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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3905#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 829 fasta sequence
[CCGCCCACGCGTCCGCCGCTGCTCCGCACGACGACGACGACAACGACGACGGGTGTGAATCATCATCATGCACCGTCCATAATTAAAATCGACGATCGATGCGCTCCGACGACGACAACGACGACGATGCCGGACAAGCGAAATTCAATTCCCGGCAGCGTTGTCGCTCTCATTGATACAGTGGGGAGTAGTAGCAGCGAGGAGAAGGTGGCGTTGAGTGCGGTCCACGATGCAGGCACTAAGCAGTGTGACGTCAGCCCGGTCGGAACCGCTCTGGCGGGGAATAATGTTGCTGCTGGAGCTGCTGCCACAGCGAAGGATCTGGTTACGATTGTTACCATATCGGGCACGATCGAACCGTCCGGCCGGTCGGTTTACACCAGCAACAGCAACAGCAGCAACCCACTGGCCGGTGCCAGTGGTGGTGCCACGTGTACATTATTAAACTCTAACTCGACGCCACTGCTGGCCACGGTTATACCGGTCAGCAAATTCGCAACCGCAACGGCATCATCACCGAGCGAAGCAGCCGCACCCGCAGCAGTGGTGGGTGGTAGTGAAGCGCCACTATAACCTGGTAATGCCACTTTTTAAGGGCGTAAAGGGGTGTTCGAGAGGAGGAGAGATAAAAAAAAACAAGTAGAAATGTGAACCACACAGTTACCGGAAAAGAGTGTACGGCTCTTTTATAGGGAGAGAGAGAGAGAGAGAGAGGAGCAGTTATCCCCCGTACCCTGATAAGCCATGAAAATCTAGTTTTTTTGGCGGGTGGTGTACAACCCCCCCTCCTCAATTCACACCACCCCCCCGAGTGTTGCATTGTGGCTGA]
[+] EMBL BM639469 [CCGCCCACGCGTCCGCCGCTGCTCCGCACGACGACGACGACAACGACGACGGGTGTGAATCATCATCATGCACCGTCCATAATTAAAATCGACGATCGATGCGCTCCGACGACGACAACGACGACGATGCCGGACAAGCGAAATTCAATTCCCGGCAGCGTTGTCGCTCTCATTGATACAGTGGGGAGTAGTAGCAGCGAGGAGAAGGTGGCGTTGAGTGCGGTCCACGATGCAGGCACTAAGCAGTGTGACGTCAGCCCGGTCGGAACCGCTCTGGCGGGGAATAATGTTGCTGCTGGAGCTGCTGCCACAGCGAAGGATCTGGTTACGATTGTTACCATATCGGGCACGATCGAACCGTCCGGCCGGTCGGTTTACACCAGCAACAGCAACAGCAGCAACCCACTGGCCGGTGCCAGTGGTGGTGCCACGTGTACATTATTAAACTCTAACTCGACGCCACTGCTGGCCACGGTTATACCGGTCAGCAAATTCGCAACCGCAACGGCATCATCACCGAGCGAAGCAGCCGCACCCGCAGCAGTGGTGGGTGGTAGTGAAGCGCCACTATAACCTGGTAATGCCACTTTTTAAGGGCGTAAAGGGGTGTTCGAGAGGAGGAGAGATAAAAAAAAACAAGTAGAAATGTGAACCACACAGTTACCGGAAAAGAGTGTACGGCTCTTTTATAGGGAGAGA ]
[+] EMBL BM600915 [ ccgTACGATTGTTACCATATCGGGCACGATCGAACCGTCCGGCCGGTCGGTTTACACCAGCAACAGCAACAGCAGCAACCCACTGGCCGGTGCCAGTGGTGGTGCCACGTGTACATTATTAAACTCTAACTCGACGCCACTGCTGGCCACGGTTATACCGGTCAGCAAATTCGCAACCGCAACGGCATCATCACCGAGCGAAGCAGCCGCACCCGCAGCAGTGGTGGGTGGTAGTGAAGCGCCACTATAACCTGGTAATGCCACTTTTTAAGGGCGTAAAGGGGTGTTCGAGAGGAGGAGAGATAAAAAAAAACAAGTAGAAATGTGAACCACACAGTTACCGGAAAAGAGTGTACGGC CCTTTATAGGGAGAGAGAGAGAGAGAGAGAGGAGCAGTTATCCCCCGTACCCTGATAAGCCATGAAAATCTAGTTTTTTTGGCGGGTGGTGTACAACCCCCCCTCCTCAATTCACACCACCCCCCCGAGTGTTGCATTGTGGCTGA]
consensusID : consensus_3905#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 679 fasta sequence
[CCGGGATCTGGTTACGATTGTTACCATATCGGGCACGATCGAACCGTCCGGCCGGTCGGTTTACACCAGCAACAGCAACAGCAGCAACCCACTGGCCGGTGCCAGTGGTGGTGCCACGTGTACATTATTAAACTCTAACTCGACGCCACTGCTGGCCACGGTTATACCGGTCAGCAAATCCGCAACCGCAACGGCATCATCACCCAGCGAAGCAGCAGCATCCGCAGCAGTGGTGGGTGGCAGTGAAGCGCCACTATAACCTGGTAATGCCACTACGGAAGGGCAGTAAAGGGGTGTTGTTTTCGAGGGGGAGAAAAAAAACAAGTAGAAATGTGAACCACACAGTTACCGGAAAAGAATGTACGGCGTTTGATAGAGAGAAAGAGAGAGGAGCAGTTATCCCCCGTACCCTGATAAGCCATGAAAATCTAGTTTTTTTTTGTGTGTGTACAACCCCCCCTTCATCATTCACACCACTCCCTGTGTGTTGCATTGTGGCTGACTTCCTGGTTTTGCGAACACCCTCAAACGCCCCCCCCCCCCTCAAAAAAGCTGCCATCCGATGGGGTTTGGTTGAAACTTTACCGAGCTGGTTCCGAGGGACAAGGCTGCTGTGGCTGGCCGGAAAGGGCGAAGATTAGGCGACCATTCCGGGAAACACCTCGGGGATGCTGCCGTT]
[+] EMBL BM617696 [CCGGGATCTGGTTACGATTGTTACCATATCGGGCACGATCGAACCGTCCGGCCGGTCGGTTTACACCAGCAACAGCAACAGCAGCAACCCACTGGCCGGTGCCAGTGGTGGTGCCACGTGTACATTATTAAACTCTAACTCGACGCCACTGCTGGCCACGGTTATACCGGTCAGCAAATCCGCAACCGCAACGGCATCATCACCCAGCGAAGCAGCAGCATCCGCAGCAGTGGTGGGTGGCAGTGAAGCGCCACTATAACCTGGTAATGCCACTACGGAAGGGCAGTAAAGGGGTGTTGTTTTCGAGGGGGAGAAAAAAAACAAGTAGAAATGTGAACCACACAGTTACCGGAAAAGAATGTACGGCGTTTGATAGAGAGAAAGAGAGAGGAGCAGTTATCCCCCGTACCCTGATAAGCCATGAAAATCTAGTTTTTTTTTGTGTGTGTACAACCCCCCCTTCATCATTCACACCACTCCCTGTGTGTTGCATTGTGGCTGACTTCCTGGTTTTGCGAACACCCTCAAACGCCCCCCCCCCCCTCAAAAAAGCTGCCATCCGATGGGGTTTGGTTGAAACTTTACCGAGCTGGTTCCGAGGGACAAGGCTGCTGTGGCTGGCCGGAAAGGGCGAAGATTAGGCGACCATTCCGGGAAACACCTCGGGGATGCTGCCGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3905#0 CCGCCCACGCGTCCGCCGCTGCTCCGCACGACGACGACGACAACGACGACGGGTGTGAAT 60
consensus_3905#1 ------------------------------------------------------------
consensus_3905#0 CATCATCATGCACCGTCCATAATTAAAATCGACGATCGATGCGCTCCGACGACGACAACG 120
consensus_3905#1 ------------------------------------------------------------
consensus_3905#0 ACGACGATGCCGGACAAGCGAAATTCAATTCCCGGCAGCGTTGTCGCTCTCATTGATACA 180
consensus_3905#1 ------------------------------------------------------------
consensus_3905#0 GTGGGGAGTAGTAGCAGCGAGGAGAAGGTGGCGTTGAGTGCGGTCCACGATGCAGGCACT 240
consensus_3905#1 ------------------------------------------------------------
consensus_3905#0 AAGCAGTGTGACGTCAGCCCGGTCGGAACCGCTCTGGCGGGGAATAATGTTGCTGCTGGA 300
consensus_3905#1 ------------------------------------------------------------
consensus_3905#0 GCTGCTGCCACAGCGAAGGATCTGGTTACGATTGTTACCATATCGGGCACGATCGAACCG 360
consensus_3905#1 --------------CCGGGATCTGGTTACGATTGTTACCATATCGGGCACGATCGAACCG 46
*******************************************
consensus_3905#0 TCCGGCCGGTCGGTTTACACCAGCAACAGCAACAGCAGCAACCCACTGGCCGGTGCCAGT 420
consensus_3905#1 TCCGGCCGGTCGGTTTACACCAGCAACAGCAACAGCAGCAACCCACTGGCCGGTGCCAGT 106
************************************************************
consensus_3905#0 GGTGGTGCCACGTGTACATTATTAAACTCTAACTCGACGCCACTGCTGGCCACGGTTATA 480
consensus_3905#1 GGTGGTGCCACGTGTACATTATTAAACTCTAACTCGACGCCACTGCTGGCCACGGTTATA 166
************************************************************
consensus_3905#0 CCGGTCAGCAAATTCGCAACCGCAACGGCATCATCACCGAGCGAAGCAGCCGCACCCGCA 540
consensus_3905#1 CCGGTCAGCAAATCCGCAACCGCAACGGCATCATCACCCAGCGAAGCAGCAGCATCCGCA 226
************* ************************ *********** *** *****
consensus_3905#0 GCAGTGGTGGGTGGTAGTGAAGCGCCACTATAACCTGGTAATGCCACTTTTTAAGGGC-G 599
consensus_3905#1 GCAGTGGTGGGTGGCAGTGAAGCGCCACTATAACCTGGTAATGCCACTACGGAAGGGCAG 286
************** ********************************* ****** *
consensus_3905#0 TAAAGGGGTGTTCGAGAGGAGGAGAGATAAAAAAAAACAAGTAGAAATGTGAACCACACA 659
consensus_3905#1 TAAAGGGGTGTTGTTTTCGAGGGGGA--GAAAAAAAACAAGTAGAAATGTGAACCACACA 344
************ **** * *******************************
consensus_3905#0 GTTACCGGAAAAGAGTGTACGGCTCTTTTATAGGGAGAGAGAGAGAGAGAGAGAGGAGCA 719
consensus_3905#1 GTTACCGGAAAAGAATGTACGGCGTTT---------GATAGAGAGAAAGAGAGAGGAGCA 395
************** ******** ** ** ******* *************
consensus_3905#0 GTTATCCCCCGTACCCTGATAAGCCATGAAAATCTAGTTTTTTTGGCGGGTGGTGTACAA 779
consensus_3905#1 GTTATCCCCCGTACCCTGATAAGCCATGAAAATCTAGTTTTTTTT-TGTGTG-TGTACAA 453
******************************************** * *** *******
consensus_3905#0 CCCCCCCTCCTCAATTCACACCACCCCCCCGAGTGTTGCATTGTGGCTGA---------- 829
consensus_3905#1 CCCCCCCTTCATCATTCACACCACTCCCT-GTGTGTTGCATTGTGGCTGACTTCCTGGTT 512
******** * *********** *** * ******************
consensus_3905#0 ------------------------------------------------------------
consensus_3905#1 TTGCGAACACCCTCAAACGCCCCCCCCCCCCTCAAAAAAGCTGCCATCCGATGGGGTTTG 572
consensus_3905#0 ------------------------------------------------------------
consensus_3905#1 GTTGAAACTTTACCGAGCTGGTTCCGAGGGACAAGGCTGCTGTGGCTGGCCGGAAAGGGC 632
consensus_3905#0 -----------------------------------------------
consensus_3905#1 GAAGATTAGGCGACCATTCCGGGAAACACCTCGGGGATGCTGCCGTT 679
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||