACGGATCAGCGCGTCATCAATCACAAGGGCAGCCAGAAGGATCCACTGTGTGAGGTCATTACGATGGAAACGATACAGACGTACAAGGGCCACAAACCGGACCGGACGGTAGTGTTTAGGGAGAAGTTTGATCTCACCGGCAACGACATGTCACGGTCGCTTTCGACCGGCAAACTGTCCGTCGGTTCGCCCCGTCTCTCGATATCGCCGCTGCGCACGATCCTGACGACGAGTGCCGAGCCGGAGAAGAGCCGTGCCGCGGCAAGTGATCGAAACAACAACAGCACCACC]

[+] EMBL BM601507             [CCGGAAAAATTTCTCCCCCCCCACACACACTCACACACAAACAAGACCATATGGATAGGAAGAACCGAGTGGCAGTGGAAGTACAAATTTTAGTGAAAACGGTGACTATCGTAAACAAAGAACGGTGTTAGTGGCGAGGAACGGATCGCGTGTGTTGTGCTGCGTCTACGGATACGGGCGGAAATTGCCTTCCGGGCAGGATGGAGGTGTGCTGCTTAAAAATGGCATCCAGATGCAGACCGACGCGACCCATCAAGGACATAACGCAGCTCTCCTCGGCCGGCTCGTCGCACGACTGCGGTGCCCTGTCGCGGGTCGTAATGGTCAGAAAAACGGATCAGCGCGTCATCAATCACAAGGGCAGCCAGAAGGATCCACTGTGTGAGGTCATTACGATGGAAACGATACAGACGTACAAGGGCCACAAACCGGACCGGACGGTAGTGTTTAGGGAGAAGTTTGATCTCACCGGCAACGACATGTCACGGTCGCTTTCGACCGGCAAACTGTCCGTCGGTTCGCCCCGTCTCTCGATATCGCCGCTGCGCACGATCCTGACGACGAGTGCCGAGCCGGAGAAGAGCCGTGCCGCGGCAAGTGATCGAAACAACAACAGCACCACC]




>consensus_3886#2
CCGGAAAAATTTCTCCCCCCCCACACACACTCACACACAAACAAGACCATATGGATAGGA
AGAACCGAGTGGCAGTGGAAGTACAAATTTTAGTGAAAACGGTGACTATCGTAAACAAAG
AACGGTGTTAGTGGCGAGGAACGGATCGCGTGTGTTGTGCTGCGTCTACGGATACGGGCG
GAAATTGCCTTCCGGGCAGGATGGAGGTGTGCTGCTTAAAAATGGCATCCAGATGCAGAC
CGACGCGACCCATCAAGGACATAACGCAGCTCTCCTCGGCCGGCTCGTCGCACGACTGCG
GTGCCCTGTCGCGGGTCGTAATGGTCAGAAAAACGGATCAGCGCGTCATCAATCACAAGG
GCAGCCAGAAGGATCCACTGTGTGAGGTCATTACGATGGAAACGATACAGACGTACAAGG
GCCACAAACCGGACCGGACGGTAGTGTTTAGGGAGAAGTTTGATCTCACCGGCAACGACA
TGTCACGGTCGCTTTCGACCGGCAAACTGTCCGTCGGTTCGCCCCGTCTCTCGATATCGC
CGCTGCGCACGATCCTGACGACGAGTGCCGAGCCGGAGAAGAGCCGTGCCGCGGCAAGTG
ATCGAAACAACAACAGCACCACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3886#1      CCGGGTGTTTTCGGTTTCGCTGCAGCAATTGCGGCGTCCTGTGGTTCGGGTGTTTAGGGA 60
consensus_3886#2      ------------------------------------------------------------
consensus_3886#0      ---CCGGTTTTCGGTTTCGTTGCAGCAATTGCGGCGTCCCTTGGTTCGGGTGTTTAGGGA 57
                                                                                  

consensus_3886#1      AAAAGTAAATTTTCCACCGTAGGCGCGCGTGGACCGCTTTTCGCGTTAGCGTGCTTTGCG 120
consensus_3886#2      ------------------------------------------------------------
consensus_3886#0      AAAAGTAAATTTTCCACCGTAGGCGCGCGTGGACCGCTTTTCGCGTTAGCGTGCTGTGCG 117
                                                                                  

consensus_3886#1      TAGGTAGTACCTTTTGAAAACTGAGCGACAGAGCAGCCATTGAACGAAGACCATATGGAT 180
consensus_3886#2      CCGGAAAAATTTCTCCCCCCCCAC---ACACACTCACACACAAAC-AAGACCATATGGAT 56
consensus_3886#0      TAGGT-GTATGTGTGTGTGTCCCTCCGACATTTTCACCCCAAAGCCGAAGCC-------T 169
                        **    *  * *      *      ***      *     * *  *  **       *

consensus_3886#1      AGGAAGAACCGAGTGGCAGTGGAAGTACAAATTTTAGTGAAAACGGTGACTATCGTAAAC 240
consensus_3886#2      AGGAAGAACCGAGTGGCAGTGGAAGTACAAATTTTAGTGAAAACGGTGACTATCGTAAAC 116
consensus_3886#0      GGGAGTCGGCATTTGGCGTTGT---TTTGCGTCTATCCGACGATGCTTGCAGTCGAAGGC 226
                       ***     *   ****  **    *     * *    **  * * *  *  *** *  *

consensus_3886#1      AAAGAACGGTGTTAGTGGCGAGGAACGGATCGCGTGTGTTGTGCTGCGTCTACGGATACG 300
consensus_3886#2      AAAGAACGGTGTTAGTGGCGAGGAACGGATCGCGTGTGTTGTGCTGCGTCTACGGATACG 176
consensus_3886#0      AGTGCGTGTAAATAATGGATTTGTTGCGAATTTGAACGTGGCCAAACATTGGTGG-TGAT 285
                      *  *   *    ** ***    *    **    *   ** *     * *    ** *   

consensus_3886#1      GGCGGAAATTGCCTTCCGGGCAGGATGGAGGTGTGCTGCTTAAAAATGGCAT----CCAG 356
consensus_3886#2      GGCGGAAATTGCCTTCCGGGCAGGATGGAGGTGTGCTGCTTAAAAATGGCAT----CCAG 232
consensus_3886#0      GGTGGTGGCTGCCTCTAAATTATCGAAGTGAATCATCGTTCTATCGTAGGATGGGGCAGA 345
                      ** **    *****       *     * *       * *  *   * * **    *   

consensus_3886#1      ATGCAGACCGACGCGACCCA---TCAAGGACATAACGCAGCTCTCCTCG-GCCGGCTCGT 412
consensus_3886#2      ATGCAGACCGACGCGACCCA---TCAAGGACATAACGCAGCTCTCCTCG-GCCGGCTCGT 288
consensus_3886#0      AAGTGAAAAGAAGTGAAACAATTTTTGAAAAAACACGCACACCAACACGTGCTGTGTTGT 405
                      * *   *  ** * **  **   *     * *  *****   *  * ** ** *  * **

consensus_3886#1      CGC---ACGACTGCGGTGCCCTGTCGCGGGTCGTAATGGTCAGAAAAACGGATCAGCGCG 469
consensus_3886#2      CGC---ACGACTGCGGTGCCCTGTCGCGGGTCGTAATGGTCAGAAAAACGGATCAGCGCG 345
consensus_3886#0      TGTGATAGAAACATTTTAGCCAAACGGGGCATGTCGTTAAGTAAGGAAAGGAACGATTCG 465
                       *    *  *      *  **   ** **   **  *      *  ** *** *    **

consensus_3886#1      TCATCAATCACAAGGGCAGCCAGAAGG-ATCCACTGTGTGAGGTCATTACGATGGAAGC- 527
consensus_3886#2      TCATCAATCACAAGGGCAGCCAGAAGG-ATCCACTGTGTGAGGTCATTACGATGGAAAC- 403
consensus_3886#0      CGATTCGT-GTGGATGCATTTGTCTGGCAATCGTTCGTTGGCGGCTGGAAGGCGGAAGTT 524
                        **   *       ***       ** *  *  *   **  * *   * *  ****   

consensus_3886#1      --GATACAGACGTACAAGGGCCACAAACCGGAC-CGGACG-GTAGTGTTTAGGGAGAAGT 583
consensus_3886#2      --GATACAGACGTACAAGGGCCACAAACCGGAC-CGGACG-GTAGTGTTTAGGGAGAAGT 459
consensus_3886#0      AGAATGGAGATAGGGAGGAGGTTGCGTTAGAACACTCATGTGTATCATGTGGCGAGAAAT 584
                         **  ***     * * *         * ** *  * * ***   * * * ***** *

consensus_3886#1      TTGATCTCACCGGCA-ACGACATGTCACGGTCGCTTTCGACCG---GCAAAACT------ 633
consensus_3886#2      TTGATCTCACCGGCA-ACGACATGTCACGGTCGCTTTCGACCG---GCAAACTGTCCGTC 515
consensus_3886#0      TAGACCTCCCCCCTGTGCGAGGAAGTGTGTTTCCTTTCTAGCGTGTGTTAAGACAGCGGG 644
                      * ** *** **      ***        * *  ***** * **   *  **         

consensus_3886#1      ------------------------------------------------------------
consensus_3886#2      GGTTCGCCCCGTCTCTCGATATCGCCGCTGCGCACGATCCTGACGACGAGTGCCGAGCCG 575
consensus_3886#0      GGAATAGTGTTTGTTTATACATCAACTTTGGGATGGTGA--------------------- 683
                                                                                  

consensus_3886#1      ------------------------------------------------
consensus_3886#2      GAGAAGAGCCGTGCCGCGGCAAGTGATCGAAACAACAACAGCACCACC 623
consensus_3886#0      ------------------------------------------------