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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3906#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1046 fasta sequence
[NCAGTATTGCAATATGATAAATAATACGAATCGCATTAACATGAGACATGATTATAAAGATACAAGAGATAAAAGAAAATAGGTAAAACTAGTTCACAATAGATTTTTTTCGATAGCATTTTTACACAGTACCAAAATTTAACAAGATCAAAAAAGGTTTACAATTACTCGCGCTAAGTAAAAACAGGCCCAGTACATATAGATCAATAAATGCAAACGCAGAAAACATACACAAAAAAACGAACTTACATATGTCAGGAAACGTGCATAGCGAACATACATAAAGATCACATAAGATGAGATCACATAAAGATCACATAAAGAAAGGAGTGACCGCGCGTGATCGAAATACGCAGTNNAATGCAAAAGGGTACAATAATGAATAGTAGGCGCCGCTCTAGTTGCACGCCNAATCTTAATATTGAGACAGTATCCAAAGCAATCGTAAAATATGTATCAATGGAGCAACACCGTGAGAAAGAGAAGGAGGAAAGAGAGAGTAGATGTTTTCACCCTTTTGACGACAGTANNTCGCCGTCCCCCTCTTTGTCGTCGTCATCCCTTTCGTCATTAAATCGATATTCCCCGGAGGAGGGTGTAGGCGTGTTTAGATGTACGCACACACACCATTGATGCACCAGATCAACCGCGATCATCATTCCGTTTATGCGTCCCGTTCCGTGTTTCCCGACGCGTTCTAGAGTAGCTTATTGTTTTGCTTTGTTTTAAACGTTACACACGAGTGCGACAATTAGCGTATGCGCATCAGGGTGGATTGGGTGTAAGCAATATAGTTCAATATTGTTATTTCCTCATCACTCAGCGGTTTATGGTGTTTCCTAAGCACAATCGTGTAATCATTTCCTACCATTCATTATTATGTCGCGTGTACGCACCATTGGAACACAATAGGGATGTGGAGCGCAATCAAATGTCGCACAGCATTATTATCTGAATGTGATTTGTACTATATGTGGACAAACAGGACCGTGCACAGATTCAAAAAACACACAAATTTAGCCGTTGTCGTTCCGTTTTCCGTTAGT]
[+] EMBL BX624382 [NCAGTATTGCAATATGATAAATAATACGAATCGCATTAACATGAGACATGATTATAAAGATACAAGAGATAAAAGAAAATAGGTAAAACTAGTTCACAATAGATTTTTTTCGATAGCATTTTTACACAGTACCAAAATTTAACAAGATCAAAAAAGGTTTACAATTACTCGCGCTAAGTAAAAACAGGCCCAGTACATATAGATCAATAAATGCAAACGCAGAAAACATACACAAAAAAACGAACTTACATATGTCAGGAAACGTGCATAGCGAACATACATAAAGATCACATAAGATGAGATCACATAAAGATCACATAAAGAAAGGAGTGACCGCGCGTGATCGAAATACGCAGTNNAATGCAAAAGGGTACAATAATGAATAGTAGGCGCCGCTCTAGTTGCACGCCNAATCTTAATATTGAGACAGTATCCAAAGCAATCGTAAAATATGTATCAATGGAGCAACACCGTGAGAAAGAGAAGGAGGAAAGAGAGAGTAGATGTTTTCACCCTTTTGACGACAGTANNTCGC ]
[+] EMBL BX615158 [ TCAATGGAGCAACACGGTGAGAAAGAGAGGAAGGAAAGAGAGAGTAGATGTTTTCACCCTTTTGACGACAGTAGGTCGCCGTCCCCCTCTTTGTCGTCGTCATCCCTTTCGTCATTAAATCGATATTCCCCGGAGGAGGGTGTAGGCGTGTTTAGATGTACGCACACACACCATTGATGCACCAGATCAACCGCGATCATCATTCCGTTTATGCGTCCCGTTCCGTGTTTCCCGACGCGTTCTAGAGTAGCTTATTGTTTTGCTTTGTTTTAAACGTTACACACGAGTGCGACAATTAGCGTATGCGCATCAGGGTGGATTGGGTGTAAGCAATATAGTTCAATATTGTTATTTCCTCATCACTCAGCGGTTTATGGTGTTTCCTAAGCACAATCGTGTAATCATTTCCTACCATTCATTATTATGTCGCGTGTACGCACCATTGGAACACAATAGGGATGTGGAGCGCAATCAAATGTCGCACAGCATTATTATCTGAATGTGATTTGTACTATATGTGGACAAACAGGACCGTGCACAGATTCAAAAAACACACAAATTTAGCCGTTGTCGTTCCGTTTTCCGTTAGT]
consensusID : consensus_3906#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 894 fasta sequence
[CCAGGCTTATTACAAGATAAAAAAGGTTTACATTACTCGCGCTAAGTAAAAACAGGCCCAGTACATATAGATCAATAAATGCAAACGCAGAAAACATACACAAAAAAACGAACTTACATATGTCAGGAAACGTGCATAGCGAACATACATAAAGATCACATAAGATGAGATCACATAAAGATCACATAAAGAAAGGAGTGACCGCGCGTGATCGAAATACGCAGTTAAACTGCAAAAGGGTACAATAATGAATAGTAGGCGCCGCTCTAGTTGCACGCCAAATCTTAATATTGAGACAGTATCAAACAGCAATCGTAAAATATGTATCAATGGAGCAACACGGTGAGAAAGAGAGGANNGGACACACGAGAGAGTAGATGTNCTNTCACCCTTTTGACGACAGCTAGGTCGCCGCTCCCCCTCTTTGTCGCTCGCTCATCCCTTTCGCTCCATTAANACTCGACTATTCCCCCGGCAGCGAGCGGTGTAAGGACGTGTNAAAGATGTACCGCAACACACCACCATTGGATGCCACCAGCATCAACCGCGATCATCACTCTCCCGCTCACTGCNGTCCGCTTCCGCTGCTNCTCCCGGACGCCGCTTNCCTACCAGTTAGCCTTAATTTGTNCACGGCCTCNCCGCTCNTCTCAANACCGGTTCNNCCCCATCCCCGCCGGNNCGCTTNCCNCAACCCACCCTCTTACGCCCGCTANTTGCCGCCCACNTTCACCGGGCTGCGACTATAGGCGCTGCTACACGCCCCACCNANACNTCACGTTNCCCACCTACCTCCTGGTNCCTCTTCCCTTCCAATTCCCTCCNGCGGGCANACCTGGGCTGGCTCNCCCCTACCGCCACCATCACTCCGCTGGTTNACCTCCACATCTATCC]
[+] EMBL AL695736 [CCAGGCTTATTACAAGATAAAAAAGGTTTACATTACTCGCGCTAAGTAAAAACAGGCCCAGTACATATAGATCAATAAATGCAAACGCAGAAAACATACACAAAAAAACGAACTTACATATGTCAGGAAACGTGCATAGCGAACATACATAAAGATCACATAAGATGAGATCACATAAAGATCACATAAAGAAAGGAGTGACCGCGCGTGATCGAAATACGCAGTTAAACTGCAAAAGGGTACAATAATGAATAGTAGGCGCCGCTCTAGTTGCACGCCAAATCTTAATATTGAGACAGTATCAAACAGCAATCGTAAAATATGTATCAATGGAGCAACACGGTGAGAAAGAGAGGANNGGACACACGAGAGAGTAGATGTNCTNTCACCCTTTTGACGACAGCTAGGTCGCCGCTCCCCCTCTTTGTCGCTCGCTCATCCCTTTCGCTCCATTAANACTCGACTATTCCCCCGGCAGCGAGCGGTGTAAGGACGTGTNAAAGATGTACCGCAACACACCACCATTGGATGCCACCAGCATCAACCGCGATCATCACTCTCCCGCTCACTGCNGTCCGCTTCCGCTGCTNCTCCCGGACGCCGCTTNCCTACCAGTTAGCCTTAATTTGTNCACGGCCTCNCCGCTCNTCTCAANACCGGTTCNNCCCCATCCCCGCCGGNNCGCTTNCCNCAACCCACCCTCTTACGCCCGCTANTTGCCGCCCACNTTCACCGGGCTGCGACTATAGGCGCTGCTACACGCCCCACCNANACNTCACGTTNCCCACCTACCTCCTGGTNCCTCTTCCCTTCCAATTCCCTCCNGCGGGCANACCTGGGCTGGCTCNCCCCTACCGCCACCATCACTCCGCTGGTTNACCTCCACATCTATCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3906#0 NCAGTATTGCAATATGATAAATAATACGAATCGCATTAACATGAGACATGATTATAAAGA 60
consensus_3906#1 ------------------------------------------------------------
consensus_3906#0 TACAAGAGATAAAAGAAAATAGGTAAAACTAGTTCACAATAGATTTTTTTCGATAGCATT 120
consensus_3906#1 ------------------------------------------------------------
consensus_3906#0 TTTACACAGTACCAAAATT-TAACAAGATCAAAAAAGGTTTACAATTACTCGCGCTAAGT 179
consensus_3906#1 -----------CCAGGCTTATTACAAGAT-AAAAAAGGTTTACA-TTACTCGCGCTAAGT 47
*** ** * ******* ************** ***************
consensus_3906#0 AAAAACAGGCCCAGTACATATAGATCAATAAATGCAAACGCAGAAAACATACACAAAAAA 239
consensus_3906#1 AAAAACAGGCCCAGTACATATAGATCAATAAATGCAAACGCAGAAAACATACACAAAAAA 107
************************************************************
consensus_3906#0 ACGAACTTACATATGTCAGGAAACGTGCATAGCGAACATACATAAAGATCACATAAGATG 299
consensus_3906#1 ACGAACTTACATATGTCAGGAAACGTGCATAGCGAACATACATAAAGATCACATAAGATG 167
************************************************************
consensus_3906#0 AGATCACATAAAGATCACATAAAGAAAGGAGTGACCGCGCGTGATCGAAATACGCAGTNN 359
consensus_3906#1 AGATCACATAAAGATCACATAAAGAAAGGAGTGACCGCGCGTGATCGAAATACGCAGTTA 227
**********************************************************
consensus_3906#0 AA-TGCAAAAGGGTACAATAATGAATAGTAGGCGCCGCTCTAGTTGCACGCCNAATCTTA 418
consensus_3906#1 AACTGCAAAAGGGTACAATAATGAATAGTAGGCGCCGCTCTAGTTGCACGCCAAATCTTA 287
** ************************************************* *******
consensus_3906#0 ATATTGAGACAGTATCCAA-AGCAATCGTAAAATATGTATCAATGGAGCAACACCGTGAG 477
consensus_3906#1 ATATTGAGACAGTATCAAACAGCAATCGTAAAATATGTATCAATGGAGCAACACGGTGAG 347
**************** ** ********************************** *****
consensus_3906#0 AAAGAGAAGGAGGAAA----GAGAGAGTAGATGTT--TTCACCCTTTTGACGACAG-TAN 530
consensus_3906#1 AAAGAGAGGANNGGACACACGAGAGAGTAGATGTNCTNTCACCCTTTTGACGACAGCTAG 407
******* * * * ************** ****************** **
consensus_3906#0 NTCGCCG-TCCCCCTCTTTGTCG-TCG-TCATCCCTTTCGT--CATTAAA--TCGA-TAT 582
consensus_3906#1 GTCGCCGCTCCCCCTCTTTGTCGCTCGCTCATCCCTTTCGCTCCATTAANACTCGACTAT 467
****** *************** *** ************ ****** **** ***
consensus_3906#0 TCCCCGGA----GGAGGGTGTAGG--CGTGTTTA-GATGTAC-GCA-CACAC-ACCATTG 632
consensus_3906#1 TCCCCCGGCAGCGAGCGGTGTAAGGACGTGTNAAAGATGTACCGCAACACACCACCATTG 527
***** * * ****** * ***** * ******* *** ***** *******
consensus_3906#0 -ATGC-ACCAG-ATCAACCGCGATCATCATTCCGTTTATGCGTCCCGTTCCGTGTTTCCC 689
consensus_3906#1 GATGCCACCAGCATCAACCGCGATCATCACTCT-CCCGCTCACTGCNGTCCGCTTCCGCT 586
**** ***** ***************** ** * * **** * *
consensus_3906#0 GACGCGTTCTAGAGTAGCTTATTGTTTTGCTTTGTTTTAAACGTTACACACGAGTGCGAC 749
consensus_3906#1 GCTNCTCCCGGACGCCGCTTNCC-TACCAGTTAGCCTTAAT--TTGTNCACGGCCTCNCC 643
* * * * **** * ** * **** ** **** * *
consensus_3906#0 AATTAGCGTATGCGCATCAGGGTGGATTGGGTGTAAGCAATATAGTTCAATATTGTTATT 809
consensus_3906#1 GCTCNTC---------TCAANACCGGTTCNNCCCCATC-------CCCGCCGGNNCGCTT 687
* * *** * ** * * * **
consensus_3906#0 TCCTCATCACTCAGCGGTTTATGGTGTTTCCTAAGCACAATCGTGTAATCATTTCCTACC 869
consensus_3906#1 NCCNCA--ACCCACCCTCTTACGCCCGCTANTTGCCGCCCACNTTCACCGGGCTGCGACT 745
** ** ** ** * *** * * * * * * * * * * **
consensus_3906#0 ATTCATTATTATGTCGCGTGTACGCACCATTGGAACACAATAGGGATGTGGAGCGCAATC 929
consensus_3906#1 ATAGGCGCT---GCTACACGCCC-CACCNANACNTCACGTTNCCCACCTACCTCCTGGTN 801
** * * * * * **** *** * * * * *
consensus_3906#0 AAATGTCGCACAGCATTATTATCTGAATGT-GATTTGTACTATATGTGGACAAACAGGAC 988
consensus_3906#1 CCTCTTCCCTTCCAATTCCCTCCNGCGGGCANACCTGGGCTGGCTCNCCCCTACCGCCAC 861
** * *** * * * * ** ** * * * * **
consensus_3906#0 CGTGCACAGATTCAAAAAACACACAAATTTAGCCGTTGTCGTTCCGTTTTCCGTTAGT 1046
consensus_3906#1 CAT-CACTCCGCTGGTTNACCTCCACATCTATCC------------------------ 894
* * *** ** ** ** ** **
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||