cluster # 3917

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Anopheles gambiae
cluster # 3917 cluster # 3917 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3917#0 length = 1122 sequences # 2

consensus_3917#1 length = 85 sequences # 1

consensusID : consensus_3917#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1122
fasta sequence

                              [CCGGCGCCCAGGAACCAGGCAGCCATCGCCACAACAGCAACAACAGCAACCCCAGTGAAACACCACGAACCAATAACGTTGGATCTACCTTGAAAGTATAGTCAGCGGTGACAGGATGTCGTCCTGTGCGTGTCCTATGACGAGCCCCGTCGGGGCCACGCTGGCCGCACTGTGCGGCGGTACGCAGTACATGCTGTTCATGGGACTGCTGGAGGTTTTCATAAGGTCACAGTGCGATCTGGAGGATCCGTGCGGACGGACCAAGGCAAAATCATCCCGAAATGTGGACTACGAGTACGACTTCATTGTGGTTGGCGGTGGATCGGGCGGTTCGGTAATCGCGTCCCGGCTCTCGGAGATCAAGAACTGGAAGGTGCTACTGATTGAAGCGGGACCGGATGAACCGACGGGCGCCCAGATCCCGTCCATGTTTCTGAACTATCTCGGCAGCGACATCGACTGGAAGTTTAACACCGAGCCGGAACAGTACGCCTGCCTGGGGTCGCCCGAGCAGCGCTGCTACTGGCCTCGGGGCAAGGTACTCGGCGGCACGTCCGTGCTGAACGGCATGATGTACATCCGGGGCAACCCGCAGGACTACGACGACTGGGACGCGATGGGTAATCCGGGCTGGAAGTGGAAGGACGTGCTGCCGTACTTCATGAAGTCGGAGGACAACCTGCAGATCAACGAGGTCGACTCGAAGTACCATTCGACGGGCGGCATGCTACCGGTTGGGCGGTTCCCGTACAACCCGCCGTTCTCGTACTCGGTGCTCAAGGGCGGCGAACAGCTCGGCTACCAGGTGCAGGATCTGAACGGTGCCAACACGACCGGCTTCATGATTGCGCAGATGACGAACAAGAACGGCATCCGGTACAGTGCGGCGCGTGCCTTCCTGCGCCCGGCCGTCAACCGGGCCAACCTGCACATCCTGCTCAACACGACCGTCACGAAGGTGCTGGTGCATCCGACCTCGAAGACGGCGCACGGTGTCGAGATTGTCGATGAGGATGGGCATATGCGCAAGATTCTGGTAAAGAANGAGGTGATCGTGAGCGGTGGAGCGGTCAACTCGCCCCAGATACTGCTGCTGAGCGGCATTGGACCGCGCGAACATCT]

[+] EMBL BM599601             [CCGGCGCCCAGGAACCAGGCAGCCATCGCCACAACAGCAACAACAGCAACCCCAGTGAAACACCACGAACCAATAACGTTGGATCTACCTTGAAAGTATAGTCAGCGGTGACAGGATGTCGTCCTGTGCGTGTCCTATGACGAGCCCCGTCGGGGCCACGCTGGCCGCACTGTGCGGCGGTACGCAGTACATGCTGTTCATGGGACTGCTGGAGGTTTTCATAAGGTCACAGTGCGATCTGGAGGATCCGTGCGGACGGACCAAGGCAAAATCATCCCGAAATGTGGACTACGAGTACGACTTCATTGTGGTTGGCGGTGGATCGGGCGGTTCGGTAATCGCGTCCCGGCTCTCGGAGATCAAGAACTGGAAGGTGCTACTGATTGAAGCGGGACCGGATGAACCGACGGGCGCCCAGATCCCGTCCATGTTTCTGAACTATCTCGGCAGCGACATCGACTGGAAGTTTAACACCGAGCCGGAACAGTACGCCTGCCTGGGGTCGCCCGAGCAGCGCTGCTACTGGCCTCGGGGCAAGGTACTCGGCGGCACGTCCGTGCTGAACGGCATGATGTACATCCGGGGCAACCCGCAGGACTACGACGACTGGGACGCGATGGGTAATCCGGGCTGGAAGTGGAAGGACGTGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BX621116             [                                                                                                                                                                                                                                                                                                                                                                                                                         GGCGCCCAGATCCCGTCCATGTTTCTGAACTATCTCGGCAGCGACATCGACTGGAAGTTTAACACCGAGCCGGAACAGTACGCCTGCCTGGGGTCGCCCGAGCAGCGCTGCTACTGGCCTCGGGGCAAGGTACTCGGCGGCACGTCCGTGCTGAACGGCATGATGTACATCCGGGGCAACCCGCAGGACTACGACGACTGGGACGCGATGGGCAATCCGGGCTGGAAGTGGAAGGACGTGCTGCCGTACTTCATGAAGTCGGAGGACAACCTGCAGATCAACGAGGTCGACTCGAAGTACCATTCGACGGGCGGCATGCTACCGGTTGGGCGGTTCCCGTACAACCCGCCGTTCTCGTACTCGGTGCTCAAGGGCGGCGAACAGCTCGGCTACCAGGTGCAGGATCTGAACGGTGCCAACACGACCGGCTTCATGATTGCGCAGATGACGAACAAGAACGGCATCCGGTACAGTGCGGCGCGTGCCTTCCTGCGCCCGGCCGTCAACCGGGCCAACCTGCACATCCTGCTCAACACGACCGTCACGAAGGTGCTGGTGCATCCGACCTCGAAGACGGCGCACGGTGTCGAGATTGTCGATGAGGATGGGCATATGCGCAAGATTCTGGTAAAGAANGAGGTGATCGTGAGCGGTGGAGCGGTCAACTCGCCCCAGATACTGCTGCTGAGCGGCATTGGACCGCGCGAACATCT]




>consensus_3917#0
CCGGCGCCCAGGAACCAGGCAGCCATCGCCACAACAGCAACAACAGCAACCCCAGTGAAA
CACCACGAACCAATAACGTTGGATCTACCTTGAAAGTATAGTCAGCGGTGACAGGATGTC
GTCCTGTGCGTGTCCTATGACGAGCCCCGTCGGGGCCACGCTGGCCGCACTGTGCGGCGG
TACGCAGTACATGCTGTTCATGGGACTGCTGGAGGTTTTCATAAGGTCACAGTGCGATCT
GGAGGATCCGTGCGGACGGACCAAGGCAAAATCATCCCGAAATGTGGACTACGAGTACGA
CTTCATTGTGGTTGGCGGTGGATCGGGCGGTTCGGTAATCGCGTCCCGGCTCTCGGAGAT
CAAGAACTGGAAGGTGCTACTGATTGAAGCGGGACCGGATGAACCGACGGGCGCCCAGAT
CCCGTCCATGTTTCTGAACTATCTCGGCAGCGACATCGACTGGAAGTTTAACACCGAGCC
GGAACAGTACGCCTGCCTGGGGTCGCCCGAGCAGCGCTGCTACTGGCCTCGGGGCAAGGT
ACTCGGCGGCACGTCCGTGCTGAACGGCATGATGTACATCCGGGGCAACCCGCAGGACTA
CGACGACTGGGACGCGATGGGTAATCCGGGCTGGAAGTGGAAGGACGTGCTGCCGTACTT
CATGAAGTCGGAGGACAACCTGCAGATCAACGAGGTCGACTCGAAGTACCATTCGACGGG
CGGCATGCTACCGGTTGGGCGGTTCCCGTACAACCCGCCGTTCTCGTACTCGGTGCTCAA
GGGCGGCGAACAGCTCGGCTACCAGGTGCAGGATCTGAACGGTGCCAACACGACCGGCTT
CATGATTGCGCAGATGACGAACAAGAACGGCATCCGGTACAGTGCGGCGCGTGCCTTCCT
GCGCCCGGCCGTCAACCGGGCCAACCTGCACATCCTGCTCAACACGACCGTCACGAAGGT
GCTGGTGCATCCGACCTCGAAGACGGCGCACGGTGTCGAGATTGTCGATGAGGATGGGCA
TATGCGCAAGATTCTGGTAAAGAANGAGGTGATCGTGAGCGGTGGAGCGGTCAACTCGCC
CCAGATACTGCTGCTGAGCGGCATTGGACCGCGCGAACATCT

consensusID : consensus_3917#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 85
fasta sequence

                              [CAGATCGCCCGCTTANGTGTGTGCATCCGACTCGAAGACGGCGCACGGTGTCGAGATTGTCGATGAGGATGGGCATATGCGCAAG]

[+] EMBL AL695939             [CAGATCGCCCGCTTANGTGTGTGCATCCGACTCGAAGACGGCGCACGGTGTCGAGATTGTCGATGAGGATGGGCATATGCGCAAG]




>consensus_3917#1
CAGATCGCCCGCTTANGTGTGTGCATCCGACTCGAAGACGGCGCACGGTGTCGAGATTGT
CGATGAGGATGGGCATATGCGCAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3917#0      CCGGCGCCCAGGAACCAGGCAGCCATCGCCACAACAGCAACAACAGCAACCCCAGTGAAA 60
consensus_3917#1      ------------------------------------------------------------
                                                                                  

consensus_3917#0      CACCACGAACCAATAACGTTGGATCTACCTTGAAAGTATAGTCAGCGGTGACAGGATGTC 120
consensus_3917#1      ------------------------------------------------------------
                                                                                  

consensus_3917#0      GTCCTGTGCGTGTCCTATGACGAGCCCCGTCGGGGCCACGCTGGCCGCACTGTGCGGCGG 180
consensus_3917#1      ------------------------------------------------------------
                                                                                  

consensus_3917#0      TACGCAGTACATGCTGTTCATGGGACTGCTGGAGGTTTTCATAAGGTCACAGTGCGATCT 240
consensus_3917#1      ------------------------------------------------------------
                                                                                  

consensus_3917#0      GGAGGATCCGTGCGGACGGACCAAGGCAAAATCATCCCGAAATGTGGACTACGAGTACGA 300
consensus_3917#1      ------------------------------------------------------------
                                                                                  

consensus_3917#0      CTTCATTGTGGTTGGCGGTGGATCGGGCGGTTCGGTAATCGCGTCCCGGCTCTCGGAGAT 360
consensus_3917#1      ------------------------------------------------------------
                                                                                  

consensus_3917#0      CAAGAACTGGAAGGTGCTACTGATTGAAGCGGGACCGGATGAACCGACGGGCGCCCAGAT 420
consensus_3917#1      ------------------------------------------------------------
                                                                                  

consensus_3917#0      CCCGTCCATGTTTCTGAACTATCTCGGCAGCGACATCGACTGGAAGTTTAACACCGAGCC 480
consensus_3917#1      ------------------------------------------------------------
                                                                                  

consensus_3917#0      GGAACAGTACGCCTGCCTGGGGTCGCCCGAGCAGCGCTGCTACTGGCCTCGGGGCAAGGT 540
consensus_3917#1      ------------------------------------------------------------
                                                                                  

consensus_3917#0      ACTCGGCGGCACGTCCGTGCTGAACGGCATGATGTACATCCGGGGCAACCCGCAGGACTA 600
consensus_3917#1      ------------------------------------------------------------
                                                                                  

consensus_3917#0      CGACGACTGGGACGCGATGGGTAATCCGGGCTGGAAGTGGAAGGACGTGCTGCCGTACTT 660
consensus_3917#1      ------------------------------------------------------------
                                                                                  

consensus_3917#0      CATGAAGTCGGAGGACAACCTGCAGATCAACGAGGTCGACTCGAAGTACCATTCGACGGG 720
consensus_3917#1      ------------------------------------------------------------
                                                                                  

consensus_3917#0      CGGCATGCTACCGGTTGGGCGGTTCCCGTACAACCCGCCGTTCTCGTACTCGGTGCTCAA 780
consensus_3917#1      ------------------------------------------------------------
                                                                                  

consensus_3917#0      GGGCGGCGAACAGCTCGGCTACCAGGTGCAGGATCTGAACGGTGCCAACACGACCGGCTT 840
consensus_3917#1      ------------------------------------------------------------
                                                                                  

consensus_3917#0      CATGATTGCGCAGATGACGAACAAGAACGGCATCCGGTACAGTGCGGCGCGTGCCTTCCT 900
consensus_3917#1      ------------------------------------------------------------
                                                                                  

consensus_3917#0      GCGCCCGGCCGTCAACCGGGCCAACCTGCACATCCTGCTCAACACGACCGTCACGAAGGT 960
consensus_3917#1      ------------------------------------------CAGATCGCCCGCTTANGT 18
                                                                **   *   * *  * **

consensus_3917#0      GCTGGTGCATCCGACCTCGAAGACGGCGCACGGTGTCGAGATTGTCGATGAGGATGGGCA 1020
consensus_3917#1      GT--GTGCATCCGAC-TCGAAGACGGCGCACGGTGTCGAGATTGTCGATGAGGATGGGCA 75
                      *   *********** ********************************************

consensus_3917#0      TATGCGCAAGATTCTGGTAAAGAANGAGGTGATCGTGAGCGGTGGAGCGGTCAACTCGCC 1080
consensus_3917#1      TATGCGCAAG-------------------------------------------------- 85
                      **********                                                  

consensus_3917#0      CCAGATACTGCTGCTGAGCGGCATTGGACCGCGCGAACATCT 1122
consensus_3917#1      ------------------------------------------