|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3887#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 888 fasta sequence
[CCGGCAAATAAAGCGACCCCGTCTGGTGTGCAATGGCCTCGTCAGATCCGCTGAACGAGTAACTTTCTCAATTTTGTTATCAACGCGAAACGAGAAGAAAGTGCTGCGACCGTTTTGCTACACGCAAAATATAATACCGCCCTGCGCCACCTCTACACACCTTTTCCTGGTCGTCCGTTTGTGTCGTCGTCCCCGGGTGTGGTGTGAGAAAGGATCGGAAAATCGGATTTTCATCTGTGTTGTTGTTTTTTGTTGTTGCGCGTTTGCACTTGGTACGTTTTTTCTCCTACCCCAGACCAAGCAGTGGAGTGGTATTTGCACCAAGTCTAATCGGTGAGAGTAGGTGCGTGTGTGTGCATCGGTCGTCGTGTGGCTAGATGTGAGTTTGTTGTTTATTGCGGTGCAATTGAAACAATCGCAGTGTGCGGAGCGACAAAGTGTCAAGGAAAATCGTCGGAATTGGATTCCGACCTAAGCGTCCGTGCGAAACGACTGTGTGTGTGTGTGCGCGAGTTTTTACCTCGAACTTTTGCGTCGGTCACAGGGCTGACCGTGGCATACAGCAGGAAGTGACCGATGTGTGTCTGTGGCGCTCTGTGTGCCTGTGCACGCGCGTCCGTGTGCGTTCATGTAATTAAAGTTCACCCCTGCAGTCGTCGGGGCGGTTCGTAAAACTTGCTGCAGCGCACCGTGCCCCGTAGCCAGCAGCAGTCGATCGAAATTGTAGTGCGAAAAGAAACGGGCGAGGAGGGGAAAGAGCAACTCTCCATCGACACTTTGTTTTGGTTTTCTAAATTTAGCCACCAGCTAGCTAACCGTTGCGCTCATCTCATTTCTTTTGCCTGCCGAGCGAGGCCAAAATATTGGCAAACTCAACAGCCGAGGACG]
[+] EMBL BM601492 [CCGGCAAATAAAGCGACCCCGTCTGGTGTGCAATGGCCTCGTCAGATCCGCTGAACGAGTAACTTTCTCAATTTTGTTATCAACGCGAAACGAGAAGAAAGTGCTGCGACCGTTTTGCTACACGCAAAATATAATACCGCCCTGCGCCACCTCTACACACCTTTTCCTGGTCGTCCGTTTGTGTCGTCGTCCCCGGGTGTGGTGTGAGAAAGGATCGGAAAATCGGATTTTCATCTGTGTTGTTGTTTTTTGTTGTTGCGCGTTTGCACTTGGTACGTTTTTTCTCCTACCCCAGACCAAGCAGTGGAGTGGTATTTGCACCAAGTCTAATCGGTGAGAGTAGGTGCGTGTGTGTGCATCGGTCGTCGTGTGGCTAGATGTGAGTTTGTTGTTTATTGCGGTGCAATTGAAACAATCGCAGTGTGCGGAGCGACAAAGTGTCAAGGAAAATCGTCGGAATTGGATTCCGACCTAAGCGTCCGTGCGAAACGACTGTGTGTGTGTGTGCGCGAGTTTTTACCTCGAACTTTTGCGTCGGTCACAGGGCTGACCGTGGCATACAGCAGGAAGTGACCGATGTGTGTCTGTGGCGCTCTGTGTGCCTGTGCAC ]
[+] EMBL BM602419 [ ccGATCGGAAAATCGGATTTTCATCTGTGTTGTTGTTTTTTGTTGTTGCGCGTTTGCACTTGGTACGTTTTTTCTCCTACCCCAGACCAAGCAGTGGAGTGGTATTTGCACCAAGTCTAATCGGTGAGAGTAGGTGCGTGTGTGTGCATCGGTCGTCGTGTGGCTAGATGTGAGTTTGTTGTTTATTGCGGTGCAATTGAAACAATCGCAGTGTGCGGAGCGACAAAGTGTCAAGGAAAATCGTCGGAATTGGATTCCGACCTAAGCGTCCGTGCGAAACGACTGTGTGTGTGTGTGCGCGAGTTTTTACCTCGAACTTTTGCGTCGGTCACAGGGCTGACCGTGGCATACAGCAGGAAGTGACCGA GTGTGTCTGTGGCGCTCTGTGTGCCTGTGCACGCGCGTCCGTGTGCGTTCATGTAATTAAAGTTCACCCCTGCAGTCGTCGGGGCGGTTCGTAAAACTTGCTGCAGCGCACCGTGCCCCGTAGCCAGCAGCAGTCGATCGAAATTGTAGTGCGAAAAGAAACGGGCGAGGAGGGGAAAGAGCAACTCTCCATCGACACTTTGTTTTGGTTTTCTAAATTTAGCCACCAGCTAGCTAACCGTTGCGCTCATCTCATTTCTTTTGCCTGCCGAGCGAGGCCAAAATATTGGCAAACTCAACAGCCGAGGACG]
consensusID : consensus_3887#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 623 fasta sequence
[AGAAGAAAGTGCTGCGACCGTTTTGCTACACGCAAAATTTAACACCGCCCTGCGCCACCTCTACACACCTTTTCCTGGTCGTCCGTTTGTGTCGTCGTCCCCGGGTGTGGTGTGAGAAAGGATCGGAAAATCGGATTTTCATCTGTGTTGTTGTTTTTTGTTGTTGCGCGTTTGCACTTGGTACGTTTTTTCTCCTACCCCAGACCAGTCAGTGGAATGGTATTTGCACCAAGTCCAATCGGAAGAAGTGCGTGAGAGTAGGCGTTTGTGTGCATCGTCGTGTGGCTGGATGTGAGTTTGTTGTTTATTGCGGTGCAATTGAAACAATCGCAGTGTGCGGAGCGACAAAGTGTCAAGGAAAATCGTCGGAATTGGACCTAAGCGTCCGTGCGAAACGACTGTGTGTGTGTGTGCGCGAGTTTTTACCTCGAACTTTTGCGTCGGTCACACGGCTGACCGTGGCATACAGCAGGAAGTGACCGAGTGTGTCTGTGGCGCTCTGTGTGCCTGTGCACGCGCGTCCGTGTGCGTTCATGTAATTAAAGTTCACCCCTGCAGTCGTCGGGGCGGTTCGTAAAACTTACTGCAGCGCACCGTGCCCCGTAGCAGTCGATCGAAATTGT]
[+] EMBL BX625870 [AGAAGAAAGTGCTGCGACCGTTTTGCTACACGCAAAATTTAACACCGCCCTGCGCCACCTCTACACACCTTTTCCTGGTCGTCCGTTTGTGTCGTCGTCCCCGGGTGTGGTGTGAGAAAGGATCGGAAAATCGGATTTTCATCTGTGTTGTTGTTTTTTGTTGTTGCGCGTTTGCACTTGGTACGTTTTTTCTCCTACCCCAGACCAGTCAGTGGAATGGTATTTGCACCAAGTCCAATCGGAAGAAGTGCGTGAGAGTAGGCGTTTGTGTGCATCGTCGTGTGGCTGGATGTGAGTTTGTTGTTTATTGCGGTGCAATTGAAACAATCGCAGTGTGCGGAGCGACAAAGTGTCAAGGAAAATCGTCGGAATTGGACCTAAGCGTCCGTGCGAAACGACTGTGTGTGTGTGTGCGCGAGTTTTTACCTCGAACTTTTGCGTCGGTCACACGGCTGACCGTGGCATACAGCAGGAAGTGACCGAGTGTGTCTGTGGCGCTCTGTGTGCCTGTGCACGCGCGTCCGTGTGCGTTCATGTAATTAAAGTTCACCCCTGCAGTCGTCGGGGCGGTTCGTAAAACTTACTGCAGCGCACCGTGCCCCGTAGCAGTCGATCGAAATTGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3887#0 CCGGCAAATAAAGCGACCCCGTCTGGTGTGCAATGGCCTCGTCAGATCCGCTGAACGAGT 60
consensus_3887#1 ------------------------------------------------------------
consensus_3887#0 AACTTTCTCAATTTTGTTATCAACGCGAAACGAGAAGAAAGTGCTGCGACCGTTTTGCTA 120
consensus_3887#1 --------------------------------AGAAGAAAGTGCTGCGACCGTTTTGCTA 28
****************************
consensus_3887#0 CACGCAAAATATAATACCGCCCTGCGCCACCTCTACACACCTTTTCCTGGTCGTCCGTTT 180
consensus_3887#1 CACGCAAAATTTAACACCGCCCTGCGCCACCTCTACACACCTTTTCCTGGTCGTCCGTTT 88
********** *** *********************************************
consensus_3887#0 GTGTCGTCGTCCCCGGGTGTGGTGTGAGAAAGGATCGGAAAATCGGATTTTCATCTGTGT 240
consensus_3887#1 GTGTCGTCGTCCCCGGGTGTGGTGTGAGAAAGGATCGGAAAATCGGATTTTCATCTGTGT 148
************************************************************
consensus_3887#0 TGTTGTTTTTTGTTGTTGCGCGTTTGCACTTGGTACGTTTTTTCTCCTACCCCAGACCAA 300
consensus_3887#1 TGTTGTTTTTTGTTGTTGCGCGTTTGCACTTGGTACGTTTTTTCTCCTACCCCAGACCAG 208
***********************************************************
consensus_3887#0 GCAGTGGAGTGGTATTTGCACCAAGTCTAATCGGTGAGAGTAGGTGCGTGT----GTGTG 356
consensus_3887#1 TCAGTGGAATGGTATTTGCACCAAGTCCAATCGGAAGAAGTGCGTGAGAGTAGGCGTTTG 268
******* ****************** ****** *** *** * ** ** **
consensus_3887#0 CATCGGTCGTCGTGTGGCTAGATGTGAGTTTGTTGTTTATTGCGGTGCAATTGAAACAAT 416
consensus_3887#1 TGTGCATCGTCGTGTGGCTGGATGTGAGTTTGTTGTTTATTGCGGTGCAATTGAAACAAT 328
* ************* ****************************************
consensus_3887#0 CGCAGTGTGCGGAGCGACAAAGTGTCAAGGAAAATCGTCGGAATTGGATTCCGACCTAAG 476
consensus_3887#1 CGCAGTGTGCGGAGCGACAAAGTGTCAAGGAAAATCGTCGGAATTGGA------CCTAAG 382
************************************************ ******
consensus_3887#0 CGTCCGTGCGAAACGACTGTGTGTGTGTGTGCGCGAGTTTTTACCTCGAACTTTTGCGTC 536
consensus_3887#1 CGTCCGTGCGAAACGACTGTGTGTGTGTGTGCGCGAGTTTTTACCTCGAACTTTTGCGTC 442
************************************************************
consensus_3887#0 GGTCACAGGGCTGACCGTGGCATACAGCAGGAAGTGACCGATGTGTGTCTGTGGCGCTCT 596
consensus_3887#1 GGTCACACGGCTGACCGTGGCATACAGCAGGAAGTGACCGA-GTGTGTCTGTGGCGCTCT 501
******* ********************************* ******************
consensus_3887#0 GTGTGCCTGTGCACGCGCGTCCGTGTGCGTTCATGTAATTAAAGTTCACCCCTGCAGTCG 656
consensus_3887#1 GTGTGCCTGTGCACGCGCGTCCGTGTGCGTTCATGTAATTAAAGTTCACCCCTGCAGTCG 561
************************************************************
consensus_3887#0 TCGGGGCGGTTCGTAAAACTTGCTGCAGCGCACCGTGCCCCGTAGCCAGCAGCAGTCGAT 716
consensus_3887#1 TCGGGGCGGTTCGTAAAACTTACTGCAGCGCACCGTGCCCCGTA-------GCAGTCGAT 614
********************* ********************** *********
consensus_3887#0 CGAAATTGTAGTGCGAAAAGAAACGGGCGAGGAGGGGAAAGAGCAACTCTCCATCGACAC 776
consensus_3887#1 CGAAATTGT--------------------------------------------------- 623
*********
consensus_3887#0 TTTGTTTTGGTTTTCTAAATTTAGCCACCAGCTAGCTAACCGTTGCGCTCATCTCATTTC 836
consensus_3887#1 ------------------------------------------------------------
consensus_3887#0 TTTTGCCTGCCGAGCGAGGCCAAAATATTGGCAAACTCAACAGCCGAGGACG 888
consensus_3887#1 ----------------------------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||