cluster # 3901

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Anopheles gambiae
cluster # 3901 cluster # 3901 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3901#0 length = 673 sequences # 2

consensus_3901#1 length = 620 sequences # 1

consensusID : consensus_3901#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 673
fasta sequence

                              [CCGATTTCTCGGACCACGCTGGGCAGAACAGTTTCATTTTTTGTGCTAAAACAATGTATGATTTAAAAATCTATTCCTCCTACATTGTTGCCGCCATCAAGGATAAGATAGTGTTCTTTTCCACGGATGGAGCTGTGCTGCACACGATCACCGTTGAGCAGAAAGCGCCTGCTAAGGATACGGATGCCGCTAACGAACCGAACGGGAATCAAACACAACCAACCCCGGCTAACGTTGTAACGTTCGAGTATTGTCCAACTGCGAAGGTGTTGGCCGTTTCTCTGAGCGATAAGACGTGGCGACGCTACCAATTACGGGAAGAAGATGGAGGGAAGCTATGTTCGGCCCCATTGGGCGAGGACATTACCACGGCGAGGACGATCGTCAGCATGAAGTTCGTCCCAAAGCATGGCGTTCTGTTCGGCACGGACAAGAGCGATTGTTTCGAGTTTGGTGCGTTGGACAAAACGTCGGAACCGCAACCGAAGTGGATTCTTGGACACATGAGTCAAATATTGGCGCTTGCCGTTAGCGATGATGAGCGGTTTATTGTCACGAGCGATCGTGATGAGAAAATAAAGGTCAGCGCGTACCCCGACTGCCACAATATAAAAATGTTTTTGTTTGGGGCACACGGAGTACGTGGGGAAGGGGATTGAGATCATTCCCAGCG]

[+] EMBL BM595801             [CCGATTTCTCGGACCACGCTGGGCAGAACAGTTTCATTTTTTGTGCTAAAACAATGTATGATTTAAAAATCTATTCCTCCTACATTGTTGCCGCCATCAAGGATAAGATAGTGTTCTTTTCCACGGATGGAGCTGTGCTGCACACGATCACCGTTGAGCAGAAAGCGCCTGCTAAGGATACGGATGCCGCTAACGAACCGAACGGGAATCAAACACAACCAACCCCGGCTAACGTTGTAACGTTCGAGTATTGTCCAACTGCGAAGGTGTTGGCCGTTTCTCTGAGCGATAAGACGTGGCGACGCTACCAATTACGGGAAGAAGATGGAGGGAAGCTATGTTCGGCCCCATTGGGCGAGGACATTACCACGGCGAGGACGATCGTCAGCATGAAGTTCGTCCCAAAGCATGGCGTTCTGTTCGGCACGGACAAGAGCGATTGTTTCGAGTTTGGTGCGTTGGACAAAACGTCGGAACCGCAACCGAAGTGGATTCTTGGACACATGAGTCAAATATTGGCGCTTGCCGTTAGCGATGATGAGCGGTTTATTGTCACGAGCGATCGTGATGAGAAAATAAAGGTCAGCGCGTACCCCGACTGCCACAATATAAAAATGTTTTTGTTTGGGGCACACGGAGTACGTGGGGAAGGGGATTGAGATCATTC      ]
[+] EMBL BM650968             [                   ccGGCAGAATAGTTTAGGTTTTTGTGCTAAAAAAATGTATGATTTAAAAATCTATTCCTCCTACATTGTTGCCGCCATCAAGGATAAGATAGTGTTCTTTTCCACGGATGGAGCTGTGCTGCACACGATCACCGTCGAGCAGAAAGCGCCTGTTAAGGATACGGATGCCGGCAACGAACCGAACGGGAATCAAACACAACCAACCCCGGCCAACGTTGTAACGTTCGAGTATTGTCCAACTGCGAAGGTGTTGGCCGTTTCTCTGAGCGATAAGACGTGGCGACGCTACCAATTACGGGAAGAAGATGGAGGGAAGCTATGTTCGGCCCCATTGGGCGAGGACATTACCACGGCGAGGACGATCGTGAGCATGAAGTTTGTCCCAAAGCATGGCGTTCTGTTCGGCACGGACAAGAGCGATTGTTTCGAGTTTGGTGCGTTGGACAAAACGTCGGAACCGCAACCGAAGTGGATTCTTGGACACATGAGTCAAATATTGGCGCTTGCCGTTAGCGATGATGAGCGGTTTATTGTCACGAGCGATCGTGATGAGAAAATAAAGGTCAGCGCGTACCCCGACTGCCACAATAT AGAATGTTTCTGTCTGGGGCACACGGAGTATGTGGG  A GGAATTGAGATCATTCCCAGCG]




>consensus_3901#0
CCGATTTCTCGGACCACGCTGGGCAGAACAGTTTCATTTTTTGTGCTAAAACAATGTATG
ATTTAAAAATCTATTCCTCCTACATTGTTGCCGCCATCAAGGATAAGATAGTGTTCTTTT
CCACGGATGGAGCTGTGCTGCACACGATCACCGTTGAGCAGAAAGCGCCTGCTAAGGATA
CGGATGCCGCTAACGAACCGAACGGGAATCAAACACAACCAACCCCGGCTAACGTTGTAA
CGTTCGAGTATTGTCCAACTGCGAAGGTGTTGGCCGTTTCTCTGAGCGATAAGACGTGGC
GACGCTACCAATTACGGGAAGAAGATGGAGGGAAGCTATGTTCGGCCCCATTGGGCGAGG
ACATTACCACGGCGAGGACGATCGTCAGCATGAAGTTCGTCCCAAAGCATGGCGTTCTGT
TCGGCACGGACAAGAGCGATTGTTTCGAGTTTGGTGCGTTGGACAAAACGTCGGAACCGC
AACCGAAGTGGATTCTTGGACACATGAGTCAAATATTGGCGCTTGCCGTTAGCGATGATG
AGCGGTTTATTGTCACGAGCGATCGTGATGAGAAAATAAAGGTCAGCGCGTACCCCGACT
GCCACAATATAAAAATGTTTTTGTTTGGGGCACACGGAGTACGTGGGGAAGGGGATTGAG
ATCATTCCCAGCG

consensusID : consensus_3901#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 620
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGAGGTTTTTGTGCTAAAAAAATGTATGATTTAAAAATCTATTCCTCCTACATTGTTGCCGCCATCAAGGATAAGATAGTGTTCTTTTCCACGGATGGAGCTGTGCTGCACACGATCACCGTCGAGCAGAAAGCGCCTGTTAAGGATACGGATGCCGGCAACGAACCGAACGGGAATCAAACACAACCAACCCCGGCCAACGTTGTAACGTTCGAGTATTGTCCAACTGCGAAGGTGTTGGCCGTTTCTCTGAGCGATAAGACGTGGCGACGCTACCAATTACGGGAAGAAGATGGAGGGAAGCTATGTTCGGCCCCATTGGGCGAGGACATTACCACGGCGAGGACGATCGTGAGCATGAAGTTTGTCCCAAAGCATGGCGTTCTGTTCGGCACGGACAAGAGCGATTGTTTCGAGTTTGGTGCGTTGGACAAAACGTCGGAACCGCAACCGAAGTGGATTCTTGGACACATGAGTCAAATATTGGCGCTTGCCGTTGAGCGATGATGAGCGGTTTATTGTCACGAGCGATCGTGATGAGAAAATAAAGGTCAGCGCGTACCCCGACTGCCACAATATAGAATGTTTCTGTCTG]

[+] EMBL BM585350             [CCGCCCACGCGTCCGCCCACGCGTCCGAGGTTTTTGTGCTAAAAAAATGTATGATTTAAAAATCTATTCCTCCTACATTGTTGCCGCCATCAAGGATAAGATAGTGTTCTTTTCCACGGATGGAGCTGTGCTGCACACGATCACCGTCGAGCAGAAAGCGCCTGTTAAGGATACGGATGCCGGCAACGAACCGAACGGGAATCAAACACAACCAACCCCGGCCAACGTTGTAACGTTCGAGTATTGTCCAACTGCGAAGGTGTTGGCCGTTTCTCTGAGCGATAAGACGTGGCGACGCTACCAATTACGGGAAGAAGATGGAGGGAAGCTATGTTCGGCCCCATTGGGCGAGGACATTACCACGGCGAGGACGATCGTGAGCATGAAGTTTGTCCCAAAGCATGGCGTTCTGTTCGGCACGGACAAGAGCGATTGTTTCGAGTTTGGTGCGTTGGACAAAACGTCGGAACCGCAACCGAAGTGGATTCTTGGACACATGAGTCAAATATTGGCGCTTGCCGTTGAGCGATGATGAGCGGTTTATTGTCACGAGCGATCGTGATGAGAAAATAAAGGTCAGCGCGTACCCCGACTGCCACAATATAGAATGTTTCTGTCTG]




>consensus_3901#1
CCGCCCACGCGTCCGCCCACGCGTCCGAGGTTTTTGTGCTAAAAAAATGTATGATTTAAA
AATCTATTCCTCCTACATTGTTGCCGCCATCAAGGATAAGATAGTGTTCTTTTCCACGGA
TGGAGCTGTGCTGCACACGATCACCGTCGAGCAGAAAGCGCCTGTTAAGGATACGGATGC
CGGCAACGAACCGAACGGGAATCAAACACAACCAACCCCGGCCAACGTTGTAACGTTCGA
GTATTGTCCAACTGCGAAGGTGTTGGCCGTTTCTCTGAGCGATAAGACGTGGCGACGCTA
CCAATTACGGGAAGAAGATGGAGGGAAGCTATGTTCGGCCCCATTGGGCGAGGACATTAC
CACGGCGAGGACGATCGTGAGCATGAAGTTTGTCCCAAAGCATGGCGTTCTGTTCGGCAC
GGACAAGAGCGATTGTTTCGAGTTTGGTGCGTTGGACAAAACGTCGGAACCGCAACCGAA
GTGGATTCTTGGACACATGAGTCAAATATTGGCGCTTGCCGTTGAGCGATGATGAGCGGT
TTATTGTCACGAGCGATCGTGATGAGAAAATAAAGGTCAGCGCGTACCCCGACTGCCACA
ATATAGAATGTTTCTGTCTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3901#0      CCGATTTCTCGGACCACGC--TGGGCAGAACAGTTTCATTTTTTGTGCTAAAACAATGTA 58
consensus_3901#1      ---------CCGCCCACGCGTCCGCCCACGCGTCCGAGGTTTTTGTGCTAAAAAAATGTA 51
                               * * ******    * *    *        ************** ******

consensus_3901#0      TGATTTAAAAATCTATTCCTCCTACATTGTTGCCGCCATCAAGGATAAGATAGTGTTCTT 118
consensus_3901#1      TGATTTAAAAATCTATTCCTCCTACATTGTTGCCGCCATCAAGGATAAGATAGTGTTCTT 111
                      ************************************************************

consensus_3901#0      TTCCACGGATGGAGCTGTGCTGCACACGATCACCGTTGAGCAGAAAGCGCCTGCTAAGGA 178
consensus_3901#1      TTCCACGGATGGAGCTGTGCTGCACACGATCACCGTCGAGCAGAAAGCGCCTGTTAAGGA 171
                      ************************************ **************** ******

consensus_3901#0      TACGGATGCCGCTAACGAACCGAACGGGAATCAAACACAACCAACCCCGGCTAACGTTGT 238
consensus_3901#1      TACGGATGCCGGCAACGAACCGAACGGGAATCAAACACAACCAACCCCGGCCAACGTTGT 231
                      ***********  ************************************** ********

consensus_3901#0      AACGTTCGAGTATTGTCCAACTGCGAAGGTGTTGGCCGTTTCTCTGAGCGATAAGACGTG 298
consensus_3901#1      AACGTTCGAGTATTGTCCAACTGCGAAGGTGTTGGCCGTTTCTCTGAGCGATAAGACGTG 291
                      ************************************************************

consensus_3901#0      GCGACGCTACCAATTACGGGAAGAAGATGGAGGGAAGCTATGTTCGGCCCCATTGGGCGA 358
consensus_3901#1      GCGACGCTACCAATTACGGGAAGAAGATGGAGGGAAGCTATGTTCGGCCCCATTGGGCGA 351
                      ************************************************************

consensus_3901#0      GGACATTACCACGGCGAGGACGATCGTCAGCATGAAGTTCGTCCCAAAGCATGGCGTTCT 418
consensus_3901#1      GGACATTACCACGGCGAGGACGATCGTGAGCATGAAGTTTGTCCCAAAGCATGGCGTTCT 411
                      *************************** *********** ********************

consensus_3901#0      GTTCGGCACGGACAAGAGCGATTGTTTCGAGTTTGGTGCGTTGGACAAAACGTCGGAACC 478
consensus_3901#1      GTTCGGCACGGACAAGAGCGATTGTTTCGAGTTTGGTGCGTTGGACAAAACGTCGGAACC 471
                      ************************************************************

consensus_3901#0      GCAACCGAAGTGGATTCTTGGACACATGAGTCAAATATTGGCGCTTGCCGTT-AGCGATG 537
consensus_3901#1      GCAACCGAAGTGGATTCTTGGACACATGAGTCAAATATTGGCGCTTGCCGTTGAGCGATG 531
                      **************************************************** *******

consensus_3901#0      ATGAGCGGTTTATTGTCACGAGCGATCGTGATGAGAAAATAAAGGTCAGCGCGTACCCCG 597
consensus_3901#1      ATGAGCGGTTTATTGTCACGAGCGATCGTGATGAGAAAATAAAGGTCAGCGCGTACCCCG 591
                      ************************************************************

consensus_3901#0      ACTGCCACAATATAAAAATGTTTTTGTTTGGGGCACACGGAGTACGTGGGGAAGGGGATT 657
consensus_3901#1      ACTGCCACAATATAGAA-TGTTTCTGTCTG------------------------------ 620
                      ************** ** ***** *** **                              

consensus_3901#0      GAGATCATTCCCAGCG 673
consensus_3901#1      ----------------