cluster # 3927

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Anopheles gambiae
cluster # 3927 cluster # 3927 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3927#0 length = 771 sequences # 2

consensus_3927#1 length = 581 sequences # 1

consensusID : consensus_3927#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 771
fasta sequence

                              [CCGCCCACGCGTCCGCGAAGCAGATGAGCTTCAAGTCGCTGGCGGAGGCGGAGAATGCGCCCGAGTTCATCATGACCGATTTTGCGAAGTGGGACCATCCGGCCAACACGCAGATCGCGTTCACCGTGCTCGGCCGCTACCAGGAGCAGCACGGCCGGCTGCCGCGCCCCTGGAACGTGGAGGATGCGGCCGAGTTCGTGGAGATGTGCCGCAAGCGCGCCAAGGAGATGGGGGTCGAGGAGCTGAACGAAGCGATGCTGACCAAGTTCGCCAAGGTGTGCGCCGGCGACCTGTGCCCGATGAACGGTGCGATCGGTGGCATTACGGCGCAGGAGGTGATGAAGGCCTGCACGGGCAAGTTCACCCCGATCAATCAGTACTTGTGCTACGATGCGCTGGAGTGTCTGCAGGAGGCGGACCTCACGGAGGAGGAGTGTGCTCCGACCGGGTCGCGCTACGATGGGCAGATTGCCGTGTTCGGGCGCAAGTTCCAGGACGTGCTGGGTCAGCTGAAGTACTTCATCGTCGGCGCCGGTGCGATCGGCTGCGAGCTGCTGAAGAACTTTGCGATGATTGGCGTCGCGTCCAAGGGCGACGGTGAAATCATCGTCACCGATATGGATCTGATCGAGAAGAGCAACCTGAACCGGCAGTTCCTGTTCCGGCCGCACGATGTGCAGCAGCCGAAGTCGCGCGTCGCCGCCCAGGCCGTGAAGCGCATGAACGGCGACATTTAAGGTGACGTCGCACGAGAACCGCGTCGGGCCGGAA]

[+] EMBL BM614977             [CCGCCCACGCGTCCGCGAAGCAGATGAGCTTCAAGTCGCTGGCGGAGGCGGAGAATGCGCCCGAGTTCATCATGACCGATTTTGCGAAGTGGGACCATCCGGCCAACACGCAGATCGCGTTCACCGTGCTCGGCCGCTACCAGGAGCAGCACGGCCGGCTGCCGCGCCCCTGGAACGTGGAGGATGCGGCCGAGTTCGTGGAGATGTGCCGCAAGCGCGCCAAGGAGATGGGGGTCGAGGAGCTGAACGAAGCGATGCTGACCAAGTTCGCCAAGGTGTGCGCCGGCGACCTGTGCCCGATGAACGGTGCGATCGGTGGCATTACGGCGCAGGAGGTGATGAAGGCCTGCACGGGCAAGTTCACCCCGATCAATCAGTACTTGTGCTACGATGCGCTGGAGTGTCTGCAGGAGGCGGACCTCACGGAGGAGGAGTGTGCTCCGACCGGGTCGCGCTACGATGGGCAGATTGCCGTGTTCGGGCGCAAGTTCCAGGACGTGCTGGGTCAGCTGAAGTACTTCATCGTCGGCGCCGGTGCGATCGGCTGCGAGCTGCTGAAGAACTTTGCGATGATTGGCGTCGCGTCCAAGGGCGACGGTGAAA                                                                                                                                                                        ]
[+] EMBL BM609728             [                                                                                                                                                                                        ccgGGCCGAGTTCGTGGAGATGTGCCGCAAGCGCGCCAAGGAGATGGGGGTCGAGGAGCTGAACGAAGCGATGCTGACCAAGTTCGCCAAGGTGTGCGCCGGCGACCTGTGCCCGATGAACGGTGCGATCGGTGGCATTACGGCGCAGGAGGTGATGAAGGCCTGCACGGGCAAGTTCACCCCGATCAATCAGTACTTGTGCTACGATGCGCTGGAGTGTCTGCAGGAGGCGGACCTCACGGAGGAGGAGTGTGCTCCGACCGGGTCGCGCTACGATGGGCAGATTGCCGTGTTCGGGCGCAAGTTCCAGGACGTGCTGGGTCAGCTGAAGTACTTCATCGTCGGCGCCGGTGCGATCGGCTGCGAGCTGCTGAAGAACTTTGCGATGATTGGCGTCGCGTCCAAGGGCGACGGTGAAATCATCGTCACCGATATGGATCTGATCGAGAAGAGCAACCTGAACCGGCAGTTCCTGTTCCGGCCGCACGATGTGCAGCAGCCGAAGTCGCGCGTCGCCGCCCAGGCCGTGAAGCGCATGAACGGCGACATTTAAGGTGACGTCGCACGAGAACCGCGTCGGGCCGGAA]




>consensus_3927#0
CCGCCCACGCGTCCGCGAAGCAGATGAGCTTCAAGTCGCTGGCGGAGGCGGAGAATGCGC
CCGAGTTCATCATGACCGATTTTGCGAAGTGGGACCATCCGGCCAACACGCAGATCGCGT
TCACCGTGCTCGGCCGCTACCAGGAGCAGCACGGCCGGCTGCCGCGCCCCTGGAACGTGG
AGGATGCGGCCGAGTTCGTGGAGATGTGCCGCAAGCGCGCCAAGGAGATGGGGGTCGAGG
AGCTGAACGAAGCGATGCTGACCAAGTTCGCCAAGGTGTGCGCCGGCGACCTGTGCCCGA
TGAACGGTGCGATCGGTGGCATTACGGCGCAGGAGGTGATGAAGGCCTGCACGGGCAAGT
TCACCCCGATCAATCAGTACTTGTGCTACGATGCGCTGGAGTGTCTGCAGGAGGCGGACC
TCACGGAGGAGGAGTGTGCTCCGACCGGGTCGCGCTACGATGGGCAGATTGCCGTGTTCG
GGCGCAAGTTCCAGGACGTGCTGGGTCAGCTGAAGTACTTCATCGTCGGCGCCGGTGCGA
TCGGCTGCGAGCTGCTGAAGAACTTTGCGATGATTGGCGTCGCGTCCAAGGGCGACGGTG
AAATCATCGTCACCGATATGGATCTGATCGAGAAGAGCAACCTGAACCGGCAGTTCCTGT
TCCGGCCGCACGATGTGCAGCAGCCGAAGTCGCGCGTCGCCGCCCAGGCCGTGAAGCGCA
TGAACGGCGACATTTAAGGTGACGTCGCACGAGAACCGCGTCGGGCCGGAA

consensusID : consensus_3927#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 581
fasta sequence

                              [CCGCGGACGCGTGGGCGGACGCGTGGGGCGCGGTGGCATCGCGACCCAGGTGAAGATGTCGAAGCAGATGAGCTTCAAGTCGCTGGCCGAGGCGGAGAATGCGCCCGAGTTCATCATGACCGACTTTGCGAAGTGGGACCATCCGGCTAACACGCAGATCGCGTTCACCGTGCTCGGCCGCTACCAGGAGCAGCACGGCCGGCTGCCACGTCCCTGGAACGTGGAGGATGCGGCCGAGTTCGTGGAGATGTGCCGCAAGCGCGCCAAGGAGATGGGGGTCGAGGAGCTGAACGAAGCGATGCTGACGAAGTTCGCCAAGGTGTGCGCCGGCGACCTGTGCCCGATGAACGGTGCGATCGGTGGCATTACGGCGCAGGAGGTGATGAAGGCCTGCACGGGCAAGTTCACCCCGATCAATCAGTACTTGTGCTACGATGCGCTGGAGTGTCTGCAGGAGGCGGACCTCACGGAGGAGGAGTGTGCCCCGACCGGTTCGCGCTACGATGGGCAGATTGCCGTGTTCGGGCGCAAGTTCCAGGACGTGCTGGGTCAGCTGAAGTACTTCATCGTCGGGGGCCGGT]

[+] EMBL BM600190             [CCGCGGACGCGTGGGCGGACGCGTGGGGCGCGGTGGCATCGCGACCCAGGTGAAGATGTCGAAGCAGATGAGCTTCAAGTCGCTGGCCGAGGCGGAGAATGCGCCCGAGTTCATCATGACCGACTTTGCGAAGTGGGACCATCCGGCTAACACGCAGATCGCGTTCACCGTGCTCGGCCGCTACCAGGAGCAGCACGGCCGGCTGCCACGTCCCTGGAACGTGGAGGATGCGGCCGAGTTCGTGGAGATGTGCCGCAAGCGCGCCAAGGAGATGGGGGTCGAGGAGCTGAACGAAGCGATGCTGACGAAGTTCGCCAAGGTGTGCGCCGGCGACCTGTGCCCGATGAACGGTGCGATCGGTGGCATTACGGCGCAGGAGGTGATGAAGGCCTGCACGGGCAAGTTCACCCCGATCAATCAGTACTTGTGCTACGATGCGCTGGAGTGTCTGCAGGAGGCGGACCTCACGGAGGAGGAGTGTGCCCCGACCGGTTCGCGCTACGATGGGCAGATTGCCGTGTTCGGGCGCAAGTTCCAGGACGTGCTGGGTCAGCTGAAGTACTTCATCGTCGGGGGCCGGT]




>consensus_3927#1
CCGCGGACGCGTGGGCGGACGCGTGGGGCGCGGTGGCATCGCGACCCAGGTGAAGATGTC
GAAGCAGATGAGCTTCAAGTCGCTGGCCGAGGCGGAGAATGCGCCCGAGTTCATCATGAC
CGACTTTGCGAAGTGGGACCATCCGGCTAACACGCAGATCGCGTTCACCGTGCTCGGCCG
CTACCAGGAGCAGCACGGCCGGCTGCCACGTCCCTGGAACGTGGAGGATGCGGCCGAGTT
CGTGGAGATGTGCCGCAAGCGCGCCAAGGAGATGGGGGTCGAGGAGCTGAACGAAGCGAT
GCTGACGAAGTTCGCCAAGGTGTGCGCCGGCGACCTGTGCCCGATGAACGGTGCGATCGG
TGGCATTACGGCGCAGGAGGTGATGAAGGCCTGCACGGGCAAGTTCACCCCGATCAATCA
GTACTTGTGCTACGATGCGCTGGAGTGTCTGCAGGAGGCGGACCTCACGGAGGAGGAGTG
TGCCCCGACCGGTTCGCGCTACGATGGGCAGATTGCCGTGTTCGGGCGCAAGTTCCAGGA
CGTGCTGGGTCAGCTGAAGTACTTCATCGTCGGGGGCCGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3927#0      -----------------------------------------CCGCCCACGCGTCCG---C 16
consensus_3927#1      CCGCGGACGCGTGGGCGGACGCGTGGGGCGCGGTGGCATCGCGACCCAGGTGAAGATGTC 60
                                                               *  **** * *       *

consensus_3927#0      GAAGCAGATGAGCTTCAAGTCGCTGGCGGAGGCGGAGAATGCGCCCGAGTTCATCATGAC 76
consensus_3927#1      GAAGCAGATGAGCTTCAAGTCGCTGGCCGAGGCGGAGAATGCGCCCGAGTTCATCATGAC 120
                      *************************** ********************************

consensus_3927#0      CGATTTTGCGAAGTGGGACCATCCGGCCAACACGCAGATCGCGTTCACCGTGCTCGGCCG 136
consensus_3927#1      CGACTTTGCGAAGTGGGACCATCCGGCTAACACGCAGATCGCGTTCACCGTGCTCGGCCG 180
                      *** *********************** ********************************

consensus_3927#0      CTACCAGGAGCAGCACGGCCGGCTGCCGCGCCCCTGGAACGTGGAGGATGCGGCCGAGTT 196
consensus_3927#1      CTACCAGGAGCAGCACGGCCGGCTGCCACGTCCCTGGAACGTGGAGGATGCGGCCGAGTT 240
                      *************************** ** *****************************

consensus_3927#0      CGTGGAGATGTGCCGCAAGCGCGCCAAGGAGATGGGGGTCGAGGAGCTGAACGAAGCGAT 256
consensus_3927#1      CGTGGAGATGTGCCGCAAGCGCGCCAAGGAGATGGGGGTCGAGGAGCTGAACGAAGCGAT 300
                      ************************************************************

consensus_3927#0      GCTGACCAAGTTCGCCAAGGTGTGCGCCGGCGACCTGTGCCCGATGAACGGTGCGATCGG 316
consensus_3927#1      GCTGACGAAGTTCGCCAAGGTGTGCGCCGGCGACCTGTGCCCGATGAACGGTGCGATCGG 360
                      ****** *****************************************************

consensus_3927#0      TGGCATTACGGCGCAGGAGGTGATGAAGGCCTGCACGGGCAAGTTCACCCCGATCAATCA 376
consensus_3927#1      TGGCATTACGGCGCAGGAGGTGATGAAGGCCTGCACGGGCAAGTTCACCCCGATCAATCA 420
                      ************************************************************

consensus_3927#0      GTACTTGTGCTACGATGCGCTGGAGTGTCTGCAGGAGGCGGACCTCACGGAGGAGGAGTG 436
consensus_3927#1      GTACTTGTGCTACGATGCGCTGGAGTGTCTGCAGGAGGCGGACCTCACGGAGGAGGAGTG 480
                      ************************************************************

consensus_3927#0      TGCTCCGACCGGGTCGCGCTACGATGGGCAGATTGCCGTGTTCGGGCGCAAGTTCCAGGA 496
consensus_3927#1      TGCCCCGACCGGTTCGCGCTACGATGGGCAGATTGCCGTGTTCGGGCGCAAGTTCCAGGA 540
                      *** ******** ***********************************************

consensus_3927#0      CGTGCTGGGTCAGCTGAAGTACTTCATCGTCGGCG-CCGGTGCGATCGGCTGCGAGCTGC 555
consensus_3927#1      CGTGCTGGGTCAGCTGAAGTACTTCATCGTCGGGGGCCGGT------------------- 581
                      ********************************* * *****                   

consensus_3927#0      TGAAGAACTTTGCGATGATTGGCGTCGCGTCCAAGGGCGACGGTGAAATCATCGTCACCG 615
consensus_3927#1      ------------------------------------------------------------
                                                                                  

consensus_3927#0      ATATGGATCTGATCGAGAAGAGCAACCTGAACCGGCAGTTCCTGTTCCGGCCGCACGATG 675
consensus_3927#1      ------------------------------------------------------------
                                                                                  

consensus_3927#0      TGCAGCAGCCGAAGTCGCGCGTCGCCGCCCAGGCCGTGAAGCGCATGAACGGCGACATTT 735
consensus_3927#1      ------------------------------------------------------------
                                                                                  

consensus_3927#0      AAGGTGACGTCGCACGAGAACCGCGTCGGGCCGGAA 771
consensus_3927#1      ------------------------------------