These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3922#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 772 fasta sequence [CGGCACTCGATGGCTGAATCTATGAGTGAAAGAGACAACCGACGATGAGAGTGCGTGGGCGTGCGATATGGAACTAGATGATAGGTAGGAATCTGAGTGATTAGGACATAATTATAAGGAAATTTGGAAGTACGTAGAGAAACCAGAAGCAAACCAGACAGACAAGGAAGCGTAGAGCAACAGACGGAAGAGGTTTTGGTGCTAGTTCGATTTGCTAGGACACTGACACCAGAGCCTCAATCGCGCGAATCGGCTGATTTAAGATCTTTTAAGAAGGGCCGCCAGTAACTGAATAGTAGTACCAGTCACCCATATATCGGCGGCTAGGTGTGACGGTCCTCTCTCGCGCGATTGAGTTACCGCCGTGAGGTGAACGCATTCCGCAGAAATGCTACGAAATACGTAGAACATGGGGTAGGACGATGGTAATATACATGGTATGGAAAAAAGTTCCAATGTATAGACGATGCAAAGATTAAAACAGCCGACTGGTCGTCATCACAGTACCGTGGGTGCTGGAAAGATCAGTTGTTACGCTCTGGCGTCCGGTGTTATGGCCACAGCAGGTGCATCTGTCGAAAGATATCAAACTCTTTTTGTTTGGCGCAGTTTTGAAGTGAGCCAGCGATATATACAAATATCAACNAGACGTCATTATTTGGCGCTTATGTTAGCCGGTGAATGGGAAGACGCTTTTATATTATCAGGGCTGAAACCAACAAGCGAAAAGGGAAACAATAGGTAAGCAGCGAAACTAAAGGAAACTGAAAGG] [+] EMBL BX626614 [CGGCACTCGATGGCTGAATCTATGAGTGAAAGAGACAACCGACGATGAGAGTGCGTGGGCGTGCGATATGGAACTAGATGATAGGTAGGAATCTGAGTGATTAGGACATAATTATAAGGAAATTTGGAAGTACGTAGAGAAACCAGAAGCAAACCAGACAGACAAGGAAGCGTAGAGCAACAGACGGAAGAGGTTTTGGTGCTAGTTCGATTTGCTAGGACACTGACACCAGAGCCTCAATCGCGCGAATCGGCTGATTTAAGATCTTTTAAGAAGGGCCGCCAGTAACTGAATAGTAGTACCAGTCACCCATATATCGGCGGCTAGGTGTGACGGTCCTCTCTCGCGCGATTGAGTTACCGCCGTGAGGTGAACGCATTCCGCAGAAATGCTACGAAATACGTAGAACATGGGGTAGGACGATGGTAATATACATGGTATGGAAAAAAGTTCCAATGTATAGACGATGCAAAGATTAAAACAGCCGACTGGTCGTCATCACAGTACCGTGGGTGCTGGAAAGATCAGTTGTTACGCTCTGGCGTCCGGTGTTATGGCCACAGCAGGTGCATCTGTCGAAAGATATCAAACTCTTTTTGTTTGGCGCAGTTTTGAAGTGAGCCAGCGATATATACAAATATCAACNAGACGTCATTATTTGGCGCTTATGTTAGCCGGTGAATGGGAAGACGCTTT ] [+] EMBL BX628993 [ TGGTGCTAGTTCGATTTGCTAGGACACTGACACCAGAGCCTCAATCGCGCGAATCGGCTGATTTAAGATCTTTTAAGAAGGGCCGCCAGTAACTGAATAGTAGTACCAGTCACCCATATATCGGCGGCTAGGTGTGACGGTCCTCTCTCGCGCGATTGAGTTACCGCCGTGAGGTGAACGCATTCCGCAGAAATGCTACGAAATACGTAGAACATGGGGTAGGACGATGGTAATATACATGGTATGGAAAAAAGTTCCAATGTATAGACGATGCAAAGATTAAAACAGCCGACTGGTCGTCATCACAGTACCGTGGGTGCTGGAAAGATCAGTTGTTACGCTCTGGCGTCCGGTGTTATGGCCACAGCAGGTGCATCTGTCGAAAGATATCAAACTCTTTTTGTTTGGCGCAGTTTTGAAGTGAGCCAGCGATATATACAAATATCAACAAGACGTCATTATTTGGCGCTTATGTTAGCCGGTGAATGGGAAGACGCTTTTATATTATCAGGGCTGAAACCAACAAGCGAAAAGGGAAACAATAGGTAAGCAGCGAAACTAAAGGAAACTGAAAGG] consensusID : consensus_3922#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 504 fasta sequence [CAGAATCCCCCGAGGTATGATAGGACATATTATAAGGAAATTGGAAGTACGTAGAGAAACAGAAGCAAACCAGACAGACAAGGAAGCGTAGAGCAACAGACGGAAGAGGTTTTGGTGCTAGTTCGATTTGCTAGGACACTGACACCAGAGCCTCAATCGCGCGAATCGGCTGATTTAAGATCTTTTAAGAAGGGCCGCCAGTAACTGAATAGTAGTACCAGTCACCCATATATCGGCGGCTAGGTGTGACGGTCCTCTCTCGCGCGATTGAGTTACCGCCGTGAGGTGAACGCATTCCGCAGAAATGCTACGAAATACGTAGAACATGGGGGTAGGACGATGGTAATATACATGGTATGGAAAACAAGTTCCAATGTATAGACGATGCAAANATTAAAACAGCCGACTGGTCGTCATCACAGTACCGTGGGTGCTGGAAAGATCAGTTGTTACCGCTCTGGCGTCCGGCTGTTATTGGGCCACCAGCCAGCGTGCATCTGTCGA] [+] EMBL AL696015 [CAGAATCCCCCGAGGTATGATAGGACATATTATAAGGAAATTGGAAGTACGTAGAGAAACAGAAGCAAACCAGACAGACAAGGAAGCGTAGAGCAACAGACGGAAGAGGTTTTGGTGCTAGTTCGATTTGCTAGGACACTGACACCAGAGCCTCAATCGCGCGAATCGGCTGATTTAAGATCTTTTAAGAAGGGCCGCCAGTAACTGAATAGTAGTACCAGTCACCCATATATCGGCGGCTAGGTGTGACGGTCCTCTCTCGCGCGATTGAGTTACCGCCGTGAGGTGAACGCATTCCGCAGAAATGCTACGAAATACGTAGAACATGGGGGTAGGACGATGGTAATATACATGGTATGGAAAACAAGTTCCAATGTATAGACGATGCAAANATTAAAACAGCCGACTGGTCGTCATCACAGTACCGTGGGTGCTGGAAAGATCAGTTGTTACCGCTCTGGCGTCCGGCTGTTATTGGGCCACCAGCCAGCGTGCATCTGTCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3922#0 CGGCACTCGATGGCTGAATCTATGAGTGAAAGAGACAACCGACGATGAGAGTGCGTGGGC 60 consensus_3922#1 ------------------------------------------------------------ consensus_3922#0 GTGCGATATGGAACTAGATGATAGGTAGGAATCTGAGTGATTAGGACATAATTATAAGGA 120 consensus_3922#1 ----------------CAGAATCCCCCGAGGTATGA-----TAGGACATA-TTATAAGGA 38 * ** * * *** ********* ********* consensus_3922#0 AATTTGGAAGTACGTAGAGAAACCAGAAGCAAACCAGACAGACAAGGAAGCGTAGAGCAA 180 consensus_3922#1 AATT-GGAAGTACGTAGAGAAAC-AGAAGCAAACCAGACAGACAAGGAAGCGTAGAGCAA 96 **** ****************** ************************************ consensus_3922#0 CAGACGGAAGAGGTTTTGGTGCTAGTTCGATTTGCTAGGACACTGACACCAGAGCCTCAA 240 consensus_3922#1 CAGACGGAAGAGGTTTTGGTGCTAGTTCGATTTGCTAGGACACTGACACCAGAGCCTCAA 156 ************************************************************ consensus_3922#0 TCGCGCGAATCGGCTGATTTAAGATCTTTTAAGAAGGGCCGCCAGTAACTGAATAGTAGT 300 consensus_3922#1 TCGCGCGAATCGGCTGATTTAAGATCTTTTAAGAAGGGCCGCCAGTAACTGAATAGTAGT 216 ************************************************************ consensus_3922#0 ACCAGTCACCCATATATCGGCGGCTAGGTGTGACGGTCCTCTCTCGCGCGATTGAGTTAC 360 consensus_3922#1 ACCAGTCACCCATATATCGGCGGCTAGGTGTGACGGTCCTCTCTCGCGCGATTGAGTTAC 276 ************************************************************ consensus_3922#0 CGCCGTGAGGTGAACGCATTCCGCAGAAATGCTACGAAATACGTAGAACATGGGG-TAGG 419 consensus_3922#1 CGCCGTGAGGTGAACGCATTCCGCAGAAATGCTACGAAATACGTAGAACATGGGGGTAGG 336 ******************************************************* **** consensus_3922#0 ACGATGGTAATATACATGGTATGGAAAA-AAGTTCCAATGTATAGACGATGCAAAGATTA 478 consensus_3922#1 ACGATGGTAATATACATGGTATGGAAAACAAGTTCCAATGTATAGACGATGCAAANATTA 396 **************************** ************************** **** consensus_3922#0 AAACAGCCGACTGGTCGTCATCACAGTACCGTGGGTGCTGGAAAGATCAGTTGTTAC-GC 537 consensus_3922#1 AAACAGCCGACTGGTCGTCATCACAGTACCGTGGGTGCTGGAAAGATCAGTTGTTACCGC 456 ********************************************************* ** consensus_3922#0 TCTGGCGTCCGG-TGTTAT--GGCCAC-AGCAGG--TGCATCTGTCGAAAGATATCAAAC 591 consensus_3922#1 TCTGGCGTCCGGCTGTTATTGGGCCACCAGCCAGCGTGCATCTGTCGA------------ 504 ************ ****** ****** *** * ************ consensus_3922#0 TCTTTTTGTTTGGCGCAGTTTTGAAGTGAGCCAGCGATATATACAAATATCAACNAGACG 651 consensus_3922#1 ------------------------------------------------------------ consensus_3922#0 TCATTATTTGGCGCTTATGTTAGCCGGTGAATGGGAAGACGCTTTTATATTATCAGGGCT 711 consensus_3922#1 ------------------------------------------------------------ consensus_3922#0 GAAACCAACAAGCGAAAAGGGAAACAATAGGTAAGCAGCGAAACTAAAGGAAACTGAAAG 771 consensus_3922#1 ------------------------------------------------------------ consensus_3922#0 G 772 consensus_3922#1 - |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||