cluster # 3923

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Anopheles gambiae
cluster # 3923 cluster # 3923 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3923#0 length = 772 sequences # 1

consensus_3923#1 length = 669 sequences # 1
consensus_3923#2 length = 353 sequences # 1

consensusID : consensus_3923#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 772
fasta sequence

                              [GCCCGAGGTTTCTGGTAGCACAAGCGATTCTAGCAATACGCTCGATGTCGGGTAGCGAAGAGGAGGAGGAGGAGGAGGAGCACGAGAAACAACCCATTTTTACCGATCGTGGTGGCGGTGACGCAGATTTGAACTTGGATAGTGATCCCAGTAGGTCAGATCATTTAAAGGTAAAACATTTGCACACCAAAGGAAGGCGGCGTTAAGTTGACCCGGGAAGCGTACAAGAATTTGGGCTCAAGGGCTAAAAAACGGAAAGGAGGAATACGGGACNACATCCCGAAANAAGGGAAACTGGCCTTGGCCCAAAACCAGAGAAACTATCCANACCGCCCCAAAAAAAGGAAACCAAAGCAGGCGGACAGAAGCAAAGCCGCCAANACACGAGGCGNACAACACGGCCCAACACACACCCACGCGACACCGGCAACTTCCAAAANAGGGACGCTTGGGACCTTTGGGAAAGCCGGGCCCNAACGGGGAACTAAACCCAACTTTGGAACCAGACGGGCCGAACCCTTAATCAACGGCAAAACAGGTGGGCGCCACAACCCGGCAAACAAACGCGCCGCCCGCGAAACAACGACACACCACCNAACGGAGNGGCCNCCNNNTNAGNGNGNNGCCCNCACCCCAACAACCCCCCANCCACANCNNCACACNCAAAAAAACAACAACAAAGGAGGGNGGAACAANAAAAACAAACANACNACACACNCCACCCCCCNCCCCCCCCCCGCGCCCCAAAACNACAAGNGGAGCGNGCCCCCCC]

[+] EMBL AL696018             [GCCCGAGGTTTCTGGTAGCACAAGCGATTCTAGCAATACGCTCGATGTCGGGTAGCGAAGAGGAGGAGGAGGAGGAGGAGCACGAGAAACAACCCATTTTTACCGATCGTGGTGGCGGTGACGCAGATTTGAACTTGGATAGTGATCCCAGTAGGTCAGATCATTTAAAGGTAAAACATTTGCACACCAAAGGAAGGCGGCGTTAAGTTGACCCGGGAAGCGTACAAGAATTTGGGCTCAAGGGCTAAAAAACGGAAAGGAGGAATACGGGACNACATCCCGAAANAAGGGAAACTGGCCTTGGCCCAAAACCAGAGAAACTATCCANACCGCCCCAAAAAAAGGAAACCAAAGCAGGCGGACAGAAGCAAAGCCGCCAANACACGAGGCGNACAACACGGCCCAACACACACCCACGCGACACCGGCAACTTCCAAAANAGGGACGCTTGGGACCTTTGGGAAAGCCGGGCCCNAACGGGGAACTAAACCCAACTTTGGAACCAGACGGGCCGAACCCTTAATCAACGGCAAAACAGGTGGGCGCCACAACCCGGCAAACAAACGCGCCGCCCGCGAAACAACGACACACCACCNAACGGAGNGGCCNCCNNNTNAGNGNGNNGCCCNCACCCCAACAACCCCCCANCCACANCNNCACACNCAAAAAAACAACAACAAAGGAGGGNGGAACAANAAAAACAAACANACNACACACNCCACCCCCCNCCCCCCCCCCGCGCCCCAAAACNACAAGNGGAGCGNGCCCCCCC]




>consensus_3923#0
GCCCGAGGTTTCTGGTAGCACAAGCGATTCTAGCAATACGCTCGATGTCGGGTAGCGAAG
AGGAGGAGGAGGAGGAGGAGCACGAGAAACAACCCATTTTTACCGATCGTGGTGGCGGTG
ACGCAGATTTGAACTTGGATAGTGATCCCAGTAGGTCAGATCATTTAAAGGTAAAACATT
TGCACACCAAAGGAAGGCGGCGTTAAGTTGACCCGGGAAGCGTACAAGAATTTGGGCTCA
AGGGCTAAAAAACGGAAAGGAGGAATACGGGACNACATCCCGAAANAAGGGAAACTGGCC
TTGGCCCAAAACCAGAGAAACTATCCANACCGCCCCAAAAAAAGGAAACCAAAGCAGGCG
GACAGAAGCAAAGCCGCCAANACACGAGGCGNACAACACGGCCCAACACACACCCACGCG
ACACCGGCAACTTCCAAAANAGGGACGCTTGGGACCTTTGGGAAAGCCGGGCCCNAACGG
GGAACTAAACCCAACTTTGGAACCAGACGGGCCGAACCCTTAATCAACGGCAAAACAGGT
GGGCGCCACAACCCGGCAAACAAACGCGCCGCCCGCGAAACAACGACACACCACCNAACG
GAGNGGCCNCCNNNTNAGNGNGNNGCCCNCACCCCAACAACCCCCCANCCACANCNNCAC
ACNCAAAAAAACAACAACAAAGGAGGGNGGAACAANAAAAACAAACANACNACACACNCC
ACCCCCCNCCCCCCCCCCGCGCCCCAAAACNACAAGNGGAGCGNGCCCCCCC

consensusID : consensus_3923#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 669
fasta sequence

                              [CCGGGACAAGCGATGAACGGTGCAGGAGCAACTAGCCTGGAATTACATTCGGAGAGTGCCTTAAAAATGGATGCTAGTTTTGAGGAAATTATAGGGCAAAAGGCAATCCAAGTTTCGGCGGAATGGGATTCTGAAGATAGCGACACAGCGGATGAAACTAACGATGCTTCTGAGTATGAAGATGTCGATTACGAATCGAAACTAGCGAACGTTTTCTCGAACATGTCACTCGCAACATCTCAGTCGAAACTATCGATGTACTCTACGGAAAGTAACGAAGCGTCGGCCGAAACTCACGGACAAGATGCCGAGCGTACCCTGGTGCAGAGTGACACCGAGGAAGAAGAAGATCCCGATGAACGTTACGATGAAGGGAATGGTTCCGGTAGCACAAGCGATTCTAGCAATACGCTCGATGCGGGTAGCGAAGAGGAGGAGGAGGAGGAGGAGCACGAGAAACAACCCATTTTTACCGATCGTGGTGGCGGTGACGCAGATTTGAACTTGGATAGTGATCCCAGTAGTCAGATCATTAAAGTAAACATTGCACACAAGAAGCGCGTTAGTGACCCGGAAGCGTACAAGAATTGGCTCAAGGCTAAAAACGAAGAGATACGGAAAAATCGCGAAAAGGAGCTGCTTGCCAAACAGGAACTTCAACGCCAAAAA]

[+] EMBL BM656622             [CCGGGACAAGCGATGAACGGTGCAGGAGCAACTAGCCTGGAATTACATTCGGAGAGTGCCTTAAAAATGGATGCTAGTTTTGAGGAAATTATAGGGCAAAAGGCAATCCAAGTTTCGGCGGAATGGGATTCTGAAGATAGCGACACAGCGGATGAAACTAACGATGCTTCTGAGTATGAAGATGTCGATTACGAATCGAAACTAGCGAACGTTTTCTCGAACATGTCACTCGCAACATCTCAGTCGAAACTATCGATGTACTCTACGGAAAGTAACGAAGCGTCGGCCGAAACTCACGGACAAGATGCCGAGCGTACCCTGGTGCAGAGTGACACCGAGGAAGAAGAAGATCCCGATGAACGTTACGATGAAGGGAATGGTTCCGGTAGCACAAGCGATTCTAGCAATACGCTCGATGCGGGTAGCGAAGAGGAGGAGGAGGAGGAGGAGCACGAGAAACAACCCATTTTTACCGATCGTGGTGGCGGTGACGCAGATTTGAACTTGGATAGTGATCCCAGTAGTCAGATCATTAAAGTAAACATTGCACACAAGAAGCGCGTTAGTGACCCGGAAGCGTACAAGAATTGGCTCAAGGCTAAAAACGAAGAGATACGGAAAAATCGCGAAAAGGAGCTGCTTGCCAAACAGGAACTTCAACGCCAAAAA]




>consensus_3923#1
CCGGGACAAGCGATGAACGGTGCAGGAGCAACTAGCCTGGAATTACATTCGGAGAGTGCC
TTAAAAATGGATGCTAGTTTTGAGGAAATTATAGGGCAAAAGGCAATCCAAGTTTCGGCG
GAATGGGATTCTGAAGATAGCGACACAGCGGATGAAACTAACGATGCTTCTGAGTATGAA
GATGTCGATTACGAATCGAAACTAGCGAACGTTTTCTCGAACATGTCACTCGCAACATCT
CAGTCGAAACTATCGATGTACTCTACGGAAAGTAACGAAGCGTCGGCCGAAACTCACGGA
CAAGATGCCGAGCGTACCCTGGTGCAGAGTGACACCGAGGAAGAAGAAGATCCCGATGAA
CGTTACGATGAAGGGAATGGTTCCGGTAGCACAAGCGATTCTAGCAATACGCTCGATGCG
GGTAGCGAAGAGGAGGAGGAGGAGGAGGAGCACGAGAAACAACCCATTTTTACCGATCGT
GGTGGCGGTGACGCAGATTTGAACTTGGATAGTGATCCCAGTAGTCAGATCATTAAAGTA
AACATTGCACACAAGAAGCGCGTTAGTGACCCGGAAGCGTACAAGAATTGGCTCAAGGCT
AAAAACGAAGAGATACGGAAAAATCGCGAAAAGGAGCTGCTTGCCAAACAGGAACTTCAA
CGCCAAAAA

consensusID : consensus_3923#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 353
fasta sequence

                              [AGATGACCTTAAAAACTGGACTGGCTAGNTTTTGAGTGAAATAATACGGGACAAAGAGGACAATACCAAGTCTTCCGANCGANNATGGGATNTTCTGAATGATANAGACACAGTNGGATGAGGCTAACNATNNTTCCTGAGTATGAAGATGTCGATGACGAATCGAAACTATCTAACGTTTTCTCGAACATGTCACTCGCAACATCACAGTCGAAGCTATCGATGTACTCTACGGAAAGTAACGAAGCGTCGGACGGAACTCACGGACANAGATGCCGAGCGTACCCTGGTGCAGAGTGACACCGAGGAAGAAGAAGATCCCGATGNACCGTTACGATGAAAGGGAATGGTTC]

[+] EMBL BX619832             [AGATGACCTTAAAAACTGGACTGGCTAGNTTTTGAGTGAAATAATACGGGACAAAGAGGACAATACCAAGTCTTCCGANCGANNATGGGATNTTCTGAATGATANAGACACAGTNGGATGAGGCTAACNATNNTTCCTGAGTATGAAGATGTCGATGACGAATCGAAACTATCTAACGTTTTCTCGAACATGTCACTCGCAACATCACAGTCGAAGCTATCGATGTACTCTACGGAAAGTAACGAAGCGTCGGACGGAACTCACGGACANAGATGCCGAGCGTACCCTGGTGCAGAGTGACACCGAGGAAGAAGAAGATCCCGATGNACCGTTACGATGAAAGGGAATGGTTC]




>consensus_3923#2
AGATGACCTTAAAAACTGGACTGGCTAGNTTTTGAGTGAAATAATACGGGACAAAGAGGA
CAATACCAAGTCTTCCGANCGANNATGGGATNTTCTGAATGATANAGACACAGTNGGATG
AGGCTAACNATNNTTCCTGAGTATGAAGATGTCGATGACGAATCGAAACTATCTAACGTT
TTCTCGAACATGTCACTCGCAACATCACAGTCGAAGCTATCGATGTACTCTACGGAAAGT
AACGAAGCGTCGGACGGAACTCACGGACANAGATGCCGAGCGTACCCTGGTGCAGAGTGA
CACCGAGGAAGAAGAAGATCCCGATGNACCGTTACGATGAAAGGGAATGGTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3923#1      ---------------------------------------------------CCGGGACAA 9
consensus_3923#2      ------------------------------------------------------------
consensus_3923#0      GCCCGAGGTTTCTGGTAGCACAAGCGATTCTAGCAATACGCTCGATGTCGGGTAGCGAAG 60
                                                                                  

consensus_3923#1      GCGATGAACGGTGCAGGAGCAACTAGCCTGGAATTACATTCGGAGAGTGCCTTAAAAA-T 68
consensus_3923#2      -------------------------------------------AGATGACCTTAAAAACT 17
consensus_3923#0      AGGAGGAGGAGGAGGAGGAGCACGAGAAACAACCCATTTTTACCGATCGTGGTGGCGGTG 120
                                                                  **      *       

consensus_3923#1      GGAT--GCTAGTTTT-GAG--GAAAT--TA-TAGGGCAAA--AGGCAAT-CCAAGTTTC- 116
consensus_3923#2      GGACTGGCTAGNTTTTGAGT-GAAATAATA-CGGGACAAAGAGGACAATACCAAGTCTTC 75
consensus_3923#0      ACGCAGATTTGAACTTGGATAGTGATCCCAGTAGGTCAGATCATTTAAAGGTAAAACATT 180
                              * *   * *    *  **   *   ** ** *      **    **      

consensus_3923#1      --GGCG-GAATGGGAT--TCTGAA-GATAGCGACACAG-CGGATGAAACTAACGATGCTT 169
consensus_3923#2      CGANCGANNATGGGATNTTCTGAATGATANAGACACAGTNGGATGAGGCTAACNATNNTT 135
consensus_3923#0      TGCACACCAAAGGAAGG--CGGCGTTAAGTTGACCCGGGAAGCGTACAAGAATTTGGGCT 238
                          *    * ** *    * *    *    *** * *   *   *    **       *

consensus_3923#1      C-TGAGTATGAAGATGTCGATTACGAAT-CGAAACTAGCGAACGTTTTCTCGAACATGTC 227
consensus_3923#2      CCTGAGTATGAAGATGTCGATGACGAAT-CGAAACTATCTAACGTTTTCTCGAACATGTC 194
consensus_3923#0      CAAGGGCTAAAAAACGGAAAGGAGGAATACGGGACNACATCCCGAAANAAGGGAAACTGG 298
                      *  * *    ** * *   *  * **** **  ** *     **       * * *    

consensus_3923#1      ACTCGCAACATCTCAGTCGAAACTATCGATGT-ACTCTACGGAAAGTAA--CGAAGC-GT 283
consensus_3923#2      ACTCGCAACATCACAGTCGAAGCTATCGATGT-ACTCTACGGAAAGTAA--CGAAGC-GT 250
consensus_3923#0      CCTTGGCCCAAAACCAGAGAAACTATCCANACCGCCCCAAAAAAAGGAAACCAAAGCAGG 358
                       ** *   **   *    *** ***** *     * * *   **** **  * **** * 

consensus_3923#1      CGGCCGAAACTCACGG-ACAA-GATGCCGAGCGTAC-------CCTGGTGCAGA-----G 329
consensus_3923#2      CGGACGGAACTCACGG-ACANAGATGCCGAGCGTAC-------CCTGGTGCAGA-----G 297
consensus_3923#0      CGGACAGAAGCAAAGCCGCCAANACACGAGGCGNACAACACGGCCCAACACACACCCACG 418
                      *** *  **   * *   *    *  *   *** **       **     ** *     *

consensus_3923#1      TGACACCGAGGA-----AGAAGAAGATCCCGATGAAC-GTTACGATGAA-GGGAATGGTT 382
consensus_3923#2      TGACACCGAGGA-----AGAAGAAGATCCCGATGNACCGTTACGATGAAAGGGAATGGTT 352
consensus_3923#0      CGACACCGGCAACTTCCAAAANAGGGACGCTTGGGACCTTTGGGAAAGCCGGGCCCNAAC 478
                       *******   *     * ** * *  * *   * **  **  **     ***       

consensus_3923#1      CCGGTAGCACAAGCGATTCTAGCAATACGCTCGATGCGGGTAGCGAAGAGGAGGAGGAGG 442
consensus_3923#2      C----------------------------------------------------------- 353
consensus_3923#0      GGGGAACTAAACCCAACTTTGGAACCAGACGGGCCGAACCCTTAATCAACGGCAAAACAG 538
                                                                                  

consensus_3923#1      AGGAGGAGCACGAGAAACAACCCATTTTTACCGATCGTGGTGGCGGTGACGCAGATTTGA 502
consensus_3923#2      ------------------------------------------------------------
consensus_3923#0      GTGGGCGCCACAACCCGGCAAACAAACGCGCCGCCCGCGAAACAACGACACACCACCNAA 598
                                                                                  

consensus_3923#1      ACTTGGATAGTGATCCCAGTAGTCAGATCATTAAAGTAAACATTGCACACAAGAAGCGCG 562
consensus_3923#2      ------------------------------------------------------------
consensus_3923#0      CGGAGNGGCCNCCNNNTNAGNGNGNNGCCCNCACCCCAACAACCCCCCANCCACANCNNC 658
                                                                                  

consensus_3923#1      TTAGTGACCCGGAAGCGTACAAGAATTGGCTCAAGGCTAAAAACGAAGAGATACGGAAAA 622
consensus_3923#2      ------------------------------------------------------------
consensus_3923#0      ACACNCAAAAAAACAACAACAAAGGAGGGNGGAACAANAAAAACAAACANACNACACACN 718
                                                                                  

consensus_3923#1      ATCGCGAAAAGGAGCTGCTTGCCAAACAGGAACTTCAACGCCAAAAA------- 669
consensus_3923#2      ------------------------------------------------------
consensus_3923#0      CCACCCCCCNCCCCCCCCCCGCGCCCCAAAACNACAAGNGGAGCGNGCCCCCCC 772