These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3908#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 690 fasta sequence [AATCGCCCCGAGGTATTCAGCGTACCAATCTGGCCAACACGGTGCTGCTGCTGAAGTCGCTCGGGGTGAGCGATTTGCTGCAGTTCCACTTTATGGATCCACCGCCGCAGTGACAATATACTGAACTCGCTCTATCAGCTGTGGATTTTGGGTGCGCTGGATCATACCTGGGGCTGCTTACTGCCTGCTGTGGTGCTGCCAGATGGCCTGAGTTTCCTGCTCGATCCACCCCAGTGCCAGATGCTGATCGTGGCCAACTGAGATGGGATGTAGTTGAGTGAGATTTTAATCATTTGTATCGATGCTTTCCGTGCCCTCGATCTTCTACCTGTCCCAAGGGACGGGAGGAGGAAGCGGACAGTGTGCTGGGAAAAGTTCCAGGTGCCCGAATCCGACCACCTCACCTACCTGAACGTGTACCAGCAGTTGGAAGATGAACAAATACTCCGGCTCCTGGTGCAACGAACACTTCATCCACGTGNAAGGCAATGCGCAAGGTGCGGGCAGCGTGCGCCAGCAGCTCANTGACATCTACAGGCCCACGCNAGCACGCCCGGCCTAACCCGCCTTGACACCTCCGCTGCCGCGCCACCGCACTTGNCGCACCNCTGGCTGCNCCCACGTTGCCCTCTGCTCGCGCGCTACTTTCTACCCNGCCCGCGCCCCCCGGCTTGCCGCGGNCCTCGCCCC] [+] EMBL AL931824 [AATCGCCCCGAGGTATTCAGCGTACCAATCTGGCCAACACGGTGCTGCTGCTGAAGTCGCTCGGGGTGAGCGATTTGCTGCAGTTCCACTTTATGGATCCACCGCCGCAGTGACAATATACTGAACTCGCTCTATCAGCTGTGGATTTTGGGTGCGCTGGATCATACCTGGGGCTGCTTACTGCCTGCTGTGGTGCTGCCAGATGGCCTGAGTTTCCTGCTCGATCCACCCCAGTGCCAGATGCTGATCGTGGCCAACTGAGATGGGATGTAGTTGAGTGAGATTTTAATCATTTGTATCGATGCTTTCCGTGCCCTCGATCTTCTACCTGTCCCAAGGGACGGGAGGAGGAAGCGGACAGTGTGCTGGGAAAAGTTCCAGGTGCCCGAATCCGACCACCTCACCTACCTGAACGTGTACCAGCAGTTGGAAGATGAACAAATACTCCGGCTCCTGGTGCAACGAACACTTCATCCACGTGNAAGGCAATGCGCAAGGTGCGGGCAGCGTGCGCCAGCAGCTCANTGACATCTACAGGCCCACGCNAGCACGCCCGGCCTAACCCGCCTTGACACCTCCGCTGCCGCGCCACCGCACTTGNCGCACCNCTGGCTGCNCCCACGTTGCCCTCTGCTCGCGCGCTACTTTCTACCCNGCCCGCGCCCCCCGGCTTGCCGCGGNCCTCGCCCC] consensusID : consensus_3908#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 490 fasta sequence [CAAGAATCGCCCCGAGGNNGCGGGCGCAGGCGAAGCACTGGCAGCTGGGCGGCACGAAGCTGGGCAACATTATGGGCGTGGCAAAGGATAAGGACGAGCAGGATCCGGCCGACGGGGACGATGAGGCGTACGATTCGCGCAAGGATCGTGGCCAACGAGATGGGATGTAGTGAGGAGATTTTAATCATTGTATCGATGCTTTCCGTGCCCTCGATCTTCTATCGTCCCAAGGGACGGGAGGAGGAAGCGGACAGTGTGAGGGAAAAGTTCCAGGTGCCCGAATCCGACCACCTCACCTACCTGAACGTGTACCAGCAGTGGAAGATGAACAAATACTCCGGCTCCTGGTGCAACGAACACTTCATCCACGTGAAGGCAATGCGCAAGGTGCGGGAGGTGCGCCAGCAGCTCAAGGACATCTACAGCCAGCAGCAGCGGCTAACGCTGAAATCGTGCGGCACCGACTGGGACGTGGTGCGCAAGTGCATCT] [+] EMBL AL930375 [CAAGAATCGCCCCGAGGNNGCGGGCGCAGGCGAAGCACTGGCAGCTGGGCGGCACGAAGCTGGGCAACATTATGGGCGTGGCAAAGGATAAGGACGAGCAGGATCCGGCCGACGGGGACGATGAGGCGTACGATTCGCGCAAGGATCGTGGCCAACGAGATGGGATGTAGTGAGGAGATTTTAATCATTGTATCGATGCTTTCCGTGCCCTCGATCTTCTATCGTCCCAAGGGACGGGAGGAGGAAGCGGACAGTGTGAGGGAAAAGTTCCAGGTGCCCGAATCCGACCACCTCACCTACCTGAACGTGTACCAGCAGTGGAAGATGAACAAATACTCCGGCTCCTGGTGCAACGAACACTTCATCCACGTGAAGGCAATGCGCAAGGTGCGGGAGGTGCGCCAGCAGCTCAAGGACATCTACAGCCAGCAGCAGCGGCTAACGCTGAAATCGTGCGGCACCGACTGGGACGTGGTGCGCAAGTGCATCT] consensusID : consensus_3908#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 352 fasta sequence [CCAGGGTTACAGCGGTCGGGCCGTGCGGGCCGTACTGGGCCCGGCAAGCGTTCCTGGCTGTACACCTGAGCGGCAGTACAAGGACGAGCTGCTGCATCTGACCTGTGCCTGTGAGATTCAGCTGTACCAATCTGGCCAACACGGTGCTGCTGCTGAAGTCGCTCGGGGTGAGCGATTTGCTGCAGTTCCACTTTATGGATCCACCGGACGCAGTGACAATATACTTGAACTCGCTCTATCAGCTGTGGATATATCACTGGCGTTGCTGCTTGGACCATACCGGAGCTGCTTACTGCCTGCTGGGTGCTGCCAGATGGCCGAGTTTCCGNTCGATCCACCCAGTGCCAGATGC] [+] EMBL AL695763 [CCAGGGTTACAGCGGTCGGGCCGTGCGGGCCGTACTGGGCCCGGCAAGCGTTCCTGGCTGTACACCTGAGCGGCAGTACAAGGACGAGCTGCTGCATCTGACCTGTGCCTGTGAGATTCAGCTGTACCAATCTGGCCAACACGGTGCTGCTGCTGAAGTCGCTCGGGGTGAGCGATTTGCTGCAGTTCCACTTTATGGATCCACCGGACGCAGTGACAATATACTTGAACTCGCTCTATCAGCTGTGGATATATCACTGGCGTTGCTGCTTGGACCATACCGGAGCTGCTTACTGCCTGCTGGGTGCTGCCAGATGGCCGAGTTTCCGNTCGATCCACCCAGTGCCAGATGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3908#0 ------------------------------------------------------------ consensus_3908#2 ------------------------------------------------------------ consensus_3908#1 CAAGAATCGCCCCGAGGNNGCGGGCGCAGGCGAAGCACTGGCAGCTGGGCGGCACGAAGC 60 consensus_3908#0 ------------------------------------------------------------ consensus_3908#2 -------------------------------------CCAGGGTTACAGCGGTCGGGCCG 23 consensus_3908#1 TGGGCAACATTATGGGCGTGGCAAAGGATAAGGACGAGCAGGATC-CGGCCGACGGGGAC 119 consensus_3908#0 ------------------------------------------------------------ consensus_3908#2 TGCGGGCCGTACTGGGCCCGGCAAGCGTTCCTGGCTGTACACCTGAGCGGCAGTACAAGG 83 consensus_3908#1 GATGAGGCGTAC-GATTCGCGCAAG-GATCGTGGCCAACGAGATGGGATGTAGTGAGGAG 177 consensus_3908#0 -------------------AATC----GC-CCCGAGGTATTCAGC-GTACCAAT---CTG 32 consensus_3908#2 ACG--AGCTGCTGCATCTGACCT----GTGCCTGTGAGATTCAGCTGTACCAAT---CTG 134 consensus_3908#1 ATTTTAATCATTGTATCGATGCTTTCCGTGCCCTCGATCTTCTATCGTCCCAAGGGACGG 237 * ** * *** ** **** * * consensus_3908#0 GCCAACACGGTG--CTGC-TGCTGAAGTCGCTCGGGGTGAGCGATTTGCTGCAGTTCCAC 89 consensus_3908#2 GCCAACACGGTG--CTGC-TGCTGAAGTCGCTCGGGGTGAGCGATTTGCTGCAGTTCCAC 191 consensus_3908#1 GAGGAGGAAGCGGACAGTGTGAGGGAAAAGTTCCAGGTGCCCGAATC-CGACCACCTCAC 296 * * * * * * ** * * * ** **** *** * * * *** consensus_3908#0 TTTATGGATCCACCGC-CGCAGTGACA-ATATACT-GAACTC--GCTCTATCAGCTGTGG 144 consensus_3908#2 TTTATGGATCCACCGGACGCAGTGACA-ATATACTTGAACTC--GCTCTATCAGCTGTGG 248 consensus_3908#1 CTACCTGAACGTGTACCAGCAGTGGAAGATGAACAAATACTCCGGCTCCTGGTGCAACGA 356 * ** * ****** * ** ** **** **** ** * consensus_3908#0 ATTT-----TGGGTGCGCTG----GATCATACCTGGGGCTGCTTACTGCCTGCTGTGGTG 195 consensus_3908#2 ATATATCACTGGCGTTGCTGCTTGGACCATACC-GGAGCTGCTTACTGCCTGCTG-GGTG 306 consensus_3908#1 ACACTTCATCCACGTGAAGGCAATGCGCAAGGTGCGGGAGGTGCGCCAGCAGCTCAAGGA 416 * * * ** * * * * * *** * consensus_3908#0 CTGC--CAGATGGC--CTGAGTTTCCTGCTCGATCCACCCCAGTGCCAGATGCTGATCGT 251 consensus_3908#2 CTGC--CAGATGGC--C-GAGTTTCC-GNTCGATCCACCC-AGTGCCAGATGC------- 352 consensus_3908#1 CATCTACAGCCAGCAGCAGCGGCTAACGCTGAAATCGTGC-GGCACCGACTGGGACGTGG 475 * * *** ** * * * * * * * * * * ** ** consensus_3908#0 GGCCAACTGAGATGGGATGTAGTTGAGTGAGATTTTAATCATTTGTATCGATGCTTTCCG 311 consensus_3908#2 ------------------------------------------------------------ consensus_3908#1 TGCGCAAGTGCATCT--------------------------------------------- 490 consensus_3908#0 TGCCCTCGATCTTCTACCTGTCCCAAGGGACGGGAGGAGGAAGCGGACAGTGTGCTGGGA 371 consensus_3908#2 ------------------------------------------------------------ consensus_3908#1 ------------------------------------------------------------ consensus_3908#0 AAAGTTCCAGGTGCCCGAATCCGACCACCTCACCTACCTGAACGTGTACCAGCAGTTGGA 431 consensus_3908#2 ------------------------------------------------------------ consensus_3908#1 ------------------------------------------------------------ consensus_3908#0 AGATGAACAAATACTCCGGCTCCTGGTGCAACGAACACTTCATCCACGTGNAAGGCAATG 491 consensus_3908#2 ------------------------------------------------------------ consensus_3908#1 ------------------------------------------------------------ consensus_3908#0 CGCAAGGTGCGGGCAGCGTGCGCCAGCAGCTCANTGACATCTACAGGCCCACGCNAGCAC 551 consensus_3908#2 ------------------------------------------------------------ consensus_3908#1 ------------------------------------------------------------ consensus_3908#0 GCCCGGCCTAACCCGCCTTGACACCTCCGCTGCCGCGCCACCGCACTTGNCGCACCNCTG 611 consensus_3908#2 ------------------------------------------------------------ consensus_3908#1 ------------------------------------------------------------ consensus_3908#0 GCTGCNCCCACGTTGCCCTCTGCTCGCGCGCTACTTTCTACCCNGCCCGCGCCCCCCGGC 671 consensus_3908#2 ------------------------------------------------------------ consensus_3908#1 ------------------------------------------------------------ consensus_3908#0 TTGCCGCGGNCCTCGCCCC 690 consensus_3908#2 ------------------- consensus_3908#1 ------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||