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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3913#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 844 fasta sequence
[CCGATCGAATTTATATATGTTTGATGGTTCTCGTAGCCGAGCGAGAAGCAGCGACGAACACATACTAGAGACGGGCAGTCCAGTGCAGCCAAAGCGAAGCCAATCCACCAGCCATTACTGTTTGTTAATATATGTGTATATGAAATCATAAATATTGAAATATGAATGTTTAGTGACCGGAAATCCAAACCAAACCAACTTAAAA-------AAAAACAAAACCAGAGAAATTCCTAGTAAATCCTACCTCGATTGCACACTTTCCGCAATCGATGAGAGAAATTGTAAAATTCTCCTATAGGAAGAAACTAAGGTAGAGGGAGATAC--AGAGAGAGAGAAAGAGAAATGCTTTTTTCCATCTACTACTACTACTACTACTACTACTTCAACTACTACTTCTCTCATTCAATAATAGCTTCATTGGACAGTTTTTCCAAAAGAAATGCAACCCCTTTTCCCTCGCGTTTCCCTTTTATCCTAGTCGTAGAAATGTCCCCGCGTTGCTCTTAGCAGGTTTGTCTCCTACCCATCCGCTCCGTCAATCACCCAACCATCTTAGGCGCACTTCTCTCGTTGGTAGGTTAGTTTGCAACACTGTACACAATTGTGGCTTTTAGGGAGGCTTTCACCGGCAGACACAGGCAGGCTTTGGGCAGGGCTTTAAGGAACAGGAAAAACTCGGTATCGAATGTCGGTTCTGTATCGGACCGAGTCGATCGAGTTTTTCACGATACTATTACCGGCACTCTCGCTGTGACTATTCCTGGACGTTCGAATCGCGTTGCTGTTTTTCCACCGAATTATCTTGTAGCTGTACTTTTCTCGCGTTACAACGTTTCTCGCTAGCTCG]
[+] EMBL BM619981 [CCGATCGAATTTATATATGTTTGATGGTTCTCGTAGCCGAGCGAGAAGCAGCGACGAACACATACTAGAGACGGGCAGTCCAGTGCAGCCAAAGCGAAGCCAATCCACCAGCCATTACTGTTTGTTAATATATGTGTATATGAAATCATAAATATTGAAATATGAATGTTTAGTGACCGGAAATCCAAACCAAACCAACTTAAAA AAAAACAAAACCAGAGAAATTCCTAGTAAATCCTACCTCGATTGCACACTTTCCGCAATCGATGAGAGAAATTGTAAAATTCTCCTATAGGAAGAAACTAAGGTAGAGGGAGATAC AGAGAGAGAGAAAGAGAAATGCTTTTTTCCATCTACTACTACTACTACTACTACTACTTCAACTACTACTTCTCTCATTCAATAATAGCTTCATTGGACAGTTTTTCCAAAAGAAATGCAACCCCTTTTCCCTCGCGTTTCCCTTTTATCCTAGTCGTAGAAATGTCCCCGCGTTGCTCTTAGCAGGTTTGTCTCCTACCCATCCGCTCCGTCAATCACCCAACCATCTTAGGCGCACTTCTCTCGTTGGTAGGTTAGTTTGCAACACTGTACACAATTGTGGCTTTTAGGGAGGCTTTCACCGGCAGACACAGGCAGGCTTTGGGCAGGGCTTTAAGGAACAGGAAAAACTCGGTATCGAATGTCGGTT ]
[+] EMBL BM631749 [ ccgACCAAACCAACTTAAAAAAAAAACAAAAACAAAACCAGAGAAATTCCTAGTAAATCCTACCTCGATTGCACACTTTCCGCAATCGATGAGAGAAATTGTAAAATTCTCCTATAGGAAGAAACTAAGGTAGAGGGAGATACAGAGAGAGAGAGAAAGAGAAATGCTTTTTTCCATCTACTACTACTACTACTACTACTACTTCAACTACTACTTCTCTCATTCAATAATAGCTTCATTGGACAGTTTTTCCAAAAGAAATGCAACCCCTTTTCCCTCGCGTTTCCCTTTTATCCTAGTCGTAGAAATGTCCCCGCGTTGCTCTTAGCAGGTTTGTCTCCTACCCATCCGCTCCGTCAATCACCCAACCATCTTAGGCGCACTTCTCTCGTTGGTAGGTTAGTTTGCAACACTGTACACAATTGTGGCTTTTAGGGAGGCTTTCACCGGCAGACACAGGCAGGCTTTGGGCAGGGCTTTAAGGAACAGGAAAAACTCGGTATCGAATGTCGGTTCTGTATCGGACCGAGTCGATCGAGTTTTTCACGATACTATTACCGGCACTCTCGCTGTGACTATTCCTGGACGTTCGAATCGCGTTGCTGTTTTTCCACCGAATTATCTTGTAGCTGTACTTTTCTCGCGTTACAACGTTTCTCGCTAGCTCG]
consensusID : consensus_3913#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 783 fasta sequence
[GCAGATTGCCCAGGTTTATCAAACAAACAACTTACAAAAAAANACAAAAATAAAACCAGAGAAATTCCTAGTAAATCCTACCTCGATATGCACACTTTCCGCAATCGATGAGAGAAATTGTAAAATTCTCCTATAGGAAGAAACTAAGGTAGAGGGAGATACAGAGAGAGAGAAAGAGAAATGCTTTATTTCCATCTACTACTACTACTACTACTACTACTACTACTACTACTACTTCAACTACTACTTCTCTCATTCAACTAATAGCTTCATTTGGACAGCTTTTTCCAAAAGCAAATGCAACCCCTATTATACCCTACGCGCTTTCCCTATATNATACCTAGTACGGTAGGAAATGTCCCCGCCGTATGCTCTTAGCCAGGCTANNAGTACTCCTACCCATCCGCTCCGTCACATCACCCACACCATCCTCTAGGNGCGCACTTCNTCCTCGTTGGCTAAGGCTAAAGCTATANGCAACACTGGTACCAACCNNACTCTGCTGCGGCCTCTCNCCACGCGGGCACAGCGCTNTNCTCAACCCGGGCCGAGTACCCACCGATGGGCCCTGCTGCTCTTCTCTGGGGCGCNCNGCGGCCCTTNNTCTCCACGGGGACTCACTCTACGTGCCGCNCACACCCNTCCGCGNNNACTCCCGCGCCACGTTGGTTCCGGGCTCNCCNTCGGTNNNCTTCCGGGGCACCCCCGGNGCGCTTNCGGTANTTCGGCNGGGTTCTCCCTNCCNCGCCNNGNACTGAGTCGTTACTTTCACCCGGGCTCACC]
[+] EMBL AL695809 [GCAGATTGCCCAGGTTTATCAAACAAACAACTTACAAAAAAANACAAAAATAAAACCAGAGAAATTCCTAGTAAATCCTACCTCGATATGCACACTTTCCGCAATCGATGAGAGAAATTGTAAAATTCTCCTATAGGAAGAAACTAAGGTAGAGGGAGATACAGAGAGAGAGAAAGAGAAATGCTTTATTTCCATCTACTACTACTACTACTACTACTACTACTACTACTACTACTTCAACTACTACTTCTCTCATTCAACTAATAGCTTCATTTGGACAGCTTTTTCCAAAAGCAAATGCAACCCCTATTATACCCTACGCGCTTTCCCTATATNATACCTAGTACGGTAGGAAATGTCCCCGCCGTATGCTCTTAGCCAGGCTANNAGTACTCCTACCCATCCGCTCCGTCACATCACCCACACCATCCTCTAGGNGCGCACTTCNTCCTCGTTGGCTAAGGCTAAAGCTATANGCAACACTGGTACCAACCNNACTCTGCTGCGGCCTCTCNCCACGCGGGCACAGCGCTNTNCTCAACCCGGGCCGAGTACCCACCGATGGGCCCTGCTGCTCTTCTCTGGGGCGCNCNGCGGCCCTTNNTCTCCACGGGGACTCACTCTACGTGCCGCNCACACCCNTCCGCGNNNACTCCCGCGCCACGTTGGTTCCGGGCTCNCCNTCGGTNNNCTTCCGGGGCACCCCCGGNGCGCTTNCGGTANTTCGGCNGGGTTCTCCCTNCCNCGCCNNGNACTGAGTCGTTACTTTCACCCGGGCTCACC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3913#0 CCGATCGAATTTATATATGTTTGATGGTTCTCGTAGCCGAGCGAGAAGCAGCGACGAACA 60
consensus_3913#1 ------------------------------------------------------------
consensus_3913#0 CATACTAGAGACGGGCAGTCCAGTGCAGCCAAAGCGAAGCCAATCCACCAGCCATTACTG 120
consensus_3913#1 ------------------------------------------------------------
consensus_3913#0 TTTGTTAATATATGTGTATATGAAATCATAAATATTGAAATATGAATGTTTAGTGACCGG 180
consensus_3913#1 ----------------------------------GCAGATTGCCCAGGTTTATCAAACAA 26
* * * ***** * *
consensus_3913#0 AAATCCAAACCAAACCAACTTAAAAAAAAACAAAACCAGAGAAATTCCTAGTAAATCCTA 240
consensus_3913#1 ACAACTTA--CAAAAAAAN----ACAAAAATAAAACCAGAGAAATTCCTAGTAAATCCTA 80
* * * * **** ** * ***** *****************************
consensus_3913#0 CCTCGAT-TGCACACTTTCCGCAATCGATGAGAGAAATTGTAAAATTCTCCTATAGGAAG 299
consensus_3913#1 CCTCGATATGCACACTTTCCGCAATCGATGAGAGAAATTGTAAAATTCTCCTATAGGAAG 140
******* ****************************************************
consensus_3913#0 AAACTAAGGTAGAGGGAGATACAGAGAGAGAGAAAGAGAAATGCTTT-TTTCCATCTACT 358
consensus_3913#1 AAACTAAGGTAGAGGGAGATACAGAGAGAGAGAAAGAGAAATGCTTTATTTCCATCTACT 200
*********************************************** ************
consensus_3913#0 ACTACTACTACTACTACTACT---------------TCAACTACTACTTCTCTCATTCAA 403
consensus_3913#1 ACTACTACTACTACTACTACTACTACTACTACTACTTCAACTACTACTTCTCTCATTCAA 260
********************* ************************
consensus_3913#0 -TAATAGCTTCATT-GGACAG-TTTTTCCAAAAG-AAATGCAACCCCTTTT----CCCTC 455
consensus_3913#1 CTAATAGCTTCATTTGGACAGCTTTTTCCAAAAGCAAATGCAACCCCTATTATACCCTAC 320
************* ****** ************ ************* ** ** *
consensus_3913#0 GCGTTTCCCTTTTATC----CTAGTC--GTAG-AAATGTCCCCGC-GT-TGCTCTTAGC- 505
consensus_3913#1 GCGCTTTCCCTATATNATACCTAGTACGGTAGGAAATGTCCCCGCCGTATGCTCTTAGCC 380
*** ** ** * *** ***** **** ************ ** **********
consensus_3913#0 AGGTTTGT----CTCCTACCCATCCGCTCCGTCA-ATCACCCA-ACCATCTT----AGGC 555
consensus_3913#1 AGGCTANNAGTACTCCTACCCATCCGCTCCGTCACATCACCCACACCATCCTCTAGGNGC 440
*** * ********************** ******** ****** * **
consensus_3913#0 GCACTTCT--CTCGTTGGT--AGGTTAG-----TTTGCAACACTGTACACAATTGTGGCT 606
consensus_3913#1 GCACTTCNTCCTCGTTGGCTAAGGCTAAAGCTATANGCAACACTG-GTACCAACCNNACT 499
******* ******** *** ** * ********* ** * **
consensus_3913#0 TTTAGGGAGGCTTTCACCG-GCAGACACAG-GCAGGCTTTGGGCAGGGCTTTA-AGGAAC 663
consensus_3913#1 CTGCTGCGGCCTCTCNCCACGCGGGCACAGCGCTNTNCTCAACCCGGGCCGAGTACCCAC 559
* * * ** ** ** ** * ***** ** * * **** * **
consensus_3913#0 AGGAAAAACTCGGTA-TCGAATGTCGGTTCTGTATCGGACCGAGTCGATCG-AGTTTTTC 721
consensus_3913#1 CGATGGGCCCTGCTGCTCTTCTCTGGGGCGCNCNGCGGCCCTTNNTCTCCACGGGGACTC 619
* * * * ** * * ** *** ** * * **
consensus_3913#0 ACGATAC-TATTACCGGCACTCTCGCTGTGACTATTCCTGGAC-------GTTCGAATCG 773
consensus_3913#1 ACTCTACGTGCCGCNCACACCCNT-CCGCGNNNACTCCCGCGCCACGTTGGTTCCGGGCT 678
** *** * * *** * * * * * *** * * **** *
consensus_3913#0 CGTTGCTGTTTTTCCACCGAATTATCTTGTAGCTGTACTTTTCTCGCGTTACAACGTTTC 833
consensus_3913#1 CNCCNTCGGTNNNCTTCCGGGGCACCCCC--GGNGCGCTTNCGGTANTTCGGCNGGGTTC 736
* * * * *** * * * * *** * * ***
consensus_3913#0 TCGCTAGCTCG------------------------------------ 844
consensus_3913#1 TCCCTNCCNCGCCNNGNACTGAGTCGTTACTTTCACCCGGGCTCACC 783
** ** * **
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||