|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3900#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1222 fasta sequence
[AGCAGCTGGCGGAGCATGAGGTTAACAAACACGCGGCCCAGTTCCCGTGCGCCATTATTCGGCCGAGCATGATTACCGGTGCCTGGAAGGAGCCTACCCCCGGCTGGACAATCTCCAAGAACGGGCCGCAAGGTTTCCTCATGGGTGCGTCCAAGGGCGTCATCCGCCGTCTGCCCGTCGGCGTGGATCTCGTCTACGACTACATCCCGGTCGATGCCGTCGTCAACCAGACGCTCGTACTTGGTTGGTACATGGGCACAAACAGCTTCCGCGAGGTGAAAGTGTTCCACTGTACGTCCAGCACATCGAACCCGTTCAAGTGGAACTCGGTCGTTGATCATGTGAACGATCATCTGCACAAGTACCCGCTGAAATCGGCCATCTGGTACCCACGGTTGAAGTTCGTCTCGAGCCTATGGGTGTACAAGCTGGCCTCGATCTTTGTGCACATACTGCCCGCACTGGTGCTGGACCTGCTGCTGCGGGTGACCGGCGGTCGGCCCATGCTGATGCGCCTCCACACGAACGTGTGGGAGTCGCTGAACCGGCTGGAGAAGTTCATCTTCACCGAGTGGAAGTATCACAACCCGGCCACCCAGCAGCTGGCCCAGTCGCTGCCGGAGAAGGATAAGCAGCTGTTTAACTTCAACGTTGCCCAGCTGCAATGGCCGGAGTATTTCGTACAGCTGACGCAGGGCGTTCGGCGCTACCTCAACAACGAGCATCCCAAGTCGCTCGATGCCGCCCGCCGAAAGGACAAAGTCCTGTTCGTGGTAGATTTGGTGTTCCAGGTGCTGATCTTCGCCCTGCTGGGGTGGCTGCTCGCCACCGTGTTCGGCACCTCCAGCAGCTTGTTCTGGGTGTATGCCATCGGTAGCTATTTACTCTTCAGTCTGCTCTAAGACTGCATTCGAGGCTGCTCTGCAGTGCATTTGACCGATCGTCGGTCAAAGGGGGGGGTTGAAACAGCCGTATTAAATTGCATTTCACTATTACATTGCCCGTTGCCGAGCACGATCGTTCCACTTTTACTCTCTCTTGCCACACACACAAACACCCTCATACCTCATACTCACTCGTTAGATAGCGTACTTGTGTGTAGGAGTGCCGGAAAACAAAGACTCCGCATCATCCCGCAGCTTCCCGATCGGGGAAACGGGANGATTTTTCTTTTGCTAATGATATTTCTTCTAATGNGTAAGCTACTANGGAGAAGCGTACA]
[+] EMBL BX620447 [AGCAGCTGGCGGAGCATGAGGTTAACAAACACGCGGCCCAGTTCCCGTGCGCCATTATTCGGCCGAGCATGATTACCGGTGCCTGGAAGGAGCCTACCCCCGGCTGGACAATCTCCAAGAACGGGCCGCAAGGTTTCCTCATGGGTGCGTCCAAGGGCGTCATCCGCCGTCTGCCCGTCGGCGTGGATCTCGTCTACGACTACATCCCGGTCGATGCCGTCGTCAACCAGACGCTCGTACTTGGTTGGTACATGGGCACAAACAGCTTCCGCGAGGTGAAAGTGTTCCACTGTACGTCCAGCACATCGAACCCGTTCAAGTGGAACTCGGTCGTTGATCATGTGAACGATCATCTGCACAAGTACCCGCTGAAATCGGCCATCTGGTACCCACGGTTGAAGTTCGTCTCGAGCCTATGGGTGTACAAGCTGGCCTCGATCTTTGTGCACATACTGCCCGCACTGGTGCTGGACCTGCTGCTGCGGGTGACCGGCGGTCGGCC ]
[+] EMBL BX621357 [ aggCACGGTTGAAGTTCGTCTCGAGCCTATGGGTGTACAAGCTGGCCTCGATCTTTGTGCACATACTGCCCGCACTGGTGCTGGACCTGCTGCTGCGGGTGACCGGCGGTCGGCCCATGCTGATGCGCCTCCACACGAACGTGTGGGAGTCGCTGAACCGGCTGGAGAAGTTCATCTTCACCGAGTGGAAGTATCACAACCCGGCCACCCAGCAGCTGGCCCAGTCGCTGCCGGAGAAGGATAAGCAGCTGTTTAACTTCAACGTTGCCCAGCTGCAATGGCCGGAGTATTTCGTACAGCTGACGCAGGGCGTTCGGCGCTACCTCAACAACGAGCATCCCAAGTCGCTCGATGCCGCCCGCCGAAAGGACAAAGTCCTGTTCGTGGTAGATTTGGTGTTCCAGGTGCTGATCTTCGCCCTGCTGGGGTGGCTGCTCGCCACCGTGTTCGGCACCTCCAGCAGCTTGTTCTGGGTGTATGCCATCGGTAGCTATTTACTCTTCAGTCTGCTCTAAGACTGCATTCGAGGCTGCTCTGCAGTGCATTTGACCGATCGTCGGTCAAAGGGGGGGGTTGAAACAGCCGTATTAAATTGCATTTCACTATTACATTGCCCGTTGCCGAGCACGATCGTTCCACTTTTACTCTCTCTTGCCACACACACAAACACCCTCATACCTCATACTCACTCGTTAGATAGCGTACTTGTGTGTAGGAGTGCCGGAAAACAAAGACTCCGCATCATCCCGCAGCTTCCCGATCGGGGAAACGGGANGATTTTTCTTTTGCTAATGATATTTCTTCTAATGNGTAAGCTACTANGGAGAAGCGTACA]
consensusID : consensus_3900#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 535 fasta sequence
[CCGAGGTTAAATCGGCATCTGGTACCCACGGTTGAATGTTCGTCTTGAGCCTATTGGTGTACAAGCTGGCCTCGATCTTTGTGCACATACTGCCCGCACTGGTGCTGGACCTGCTGCTAGCGGGTGACCGGCGGTCGGCCATGCTGATGCGCCGCAACACGAACGTGTGGGAGTCGCTGAACCGGCTGGAGAAGTTCATCTTCACCGAGTGGAAGTATCACAAACCGGCACCCAGCAGCTGGCCCAGTCGCTGCCGGAGAAGGATAAGCAGCTGTTTAACTTCAAACGTTTGCCCAGCATGCCAATTGNGCCTGGAGGTATTTTCAGTACAGCTGACGCCAGATGGCTGTTCGGCCGCTACTCAACAACGGAGGCATCCCAAGTCGNCTCGGATGCCTAGACACNGACGAAAAAGGGACAAAAGNTCNCATGTNNACAGATGNGTAGCAATANAGGGNTGGTTACCAGAGACTGCTGAATCTTTTCCNAGACCCGAACTGGGANNANATGGACCTGGCATCGACCAACCGGTGNT]
[+] EMBL AL695666 [CCGAGGTTAAATCGGCATCTGGTACCCACGGTTGAATGTTCGTCTTGAGCCTATTGGTGTACAAGCTGGCCTCGATCTTTGTGCACATACTGCCCGCACTGGTGCTGGACCTGCTGCTAGCGGGTGACCGGCGGTCGGCCATGCTGATGCGCCGCAACACGAACGTGTGGGAGTCGCTGAACCGGCTGGAGAAGTTCATCTTCACCGAGTGGAAGTATCACAAACCGGCACCCAGCAGCTGGCCCAGTCGCTGCCGGAGAAGGATAAGCAGCTGTTTAACTTCAAACGTTTGCCCAGCATGCCAATTGNGCCTGGAGGTATTTTCAGTACAGCTGACGCCAGATGGCTGTTCGGCCGCTACTCAACAACGGAGGCATCCCAAGTCGNCTCGGATGCCTAGACACNGACGAAAAAGGGACAAAAGNTCNCATGTNNACAGATGNGTAGCAATANAGGGNTGGTTACCAGAGACTGCTGAATCTTTTCCNAGACCCGAACTGGGANNANATGGACCTGGCATCGACCAACCGGTGNT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3900#0 AGCAGCTGGCGGAGCATGAGGTTAACAAACACGCGGCCCAGTTCCCGTGCGCCATTATTC 60
consensus_3900#1 ------------------------------------------------------------
consensus_3900#0 GGCCGAGCATGATTACCGGTGCCTGGAAGGAGCCTACCCCCGGCTGGACAATCTCCAAGA 120
consensus_3900#1 ------------------------------------------------------------
consensus_3900#0 ACGGGCCGCAAGGTTTCCTCATGGGTGCGTCCAAGGGCGTCATCCGCCGTCTGCCCGTCG 180
consensus_3900#1 ------------------------------------------------------------
consensus_3900#0 GCGTGGATCTCGTCTACGACTACATCCCGGTCGATGCCGTCGTCAACCAGACGCTCGTAC 240
consensus_3900#1 ------------------------------------------------------------
consensus_3900#0 TTGGTTGGTACATGGGCACAAACAGCTTCCGCGAGGTGAAAGTGTTCCACTGTACGTCCA 300
consensus_3900#1 ------------------------------------------------------------
consensus_3900#0 GCACATCGAACCCGTTCAAGTGGAACTCGGTCGTTGATCATGTGAACGATCATCTGCACA 360
consensus_3900#1 ------------------------------------------------------------
consensus_3900#0 AGTACCCGCTGAAATCGGCCATCTGGTACCCACGGTTGAA-GTTCGTCTCGAGCCTATGG 419
consensus_3900#1 ---CCGAGGTTAAATCGGC-ATCTGGTACCCACGGTTGAATGTTCGTCTTGAGCCTATTG 56
* * * ******** ******************** ******** ******** *
consensus_3900#0 GTGTACAAGCTGGCCTCGATCTTTGTGCACATACTGCCCGCACTGGTGCTGGACCTGCTG 479
consensus_3900#1 GTGTACAAGCTGGCCTCGATCTTTGTGCACATACTGCCCGCACTGGTGCTGGACCTGCTG 116
************************************************************
consensus_3900#0 CT-GCGGGTGACCGGCGGTCGGCCCATGCTGATGCGCCTCCACACGAACGTGTGGGAGTC 538
consensus_3900#1 CTAGCGGGTGACCGGCGGTCGGCC-ATGCTGATGCGCCGCAACACGAACGTGTGGGAGTC 175
** ********************* ************* * *******************
consensus_3900#0 GCTGAACCGGCTGGAGAAGTTCATCTTCACCGAGTGGAAGTATCACAACCCGGCCACCCA 598
consensus_3900#1 GCTGAACCGGCTGGAGAAGTTCATCTTCACCGAGTGGAAGTATCACAAACCGGC-ACCCA 234
************************************************ ***** *****
consensus_3900#0 GCAGCTGGCCCAGTCGCTGCCGGAGAAGGATAAGCAGCTGTTTAACTTCAA-CGTT-GCC 656
consensus_3900#1 GCAGCTGGCCCAGTCGCTGCCGGAGAAGGATAAGCAGCTGTTTAACTTCAAACGTTTGCC 294
*************************************************** **** ***
consensus_3900#0 CAGC-TGCAA----TGGCCGGAG-TATTTC--GTACAGCTGACGCAGGGCG----TTCGG 704
consensus_3900#1 CAGCATGCCAATTGNGCCTGGAGGTATTTTCAGTACAGCTGACGCCAGATGGCTGTTCGG 354
**** *** * * * **** ***** ************* * * *****
consensus_3900#0 CGCTACCTCAACAACGA--GCATCCCAAGTCGCTC--GATGCCGCCCGCCGAAAGGACAA 760
consensus_3900#1 CCGCTACTCAACAACGGAGGCATCCCAAGTCGNCTCGGATGCCTAGACACNGACGAAAAA 414
* ********** ************* ****** * * * * **
consensus_3900#0 AGTCCTGTTCGTGGTAGATTTGGTGTTC-CAGGTGCTGATCTTCGCCCTGCTGGGGTGGC 819
consensus_3900#1 GGGAC-------AAAAGNTCNCATGTNNACAGATGNG-----TAGCAATANAGGGNTGGT 462
* * ** * *** *** ** * ** * *** ***
consensus_3900#0 TGCTCGCCACCGTGTTCGGCACCTCCAGCAGCTTGTTCTGGGTGTATGCCATCGGTAGCT 879
consensus_3900#1 TACCAGAGAC--TGCTGAATCTTTTCCNAGACCCGAACTGGGANNANATGGAC--CTGGC 518
* * * ** ** * * * * * ***** * * *
consensus_3900#0 ATTTACTCTTCAGTCTGCTCTAAGACTGCATTCGAGGCTGCTCTGCAGTGCATTTGACCG 939
consensus_3900#1 ATCGACCAACCGGTGNT------------------------------------------- 535
** ** * **
consensus_3900#0 ATCGTCGGTCAAAGGGGGGGGTTGAAACAGCCGTATTAAATTGCATTTCACTATTACATT 999
consensus_3900#1 ------------------------------------------------------------
consensus_3900#0 GCCCGTTGCCGAGCACGATCGTTCCACTTTTACTCTCTCTTGCCACACACACAAACACCC 1059
consensus_3900#1 ------------------------------------------------------------
consensus_3900#0 TCATACCTCATACTCACTCGTTAGATAGCGTACTTGTGTGTAGGAGTGCCGGAAAACAAA 1119
consensus_3900#1 ------------------------------------------------------------
consensus_3900#0 GACTCCGCATCATCCCGCAGCTTCCCGATCGGGGAAACGGGANGATTTTTCTTTTGCTAA 1179
consensus_3900#1 ------------------------------------------------------------
consensus_3900#0 TGATATTTCTTCTAATGNGTAAGCTACTANGGAGAAGCGTACA 1222
consensus_3900#1 -------------------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||