cluster # 394

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Anopheles gambiae
cluster # 394 cluster # 394 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_394#0 length = 568 sequences # 1

consensus_394#1 length = 425 sequences # 1

consensusID : consensus_394#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 568
fasta sequence

                              [CAGAATCCCCGAGGTTATGCTGATCTCCTGGACTCGCGAGGGGGCTGATGCTGATCTCCAACTTGTGGTTGTGGTTCGGTTGTTAGCACCCGCCAGAACGGCCAGTGTGTTTACGTGCGTGTCCGAGGACTATCGCATCCCATCACCCGCAAGTAACCAGTGCCTGTGTGTGCCTGTGTTTGTTGTCTGTGTTCGTGTTGCGGCTGTGATTTGAAGCTTGAAGCGAACTGGACATTACATTCTAAAGCCTAATCGAAGTCAGGTCGAGGCAATCCGGTCTGACGGCTGTTGGGCCGGACCGGTACGACATTCGAAACGCCCCAANAGAAGANTTACCAACCGTTCCCCCGGGCACCGGGGGTGCGCAACACGAAGGGAACCGTTTTTCCCACCGCGGGGGTTTTCAAAGGGTCCTTGTACACAAGNGGCGCGCCCGGGAGNGGAAACCTTTTAAAATTTTATCCCCCGGGGAAACACTCACACANCGGGCACAAACAACCCAAACGCGCCAAGGGCGGTCCCAGTTTCTAAGGGGCCCACGNGGGCCCAAGTGCCCAACGGCCCAAGG]

[+] EMBL AL695452             [CAGAATCCCCGAGGTTATGCTGATCTCCTGGACTCGCGAGGGGGCTGATGCTGATCTCCAACTTGTGGTTGTGGTTCGGTTGTTAGCACCCGCCAGAACGGCCAGTGTGTTTACGTGCGTGTCCGAGGACTATCGCATCCCATCACCCGCAAGTAACCAGTGCCTGTGTGTGCCTGTGTTTGTTGTCTGTGTTCGTGTTGCGGCTGTGATTTGAAGCTTGAAGCGAACTGGACATTACATTCTAAAGCCTAATCGAAGTCAGGTCGAGGCAATCCGGTCTGACGGCTGTTGGGCCGGACCGGTACGACATTCGAAACGCCCCAANAGAAGANTTACCAACCGTTCCCCCGGGCACCGGGGGTGCGCAACACGAAGGGAACCGTTTTTCCCACCGCGGGGGTTTTCAAAGGGTCCTTGTACACAAGNGGCGCGCCCGGGAGNGGAAACCTTTTAAAATTTTATCCCCCGGGGAAACACTCACACANCGGGCACAAACAACCCAAACGCGCCAAGGGCGGTCCCAGTTTCTAAGGGGCCCACGNGGGCCCAAGTGCCCAACGGCCCAAGG]




>consensus_394#0
CAGAATCCCCGAGGTTATGCTGATCTCCTGGACTCGCGAGGGGGCTGATGCTGATCTCCA
ACTTGTGGTTGTGGTTCGGTTGTTAGCACCCGCCAGAACGGCCAGTGTGTTTACGTGCGT
GTCCGAGGACTATCGCATCCCATCACCCGCAAGTAACCAGTGCCTGTGTGTGCCTGTGTT
TGTTGTCTGTGTTCGTGTTGCGGCTGTGATTTGAAGCTTGAAGCGAACTGGACATTACAT
TCTAAAGCCTAATCGAAGTCAGGTCGAGGCAATCCGGTCTGACGGCTGTTGGGCCGGACC
GGTACGACATTCGAAACGCCCCAANAGAAGANTTACCAACCGTTCCCCCGGGCACCGGGG
GTGCGCAACACGAAGGGAACCGTTTTTCCCACCGCGGGGGTTTTCAAAGGGTCCTTGTAC
ACAAGNGGCGCGCCCGGGAGNGGAAACCTTTTAAAATTTTATCCCCCGGGGAAACACTCA
CACANCGGGCACAAACAACCCAAACGCGCCAAGGGCGGTCCCAGTTTCTAAGGGGCCCAC
GNGGGCCCAAGTGCCCAACGGCCCAAGG

consensusID : consensus_394#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 425
fasta sequence

                              [TGCCGAGGCTCGACAGATCTGGATGTTCCGACAATTCGGAACCGGGTCTGCTTGGCGAAGGGCCGCCCGGAGGGGTCGGCTAGGCGGGCACAAAGCGTAACCTTATGCCAAAAGATCAAACGGCGTGATGAAGAACTTTGCCGACGTGGTGAAGGAGGTGAAACCGTCGGTGCTGATCGGTGCGTCCGCGGCGGGCGGCGCGTTTACGCCGGAGATTCTGCAGGCCATGGGCCAGTTCAACGAGCGGCCGATCATTTTCCGCCCTTGGTCCAACCCGACCTCCAAGGCGGAGTGTACGGCACAGGCGGCTATGATAATACCGAGGGTCGGTGCATTTTTTGCGTCGGGGTCTCCGTTCCCGCCGGTGCAGTATGGCGGAAAGACGTTCATCACCGGCAGGGGCAACAACGCGTACATCTTCCCGG]

[+] EMBL AL930210             [TGCCGAGGCTCGACAGATCTGGATGTTCCGACAATTCGGAACCGGGTCTGCTTGGCGAAGGGCCGCCCGGAGGGGTCGGCTAGGCGGGCACAAAGCGTAACCTTATGCCAAAAGATCAAACGGCGTGATGAAGAACTTTGCCGACGTGGTGAAGGAGGTGAAACCGTCGGTGCTGATCGGTGCGTCCGCGGCGGGCGGCGCGTTTACGCCGGAGATTCTGCAGGCCATGGGCCAGTTCAACGAGCGGCCGATCATTTTCCGCCCTTGGTCCAACCCGACCTCCAAGGCGGAGTGTACGGCACAGGCGGCTATGATAATACCGAGGGTCGGTGCATTTTTTGCGTCGGGGTCTCCGTTCCCGCCGGTGCAGTATGGCGGAAAGACGTTCATCACCGGCAGGGGCAACAACGCGTACATCTTCCCGG]




>consensus_394#1
TGCCGAGGCTCGACAGATCTGGATGTTCCGACAATTCGGAACCGGGTCTGCTTGGCGAAG
GGCCGCCCGGAGGGGTCGGCTAGGCGGGCACAAAGCGTAACCTTATGCCAAAAGATCAAA
CGGCGTGATGAAGAACTTTGCCGACGTGGTGAAGGAGGTGAAACCGTCGGTGCTGATCGG
TGCGTCCGCGGCGGGCGGCGCGTTTACGCCGGAGATTCTGCAGGCCATGGGCCAGTTCAA
CGAGCGGCCGATCATTTTCCGCCCTTGGTCCAACCCGACCTCCAAGGCGGAGTGTACGGC
ACAGGCGGCTATGATAATACCGAGGGTCGGTGCATTTTTTGCGTCGGGGTCTCCGTTCCC
GCCGGTGCAGTATGGCGGAAAGACGTTCATCACCGGCAGGGGCAACAACGCGTACATCTT
CCCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_394#0      CAGAATCCCCGAGGTTATGCTGATCTCCTGGACTCGCGAGGGGGCTGATGCTGATCTCCA 60
consensus_394#1      ------TGCCGAGGCTCGACAGATCT--GGATGTTCCGACAATTCGGAACCGGGTCTGCT 52
                             ****** *   * *****   *   *  ***     * **  * * *** * 

consensus_394#0      ACTTGTGGTTGTGGTTCGGTTGTTAGCACCCGCCAGAACGGCCAGTGTGTTTACGTGCGT 120
consensus_394#1      -----TGGCGAAGGGCCGCCCGGAGGGGTCGGCTAGG-CGGGCACAAAGCGTAACCTTAT 106
                          ***    **  **   *   *   * ** **  *** **    *  **      *

consensus_394#0      GTCCGAGGACTATCGCATCCCATCACCCGCAAGTAACCAGTGCCTGTGTGTGCCTGTGTT 180
consensus_394#1      GCCAAAAGATCAAACGGCGTGATGAA--GAACTTTGCCGACGTGGTGAAGGAGGTGAAAC 164
                     * *  * **  *         ** *   * *  *  **   *       *    **    

consensus_394#0      TGTTGTCTGTGTTCGTGTTGCGGCTGTGATTTGAAGCTTGAAGCGAACTGGACATTACAT 240
consensus_394#1      CGTCGGTGCTGATCG--GTGCGTCCGCGGCGGGCGGCGCGTT-TACGCCGGAGATT---C 218
                      ** *    ** ***   **** * * *    *  **  *       * *** ***    

consensus_394#0      TCTAAAGCCTAATCGAAGTCAGGTCGAGGCAATCCGGTCTGACGGCTGTTGGGCCGGACC 300
consensus_394#1      TGCAGGCCATGGGCCAGTTCAACGAGCGGCCGATCATTTT--CCGCCCTTGGTCCAACCC 276
                     *  *   * *   * *  ***    * ***    *  * *  * **  **** **   **

consensus_394#0      GGTACGACATTCGAAACGCCCCAANAGAAGANTTACCAACCGTTCCCCCGGGCACCGGGG 360
consensus_394#1      GACCTCCAAGGCGGAGTGT----ACGGCACAGGCGGCTATGATAATACCGAGGGTCGGTG 332
                     *       *  ** *  *     *  * * *     * *   *    *** *   *** *

consensus_394#0      GTGCGCAACACGAAGGGAACCGTTTTTCCCACCGCGGGGGTTTTCAAAGGGTCCTTGTAC 420
consensus_394#1      -CATTTTTTGCGTCGGGGTCTCCGTTCCCGCCGGTGCAGTATGGCGGAAAGACGTTCATC 391
                               **  ***  *    ** **  * * *  *  *  *  *  * * **   *

consensus_394#0      ACAAGNGGCGCGCCCGGGAGNGGAAACCTTTTAAAATTTTATCCCCCGGGGAAACACTCA 480
consensus_394#1      ACCGGCAGGG-GCAACAACGCGTACATCTTCCCGG------------------------- 425
                     **  *  * * **      * * * * ***                              

consensus_394#0      CACANCGGGCACAAACAACCCAAACGCGCCAAGGGCGGTCCCAGTTTCTAAGGGGCCCAC 540
consensus_394#1      ------------------------------------------------------------
                                                                                 

consensus_394#0      GNGGGCCCAAGTGCCCAACGGCCCAAGG 568
consensus_394#1      ----------------------------