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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3889#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1222 fasta sequence
[GCCAGCAATTCCCGCGGTTTATAAATAACCATGCGCTGCTGCATGCATATACCTAACTACAGTTGAGTTTCGGTTCTCTCTTTCGGAGTGATCGTTATACACTAGAATTTGAACTGATCGAGCTGATACCCTCTATATAATCCTACTCTTTAACATTTATCATATCGAAAAGTATTGGTATTTGCCCGCACATGCGGGGCAACAGGCATATGCGTGCTCAATTCAGCATGTATTGCAAATGGTCTAGGCATCTATCACAGNNACCAGGCGCAGTNGCGCCATATGCTGGAATGGTTCATGCACACCAAGATATCCCATATTCATCCCACANGGCTAGTTTGCAATCCGGGATCANAAANCCGGCATCATCCGGTTCTCCGGGCGAGCANCATTGGGCCATTTATNCAAACAAGCAAGCANATAGTCATTTCCCCTATGCCAGACATTGGTACANANACTGGTTAGCAAGGCCAANCAACNAAACNCATCANANCGCACATANTNGGATAGCTAGGCAANCCAAGGCAAAGACCCCATCCAAANANNTATCNTTAGGCTTACACTGCCCAAACACGGCGTGGAACANCAAACCCNNGATNCAAACATACCAAAGACAAAACTACNCCCCNAGANATGGGCGNCAANGCAAGGACGAATCACACAAAACAAACACAATTTAACCNCAACNCCCAAAAAAATCACCAAACCAGGGGGGACGANATANNAACACAAAAGGGNGACCCCCCAAACAAAAAAAAGAATAGGGAAGGCNCGGACAACAGGGGACACAANACNACCAACCACCANAAATACCCGACAACAAAAAGAGGGAGAACCTACAAGGACCACGACACCAACCACAAGAACAGATGGGCGAACANAACAGATGNGANAGACNGACTGAATTGCCACAGAAAACAATNGACCAACATGGCGAACAAAAACAGACNGNANGGGCAAAGGAGGCAAGANTACCGTGANGCNGTAACAACAGCCACNGGATAGNAGCCAGGAGGCAGCNCAAAGAAAAANCGACACATGCAACAGCATCTCAGNANCTAACACAAAACAAACAACCANCACACACACNCANACACGACAANAACTAANCAAAAAGCTCNGTACAACCANNANCCACCATGGGAAAGACGGGAAGCGCANTTACANCCNAAACAACNGAGACACANNACACCAAGCAAACAGAANGAGGAAAAAACAAACA]
[+] EMBL AL695514 [GCCAGCAATTCCCGCGGTTTATAAATAACCATGCGCTGCTGCATGCATATACCTAACTACAGTTGAGTTTCGGTTCTCTCTTTCGGAGTGATCGTTATACACTAGAATTTGAACTGATCGAGCTGATACCCTCTATATAATCCTACTCTTTAACATTTATCATATCGAAAAGTATTGGTATTTGCCCGCACATGCGGGGCAACAGGCATATGCGTGCTCAATTCAGCATGTATTGCAAATGGTCTAGGCATCTATCACAGNNACCAGGCGCAGTNGCGCCATATGCTGGAATGGTTCATGCACACCAAGATATCCCATATTCATCCCACANGGCTAGTTTGCAATCCGGGATCANAAANCCGGCATCATCCGGTTCTCCGGGCGAGCANCATTGGGCCATTTATNCAAACAAGCAAGCANATAGTCATTTCCCCTATGCCAGACATTGGTACANANACTGGTTAGCAAGGCCAANCAACNAAACNCATCANANCGCACATANTNGGATAGCTAGGCAANCCAAGGCAAAGACCCCATCCAAANANNTATCNTTAGGCTTACACTGCCCAAACACGGCGTGGAACANCAAACCCNNGATNCAAACATACCAAAGACAAAACTACNCCCCNAGANATGGGCGNCAANGCAAGGACGAATCACACAAAACAAACACAATTTAACCNCAACNCCCAAAAAAATCACCAAACCAGGGGGGACGANATANNAACACAAAAGGGNGACCCCCCAAACAAAAAAAAGAATAGGGAAGGCNCGGACAACAGGGGACACAANACNACCAACCACCANAAATACCCGACAACAAAAAGAGGGAGAACCTACAAGGACCACGACACCAACCACAAGAACAGATGGGCGAACANAACAGATGNGANAGACNGACTGAATTGCCACAGAAAACAATNGACCAACATGGCGAACAAAAACAGACNGNANGGGCAAAGGAGGCAAGANTACCGTGANGCNGTAACAACAGCCACNGGATAGNAGCCAGGAGGCAGCNCAAAGAAAAANCGACACATGCAACAGCATCTCAGNANCTAACACAAAACAAACAACCANCACACACACNCANACACGACAANAACTAANCAAAAAGCTCNGTACAACCANNANCCACCATGGGAAAGACGGGAAGCGCANTTACANCCNAAACAACNGAGACACANNACACCAAGCAAACAGAANGAGGAAAAAACAAACA]
consensusID : consensus_3889#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 583 fasta sequence
[AAGAATCGCCCGAGGTNTATAAATAAACCATTGCGCTGATGATGCAGATCAACAGAACTACAGTTGAGTTTCGGTTCTCTCTTTCGGAGTGATCGTTATACACTAGAATTTGAACTGATCGAGCTGATACCCTCTATATAATCCTCTCTTTAACATTTATCATTCGAAAAGTTACTGTTTTGCCGAATGCGGGGAAAGGATTGCTGCTAATTAGCATGTTTGCAATGTCTAGATCTTACAGCCAGGCGAGTTGCGCATTGCTGAATGTTTATGAACAAGTTATCCATTTATCCAAGGGCTAGTTGAATCGGTAAACCGATATCGTTCGGCGGAGATGGCATTTAAAGAGAATGTATTCCTTGAGCATGTNAAACGTGAAGCACACAACATAACGAATTTCGTCGTAGAACAAGAAGCCTCAAACTTCTGCTACGCAATGTGATACGTNTATCAGTATCCTTCTGCAACAGNTCAACATATTCAACCATNTCATNGGCCTCTNTAATTGGGCCATNTAATTGCGCGACCGGCAACACTACATTCGTTNCAGCGGGGATAAGCAAAANTCCATGACGTGGNNACT]
[+] EMBL AL931697 [AAGAATCGCCCGAGGTNTATAAATAAACCATTGCGCTGATGATGCAGATCAACAGAACTACAGTTGAGTTTCGGTTCTCTCTTTCGGAGTGATCGTTATACACTAGAATTTGAACTGATCGAGCTGATACCCTCTATATAATCCTCTCTTTAACATTTATCATTCGAAAAGTTACTGTTTTGCCGAATGCGGGGAAAGGATTGCTGCTAATTAGCATGTTTGCAATGTCTAGATCTTACAGCCAGGCGAGTTGCGCATTGCTGAATGTTTATGAACAAGTTATCCATTTATCCAAGGGCTAGTTGAATCGGTAAACCGATATCGTTCGGCGGAGATGGCATTTAAAGAGAATGTATTCCTTGAGCATGTNAAACGTGAAGCACACAACATAACGAATTTCGTCGTAGAACAAGAAGCCTCAAACTTCTGCTACGCAATGTGATACGTNTATCAGTATCCTTCTGCAACAGNTCAACATATTCAACCATNTCATNGGCCTCTNTAATTGGGCCATNTAATTGCGCGACCGGCAACACTACATTCGTTNCAGCGGGGATAAGCAAAANTCCATGACGTGGNNACT]
consensusID : consensus_3889#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 447 fasta sequence
[TGCTACGCAATGTGATACGTTATCAGTATCCTTTGCAACAGCTCAACATATTCAACCATTTTATGGCTTTAATTGGCCCATTAATTGCGCGACGGAAACTACATTCGTTTAGGGGATAAGAAAATCATGAGTGGAACTGTGCGTGTTCAGAATGAATGCTATAGAGTAGAGGGAGTCTTACGAAAGCATGTTACAGCCAAGAAACTATTTAAATATATTTAAAAAAAACACACACACACATATATACACAATCATTACTCCTCTGGGGCGGCACATAAACCAGAACAGAGAGAGAGAGAGAGAGAGAGAGGGAAAAACCATATAAAAATGAAAAATTAGGGAACTCTGGTATAAGTAAACAAACAAGCAAACGAAAAAGTATGTTACTGATAATGCGCAAATACTCCTTTTTACAATAAATCGAAACCTGTTTGTCTACAGTATGTG]
[+] EMBL BX613405 [TGCTACGCAATGTGATACGTTATCAGTATCCTTTGCAACAGCTCAACATATTCAACCATTTTATGGCTTTAATTGGCCCATTAATTGCGCGACGGAAACTACATTCGTTTAGGGGATAAGAAAATCATGAGTGGAACTGTGCGTGTTCAGAATGAATGCTATAGAGTAGAGGGAGTCTTACGAAAGCATGTTACAGCCAAGAAACTATTTAAATATATTTAAAAAAAACACACACACACATATATACACAATCATTACTCCTCTGGGGCGGCACATAAACCAGAACAGAGAGAGAGAGAGAGAGAGAGAGGGAAAAACCATATAAAAATGAAAAATTAGGGAACTCTGGTATAAGTAAACAAACAAGCAAACGAAAAAGTATGTTACTGATAATGCGCAAATACTCCTTTTTACAATAAATCGAAACCTGTTTGTCTACAGTATGTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3889#0 GCCAGCAATTCCCGCGGTTTATAAATAA-CCAT-GCGCTGCTGCATGCATAT--ACCTAA 56
consensus_3889#1 --AAGAATCGCCCGAGGTNTATAAATAAACCATTGCGCTGATG-ATGCAGATCAACAGAA 57
consensus_3889#2 ------------------------------------------------------------
consensus_3889#0 CTACAGTTGAGTTTCGGTTCTCTCTTTCGGAGTGAT-CGTTATACACTAGAATTTG-AAC 114
consensus_3889#1 CTACAGTTGAGTTTCGGTTCTCTCTTTCGGAGTGAT-CGTTATACACTAGAATTTG-AAC 115
consensus_3889#2 --------------------TGCTACGCAATGTGATACGTTAT-CAGTATCCTTTGCAAC 39
* * ***** ****** ** ** **** ***
consensus_3889#0 TGATCGAGCTGAT-ACCCTCTATATAATCCTACTCTTTAACATTTATCATATCGAAAAGT 173
consensus_3889#1 TGATCGAGCTGAT-ACCCTCTATATAATCCT-CTCTTTAACATTTATCAT-TCGAAAAGT 172
consensus_3889#2 AGCTCAACATATTCAACCATTTTATGGCTTTAAT-TGGCCCATTAATTGC-GCGACGGAA 97
* ** * * * * ** * *** * * * **** ** ***
consensus_3889#0 ATTGGTATTTGCCCGCACATGCGGGGCAACAGGCATATGCGTGCTCAA-TTCAGCATGTA 232
consensus_3889#1 --TACTGTTTTGCCGAA--TGCGGGGAAA---GGAT-TGC-TGCTAA---TTAGCATGT- 219
consensus_3889#2 ACTAC-ATTCGTTTAGGGGATAAGAAAATCATGAGTGGAACTGTGCGTGTTCAGAATGAA 156
* ** * * * * ** * ** ***
consensus_3889#0 TTGCAAATGGTCTAGGCATCTATCACAGNNACCAGGCGCAGTNGCGCCATATGCTGGAAT 292
consensus_3889#1 TTGCAAT--GTCTAGATCTT-------ACAGCCAGGCG-AGTTGCGC-AT-TGCTGAA-- 265
consensus_3889#2 TGCTATAGAGTAGAGGGAGTC-TTACGAAAGCATGTTACAGCCAAGAAACTATTTAAATA 215
* * ** ** * * ** * * * *
consensus_3889#0 GGTTCATGCACACCA-AGATATCCCATATTCATCCCACANGGCTAGTTTGCAATCCGGGA 351
consensus_3889#1 TGTTTATGAA---CA-AGTTATCC---ATTTATCCA--AGGGCTAGTT---------GAA 307
consensus_3889#2 TATTTAAAAAAAACACACACACAC---ATATATACACAATCATTACTCC-----TCTGGG 267
** * * ** * * * ** ** * * ** * *
consensus_3889#0 TCANAAANCCGGCATCATCCGGTTCTCCGGGCGAGCANCATTGGGCCATTTATNCAAACA 411
consensus_3889#1 TCGGTAAACCGATATCGTTCGG----CGGAGATGGCATTTAAAGAGAATGTATTCCT-TG 362
consensus_3889#2 GCGGCACATAAACCAGAACAGAGAGAGAGAGAGAGAGAGAGAGGGAAA---AACCATATA 324
* * * * * * * * * *
consensus_3889#0 AGCAAGCANATAGTCATTTCCCCTATGCCAGACATTGGTACANANACTGGTTAGCAAGGC 471
consensus_3889#1 AGCATGTNAAACGTGAAGCACACAACATAACGAATTTCGTCGTAGAACAAGAAGCC--TC 420
consensus_3889#2 AAAATGAAAAATTAGGGAACTCTGGTATAAGTAA-------ACAAACAAGCAAACGA--- 374
* * * * * * * * * *
consensus_3889#0 CAANCAACNAAACNCATCANANCGCACATANTNGGATAGCTAGGCAANCCAAGGCAAAGA 531
consensus_3889#1 AAACTTCTGCTACGCAATGTGATACGTNTATCAGTATCCTTCTGCAAC--AGNTCAACAT 478
consensus_3889#2 AAAAGTATGTTACTGATAATG-CGCAAATACT----CCTTTTTACAATAAATCGAAACCT 429
** ** * * ** * *** * **
consensus_3889#0 CCCCATCCAAANANNTATCNTTAGGCTTACACTGCCCAAACACGGCGTGGAACANCAAAC 591
consensus_3889#1 ATTCAACCATNTCATNGGCCT----CTNTAATTGGGCCATNTAATTGCGCGACCGGCAAC 534
consensus_3889#2 GTTTGTCTACAGTATGTG------------------------------------------ 447
* *
consensus_3889#0 CCNNGATNCAAACATACCAAAGACAAAACTACNCCCCNAGANATGGGCGNCAANGCAAGG 651
consensus_3889#1 ACTACATTCGT-TNCAGCGGGGATAAG-CAAAANTCCATGACGTGGNNACT--------- 583
consensus_3889#2 ------------------------------------------------------------
consensus_3889#0 ACGAATCACACAAAACAAACACAATTTAACCNCAACNCCCAAAAAAATCACCAAACCAGG 711
consensus_3889#1 ------------------------------------------------------------
consensus_3889#2 ------------------------------------------------------------
consensus_3889#0 GGGGACGANATANNAACACAAAAGGGNGACCCCCCAAACAAAAAAAAGAATAGGGAAGGC 771
consensus_3889#1 ------------------------------------------------------------
consensus_3889#2 ------------------------------------------------------------
consensus_3889#0 NCGGACAACAGGGGACACAANACNACCAACCACCANAAATACCCGACAACAAAAAGAGGG 831
consensus_3889#1 ------------------------------------------------------------
consensus_3889#2 ------------------------------------------------------------
consensus_3889#0 AGAACCTACAAGGACCACGACACCAACCACAAGAACAGATGGGCGAACANAACAGATGNG 891
consensus_3889#1 ------------------------------------------------------------
consensus_3889#2 ------------------------------------------------------------
consensus_3889#0 ANAGACNGACTGAATTGCCACAGAAAACAATNGACCAACATGGCGAACAAAAACAGACNG 951
consensus_3889#1 ------------------------------------------------------------
consensus_3889#2 ------------------------------------------------------------
consensus_3889#0 NANGGGCAAAGGAGGCAAGANTACCGTGANGCNGTAACAACAGCCACNGGATAGNAGCCA 1011
consensus_3889#1 ------------------------------------------------------------
consensus_3889#2 ------------------------------------------------------------
consensus_3889#0 GGAGGCAGCNCAAAGAAAAANCGACACATGCAACAGCATCTCAGNANCTAACACAAAACA 1071
consensus_3889#1 ------------------------------------------------------------
consensus_3889#2 ------------------------------------------------------------
consensus_3889#0 AACAACCANCACACACACNCANACACGACAANAACTAANCAAAAAGCTCNGTACAACCAN 1131
consensus_3889#1 ------------------------------------------------------------
consensus_3889#2 ------------------------------------------------------------
consensus_3889#0 NANCCACCATGGGAAAGACGGGAAGCGCANTTACANCCNAAACAACNGAGACACANNACA 1191
consensus_3889#1 ------------------------------------------------------------
consensus_3889#2 ------------------------------------------------------------
consensus_3889#0 CCAAGCAAACAGAANGAGGAAAAAACAAACA 1222
consensus_3889#1 -------------------------------
consensus_3889#2 -------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||