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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3896#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 790 fasta sequence
[AGAATCCCCGCGGTTTATAAACGAGCCGGTACACGTNTTGTCCCCCCCTTCAAATTGTGCGTGCTTTTGTGAAGGTGTGTGTTTTACGGGTGTGTTTGTGATTAAAGTTTCCTCTTCAAAAATTAAAGGTGATACGTGTAACTACACTCGATAACTACAGCTACCGGCACGAGTATCCTGTGTATCCTGAGGCATTGCAGAAGAAGCGAAACACTCCCATCCGTCCCCCATTTACCCACCGATCGTTCTTGGAGTTAAATTAACACGGATTAAGCAGCAGAACTGACGTACAAAAATGACCAACTAAACATCGACTCAACAAAAGGCCCCCGAAGCTGTACTGCACCGTACAGNTTCGACTTGGCTGGAAAAGGTTCACAANTTATTGGCCCANGGACGGAGNGCTGTCGCCGCAGCGCATTGAACGGACATGCCGGAGAAGAAAANGCCCCTTGCAAGGCCAGCTATACCCNCGCGAAGATGGGATTCGCCCAAAACATTCCCGCNTGCATACCGNCAAAGTTGACCGCAACGGGGACAGACAAACCGTTCCCTTGTTGGCAGCNCNCTTCTGCGNCACGAAACAACAGCTCCCTTCNCAANTACCCTGNGGAGGCNGCACCGCGCACCATTCGCTAGCGGNCGGCAAAGTCAACCCCTTGGACCCCAACTCCCNGGGGCACGGCGGTCTAATNNACCCAGCCACTTGGGTTTCCTTTCCACAAANCTTGTGACATTTCACACGATCCCCCNGAACNCTTGGGAAACGGGCCGANACAACCACTCTCGC]
[+] EMBL AL695614 [AGAATCCCCGCGGTTTATAAACGAGCCGGTACACGTNTTGTCCCCCCCTTCAAATTGTGCGTGCTTTTGTGAAGGTGTGTGTTTTACGGGTGTGTTTGTGATTAAAGTTTCCTCTTCAAAAATTAAAGGTGATACGTGTAACTACACTCGATAACTACAGCTACCGGCACGAGTATCCTGTGTATCCTGAGGCATTGCAGAAGAAGCGAAACACTCCCATCCGTCCCCCATTTACCCACCGATCGTTCTTGGAGTTAAATTAACACGGATTAAGCAGCAGAACTGACGTACAAAAATGACCAACTAAACATCGACTCAACAAAAGGCCCCCGAAGCTGTACTGCACCGTACAGNTTCGACTTGGCTGGAAAAGGTTCACAANTTATTGGCCCANGGACGGAGNGCTGTCGCCGCAGCGCATTGAACGGACATGCCGGAGAAGAAAANGCCCCTTGCAAGGCCAGCTATACCCNCGCGAAGATGGGATTCGCCCAAAACATTCCCGCNTGCATACCGNCAAAGTTGACCGCAACGGGGACAGACAAACCGTTCCCTTGTTGGCAGCNCNCTTCTGCGNCACGAAACAACAGCTCCCTTCNCAANTACCCTGNGGAGGCNGCACCGCGCACCATTCGCTAGCGGNCGGCAAAGTCAACCCCTTGGACCCCAACTCCCNGGGGCACGGCGGTCTAATNNACCCAGCCACTTGGGTTTCCTTTCCACAAANCTTGTGACATTTCACACGATCCCCCNGAACNCTTGGGAAACGGGCCGANACAACCACTCTCGC]
consensusID : consensus_3896#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 677 fasta sequence
[GAATCGGCCGAGGATGATTCTATAATTAGCACTGGCGTNCGATTATGAATCTCACCCTGACCATACACGACGTCAGCGCGTAAACACAATCGAGCAATTTCATGCTGTAAATGGAGTGGCAAATAGCGAATTCAACACCACCACCACCAATACCACTAAACACGTGCCGGCAATGGAGAAAGTTATACCAGCCGATGACCAATAAAATCGAGCCTCAACAAAGCCCCCGAAGCGTACGCACCGTACAGCTTCGACCTGCCGGACAAGTTCAAAATTATGGCCCAGGACGAGCTGCGCGAGGATGACGACATGCGGGAGAACGCCCTGAAGCAGTTCCGCGAGTGGATCGCCAAAGCATCCGCGTGATCCGCAAGTGCCGCAACGGACGCACCGGTTCCTGTTTGCGCTTTCTGCGCACGAAAAAGTTCTCCATGCCCGGCGGCGACGGAGGATGCTGGAGAAGTACCTGACCATCCGGCAGGTCTATCCGCACTGGTTCTTCAAACTGGACATTAACGATCCCGACCTGGAGGCGATCATCGAACAGCGGGTATATCTGTTTGCGCTGCCCGGAGCGTGACGAGCAATGGGCGCAAGATCATCTTCTCCAACGCGGGCAAGGTTCGATACGGAGCCGGGTTCACGTCGGGCCAGCGTGATCCAAGATCCACTCGATN]
[+] EMBL BX468574 [GAATCGGCCGAGGATGATTCTATAATTAGCACTGGCGTNCGATTATGAATCTCACCCTGACCATACACGACGTCAGCGCGTAAACACAATCGAGCAATTTCATGCTGTAAATGGAGTGGCAAATAGCGAATTCAACACCACCACCACCAATACCACTAAACACGTGCCGGCAATGGAGAAAGTTATACCAGCCGATGACCAATAAAATCGAGCCTCAACAAAGCCCCCGAAGCGTACGCACCGTACAGCTTCGACCTGCCGGACAAGTTCAAAATTATGGCCCAGGACGAGCTGCGCGAGGATGACGACATGCGGGAGAACGCCCTGAAGCAGTTCCGCGAGTGGATCGCCAAAGCATCCGCGTGATCCGCAAGTGCCGCAACGGACGCACCGGTTCCTGTTTGCGCTTTCTGCGCACGAAAAAGTTCTCCATGCCCGGCGGCGACGGAGGATGCTGGAGAAGTACCTGACCATCCGGCAGGTCTATCCGCACTGGTTCTTCAAACTGGACATTAACGATCCCGACCTGGAGGCGATCATCGAACAGCGGGTATATCTGTTTGCGCTGCCCGGAGCGTGACGAGCAATGGGCGCAAGATCATCTTCTCCAACGCGGGCAAGGTTCGATACGGAGCCGGGTTCACGTCGGGCCAGCGTGATCCAAGATCCACTCGATN]
consensusID : consensus_3896#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 595 fasta sequence
[CCGCCCACGCGTCCGCCAGCACGCACGGTCACAGTCTGCTTTGGTCCGTCTCGGAATTCGGAAGTGTGTTTCTGCACCCAACCCAATCATCAGAAGAAAGCCCTCCCGCCCCCCAAAACACCGTTCCCTTTCCTTTCGGGCATCCAACTCTCCCCTCTTGTCTTTCACGATCACACATTTCCTGGATCTTCCCGTTTCAAACGAGCCGGTACACGTTTTGTCCCCCCCTTCAAATTGTGATCGTGTAACTACACTCGATAACTACAGCACCGGCACGAGTATCCTGTGTATCCCGAGCATTGCAGAAGAAGCGAAACACTCCCATCCGCTCCCCCCATTTCCCACCGATCGTTTTGGAGTTAATTAACACGGATTAGCAGCAGAACTGACGTACAAAAATGACCAATAAAATCGACCTCAACAAAGCCCCCGAAGCGTACGCACCGTACAGCTTCGACCTGCCGGACAAGTTCAAAATTATGGCCCAGGACGAGCTGCGCGAGGATGACGACATGCGGGAGAACGCCCTGAAGCAGTTCCGCGAGTGGATCGCCAAACATCCGCTGATCCGCAAGTGCCGCACGGACGCACCGTT]
[+] EMBL BM633248 [CCGCCCACGCGTCCGCCAGCACGCACGGTCACAGTCTGCTTTGGTCCGTCTCGGAATTCGGAAGTGTGTTTCTGCACCCAACCCAATCATCAGAAGAAAGCCCTCCCGCCCCCCAAAACACCGTTCCCTTTCCTTTCGGGCATCCAACTCTCCCCTCTTGTCTTTCACGATCACACATTTCCTGGATCTTCCCGTTTCAAACGAGCCGGTACACGTTTTGTCCCCCCCTTCAAATTGTGATCGTGTAACTACACTCGATAACTACAGCACCGGCACGAGTATCCTGTGTATCCCGAGCATTGCAGAAGAAGCGAAACACTCCCATCCGCTCCCCCCATTTCCCACCGATCGTTTTGGAGTTAATTAACACGGATTAGCAGCAGAACTGACGTACAAAAATGACCAATAAAATCGACCTCAACAAAGCCCCCGAAGCGTACGCACCGTACAGCTTCGACCTGCCGGACAAGTTCAAAATTATGGCCCAGGACGAGCTGCGCGAGGATGACGACATGCGGGAGAACGCCCTGAAGCAGTTCCGCGAGTGGATCGCCAAACATCCGCTGATCCGCAAGTGCCGCACGGACGCACCGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3896#0 ------------------------------------------------------------
consensus_3896#2 CCGCCCACGCGTCCGCCAGCACGCACGGTCACAGTCTGCTTTGGTCCGTCTCGGAATTCG 60
consensus_3896#1 ------------------------------------------------------------
consensus_3896#0 ------------------------------------AGAATCCCCGCGGTTTATAAACGA 24
consensus_3896#2 GAAGTGTGTTTCTGCACCCAACCCAATCATCAGAAGAAAGCCCTCCCGCCCCCCAAAACA 120
consensus_3896#1 ------------------------------------------------------------
consensus_3896#0 GCCGGTACACGTNTTGTCCCCCCCTTCAAATTGTGCGTGCT-TTTGTGAAGGT-GTGTGT 82
consensus_3896#2 --CCGTTCCCTTTCCTTTCGGGCATCCAACTCTCCCCTCTTGTCTTTCACGATCACACAT 178
consensus_3896#1 ------------------------------------------------------------
consensus_3896#0 TTTACGGGTGTGTTTGT------------GATTAAAGTTTCCTCTTCAAAAATTAAAGGT 130
consensus_3896#2 TTCCTGGATCTTCCCGTTTCAAACGAGCCGGTACACGTTTTGTCCCCCCCTTCAAATTGT 238
consensus_3896#1 -----GAATCGGCCGAG------------GATGATTCTATAATTAGCACTGGCGTNCGAT 43
* * * * * * * * *
consensus_3896#0 GATACGTGTAACTACACTCGATAACTACAGCTACCGGCACGAGTATCCTGTGTATCCTGA 190
consensus_3896#2 GAT-CGTGTAACTACACTCGATAACTACAGC-ACCGGCACGAGTATCCTGTGTATCCCGA 296
consensus_3896#1 TATGAATCTCACCCTGACCATACACGACGTCAGCGCGTAAACACAATCGAGCAATTTCAT 103
** * * ** * ** ** * * * * * * **
consensus_3896#0 GGCATTGCAGAAGAAGCGAAACACTCCCATCCG-TCCCCCATTTACCCACCGATCGTTCT 249
consensus_3896#2 G-CATTGCAGAAGAAGCGAAACACTCCCATCCGCTCCCCCCATTTCCCACCGATCGTT-T 354
consensus_3896#1 G---CTGTAAATGGAGTGGCAAAT----AGCGAATTCAACA-----CCACC-ACCACCAA 150
* ** * * * ** * * * * * * * * ***** * *
consensus_3896#0 TGGAGTTAAATTAACACGGATTAAGCAGCAGAACTGACGTACAAAAATGACCAACTAAAC 309
consensus_3896#2 TGGAGTTAA-TTAACACGGATTA-GCAGCAGAACTGACGTACAAAAATGACCAATAAAA- 411
consensus_3896#1 TACCACTAAACACGTGCCGGCAA--TGGAGAAAGTTATACCAGCCGATGACCAATAAAA- 207
* *** * * * * ** * * ******** ***
consensus_3896#0 ATCGA-C-TCAACAAAAGGCCCCCGAAGCTGTACTGCACCGTACAGNTTCGACTTGGCTG 367
consensus_3896#2 -TCGA-CCTCAACAAA--GCCCCCGAAGC-GTAC-GCACCGTACAGCTTCGACCTGCC-- 463
consensus_3896#1 -TCGAGCCTCAACAAA--GCCCCCGAAGC-GTAC-GCACCGTACAGCTTCGACCTGCC-- 260
**** * ******** *********** **** *********** ****** ** *
consensus_3896#0 GAAAAGGTTCACAANTTATTGGCCCANGGACGGAGNGCTGTCGCCGCAGCGCATTGAACG 427
consensus_3896#2 GGACAAGTTCA-AAATTAT-GGCCCAGGAC----GAGCTGC-------GCGAGGATGACG 510
consensus_3896#1 GGACAAGTTCA-AAATTAT-GGCCCAGGAC----GAGCTGC-------GCGAGGATGACG 307
* * * ***** ** **** ****** * * **** *** ***
consensus_3896#0 GACATGCCGGAGAAGAAAANGCCCCTTGCAAGGCCAGCTATACCCNCGCGAA-GATGGGA 486
consensus_3896#2 -ACATGCGGGAG-----AACGCCCTGAAGCAGTTCCGCGAGTGGATCGCCAA-ACATCCG 563
consensus_3896#1 -ACATGCGGGAG-----AACGCCCTGAAGCAGTTCCGCGAGTGGATCGCCAAAGCATCCG 361
****** **** ** **** ** * ** * *** **
consensus_3896#0 T-TCGCCCAAAACATTCCCG-CNTGCATACCG-NCAAAGTTGACCGCAACGGGGACAGAC 543
consensus_3896#2 C-TGATCCGCAAGTGCCGCA-CGGACGCACCG-TT------------------------- 595
consensus_3896#1 CGTGATCCGCAAGTGCCGCAACGGACGCACCGGTTCCTGTTTGCGCTTTCTGCGCACGAA 421
* ** ** * * * * ****
consensus_3896#0 AAACCGTTCCCTTGTTGGCAGCNCNCTTCTGCGNCACGAAACAAC---AGCTCCCTTCNC 600
consensus_3896#2 ------------------------------------------------------------
consensus_3896#1 AAAGTTCTCCATGCCCGGCGGCGACGGAGGATGCTGGAGAAGTACCTGACCATCCGGCAG 481
consensus_3896#0 AANTACCCTGNGGAGGCNGCACCGCGCACCATTCGCTAGCGGNCGGCAAAGTCAACCCCT 660
consensus_3896#2 ------------------------------------------------------------
consensus_3896#1 GTCTATCCGCACTGGTTCTTCAAACTGGACATTAACGATCCCGACCTGGAGGCGATCATC 541
consensus_3896#0 TGGACCCCAACTCCCNGGGGCACGGCGGTCTAATNNACCCAGCCACTTGG-----GTTTC 715
consensus_3896#2 ------------------------------------------------------------
consensus_3896#1 GAACAGCGGGTATATCTGTTTGCGCTGCCCGGAGCGTGACGAGCAATGGGCGCAAGATCA 601
consensus_3896#0 CTTTCCACAAANCTTGTGACATTTCACACG-ATCCCCCNGAACNCTTGGGAAACGGGCCG 774
consensus_3896#2 ------------------------------------------------------------
consensus_3896#1 TCTTCTCCAACGCGGGCAAGGTTCGATACGGAGCCGGGTTCACGTCGGGCCAGCGTGATC 661
consensus_3896#0 ANACAACCACTCTCGC 790
consensus_3896#2 ----------------
consensus_3896#1 CAAGATCCACTCGATN 677
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||