These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_394#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 568 fasta sequence [CAGAATCCCCGAGGTTATGCTGATCTCCTGGACTCGCGAGGGGGCTGATGCTGATCTCCAACTTGTGGTTGTGGTTCGGTTGTTAGCACCCGCCAGAACGGCCAGTGTGTTTACGTGCGTGTCCGAGGACTATCGCATCCCATCACCCGCAAGTAACCAGTGCCTGTGTGTGCCTGTGTTTGTTGTCTGTGTTCGTGTTGCGGCTGTGATTTGAAGCTTGAAGCGAACTGGACATTACATTCTAAAGCCTAATCGAAGTCAGGTCGAGGCAATCCGGTCTGACGGCTGTTGGGCCGGACCGGTACGACATTCGAAACGCCCCAANAGAAGANTTACCAACCGTTCCCCCGGGCACCGGGGGTGCGCAACACGAAGGGAACCGTTTTTCCCACCGCGGGGGTTTTCAAAGGGTCCTTGTACACAAGNGGCGCGCCCGGGAGNGGAAACCTTTTAAAATTTTATCCCCCGGGGAAACACTCACACANCGGGCACAAACAACCCAAACGCGCCAAGGGCGGTCCCAGTTTCTAAGGGGCCCACGNGGGCCCAAGTGCCCAACGGCCCAAGG] [+] EMBL AL695452 [CAGAATCCCCGAGGTTATGCTGATCTCCTGGACTCGCGAGGGGGCTGATGCTGATCTCCAACTTGTGGTTGTGGTTCGGTTGTTAGCACCCGCCAGAACGGCCAGTGTGTTTACGTGCGTGTCCGAGGACTATCGCATCCCATCACCCGCAAGTAACCAGTGCCTGTGTGTGCCTGTGTTTGTTGTCTGTGTTCGTGTTGCGGCTGTGATTTGAAGCTTGAAGCGAACTGGACATTACATTCTAAAGCCTAATCGAAGTCAGGTCGAGGCAATCCGGTCTGACGGCTGTTGGGCCGGACCGGTACGACATTCGAAACGCCCCAANAGAAGANTTACCAACCGTTCCCCCGGGCACCGGGGGTGCGCAACACGAAGGGAACCGTTTTTCCCACCGCGGGGGTTTTCAAAGGGTCCTTGTACACAAGNGGCGCGCCCGGGAGNGGAAACCTTTTAAAATTTTATCCCCCGGGGAAACACTCACACANCGGGCACAAACAACCCAAACGCGCCAAGGGCGGTCCCAGTTTCTAAGGGGCCCACGNGGGCCCAAGTGCCCAACGGCCCAAGG] consensusID : consensus_394#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 425 fasta sequence [TGCCGAGGCTCGACAGATCTGGATGTTCCGACAATTCGGAACCGGGTCTGCTTGGCGAAGGGCCGCCCGGAGGGGTCGGCTAGGCGGGCACAAAGCGTAACCTTATGCCAAAAGATCAAACGGCGTGATGAAGAACTTTGCCGACGTGGTGAAGGAGGTGAAACCGTCGGTGCTGATCGGTGCGTCCGCGGCGGGCGGCGCGTTTACGCCGGAGATTCTGCAGGCCATGGGCCAGTTCAACGAGCGGCCGATCATTTTCCGCCCTTGGTCCAACCCGACCTCCAAGGCGGAGTGTACGGCACAGGCGGCTATGATAATACCGAGGGTCGGTGCATTTTTTGCGTCGGGGTCTCCGTTCCCGCCGGTGCAGTATGGCGGAAAGACGTTCATCACCGGCAGGGGCAACAACGCGTACATCTTCCCGG] [+] EMBL AL930210 [TGCCGAGGCTCGACAGATCTGGATGTTCCGACAATTCGGAACCGGGTCTGCTTGGCGAAGGGCCGCCCGGAGGGGTCGGCTAGGCGGGCACAAAGCGTAACCTTATGCCAAAAGATCAAACGGCGTGATGAAGAACTTTGCCGACGTGGTGAAGGAGGTGAAACCGTCGGTGCTGATCGGTGCGTCCGCGGCGGGCGGCGCGTTTACGCCGGAGATTCTGCAGGCCATGGGCCAGTTCAACGAGCGGCCGATCATTTTCCGCCCTTGGTCCAACCCGACCTCCAAGGCGGAGTGTACGGCACAGGCGGCTATGATAATACCGAGGGTCGGTGCATTTTTTGCGTCGGGGTCTCCGTTCCCGCCGGTGCAGTATGGCGGAAAGACGTTCATCACCGGCAGGGGCAACAACGCGTACATCTTCCCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_394#0 CAGAATCCCCGAGGTTATGCTGATCTCCTGGACTCGCGAGGGGGCTGATGCTGATCTCCA 60 consensus_394#1 ------TGCCGAGGCTCGACAGATCT--GGATGTTCCGACAATTCGGAACCGGGTCTGCT 52 ****** * * ***** * * *** * ** * * *** * consensus_394#0 ACTTGTGGTTGTGGTTCGGTTGTTAGCACCCGCCAGAACGGCCAGTGTGTTTACGTGCGT 120 consensus_394#1 -----TGGCGAAGGGCCGCCCGGAGGGGTCGGCTAGG-CGGGCACAAAGCGTAACCTTAT 106 *** ** ** * * * ** ** *** ** * ** * consensus_394#0 GTCCGAGGACTATCGCATCCCATCACCCGCAAGTAACCAGTGCCTGTGTGTGCCTGTGTT 180 consensus_394#1 GCCAAAAGATCAAACGGCGTGATGAA--GAACTTTGCCGACGTGGTGAAGGAGGTGAAAC 164 * * * ** * ** * * * * ** * * ** consensus_394#0 TGTTGTCTGTGTTCGTGTTGCGGCTGTGATTTGAAGCTTGAAGCGAACTGGACATTACAT 240 consensus_394#1 CGTCGGTGCTGATCG--GTGCGTCCGCGGCGGGCGGCGCGTT-TACGCCGGAGATT---C 218 ** * ** *** **** * * * * ** * * *** *** consensus_394#0 TCTAAAGCCTAATCGAAGTCAGGTCGAGGCAATCCGGTCTGACGGCTGTTGGGCCGGACC 300 consensus_394#1 TGCAGGCCATGGGCCAGTTCAACGAGCGGCCGATCATTTT--CCGCCCTTGGTCCAACCC 276 * * * * * * *** * *** * * * * ** **** ** ** consensus_394#0 GGTACGACATTCGAAACGCCCCAANAGAAGANTTACCAACCGTTCCCCCGGGCACCGGGG 360 consensus_394#1 GACCTCCAAGGCGGAGTGT----ACGGCACAGGCGGCTATGATAATACCGAGGGTCGGTG 332 * * ** * * * * * * * * * *** * *** * consensus_394#0 GTGCGCAACACGAAGGGAACCGTTTTTCCCACCGCGGGGGTTTTCAAAGGGTCCTTGTAC 420 consensus_394#1 -CATTTTTTGCGTCGGGGTCTCCGTTCCCGCCGGTGCAGTATGGCGGAAAGACGTTCATC 391 ** *** * ** ** * * * * * * * * * ** * consensus_394#0 ACAAGNGGCGCGCCCGGGAGNGGAAACCTTTTAAAATTTTATCCCCCGGGGAAACACTCA 480 consensus_394#1 ACCGGCAGGG-GCAACAACGCGTACATCTTCCCGG------------------------- 425 ** * * * ** * * * * *** consensus_394#0 CACANCGGGCACAAACAACCCAAACGCGCCAAGGGCGGTCCCAGTTTCTAAGGGGCCCAC 540 consensus_394#1 ------------------------------------------------------------ consensus_394#0 GNGGGCCCAAGTGCCCAACGGCCCAAGG 568 consensus_394#1 ---------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||