These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3942#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1312 fasta sequence [TCATGCACGANTCCCCTGACGGTTATTGTGTGCTACGTGGGGTAAATCTGGTTACGTTGCGCACATACCTGTTGGATAACATTTAACTGAGTGCTTTCAACGGCAGTGAAGTGCGCNTNCTAGTTTAATAGATATGTGGATGTGAAGATNTGGTAGATNATNTAACCAAAAGGATTNATATTTGGCGACAAAGTTTGCAATGCCATTACTTACCTGGGCAGTGTCCTACTANACCTACTGACACAACGTACTTNACCCATTANAACGCTGTTTCCACNATTAAAANCATACGCATAACANTGGGCCAAGCAACCATAGGNNGANAAACGAAACAACACCTAACGANAGNCAATCCACANCCTNTNACNCCATGNCAANNNGAANNNGCCAATGGGAAATAANTAGNGNCAGGGATANNANNACACGAAAACATGTNACCACGGGAAANAACGAACNNNANAAAGATAATAAAAAGAGACCANACGAAAAGNGGGANAGTAATAAAGAAGTAGGACAANAAGANAGAGGATNAAAAACACAAAAACAGACCCTCATANAAGTAAACTAAACAATGGCATACACNGAAAAAAAAGTAACAACGAANAAAAATTACAANAACAAAANNAAATGGACNACAGGNNNCANTAGCAGAANAANCTCATCAANAGAAGAACCCTATGAGAGANNAANTGNNGANCGGTCNTAACTGNATGNACCGANANNNACAAACACTNCTAAANAAANAANNACTGAAGCAGGGATTAAGAAAAAAANNGCAGGAANNGGTGGNCGNNATGGCTANGGGCCACGAAGTATATACCACACNACACCCAACACAACGGTATTCCCGCATGGTCTCGNTGGATGTGGACCTAGGAGTGGGAAAAGCATATGGTGTNACTAAACGANNGAGANAACGTCAGTAGCGAGNGNNAGNAATNNCCCGCTAGTCGAGANGCAGAGGNAGAGACAGCCAGAAGAGTAGAGGGTANNGAANGNGNTAGAAACAAGGGGGGGNTACACNACGGGANTNNGCNCGGATGTACTAAAAACANNCTGACAGCCANAACGAAGGGGCNACANNGAACGGNGAAANTGGAGCNGGCATANAAGAANGAAGAGNCANNACANANGNACNANANAGGCNGAGNATGTGTGTGGNTAGANGNGCAGGANCTNGCNCCCNATGNGANGGGGNAGTAAGNGAAANNGAAGTNTCNGNTAGGCCAGGGTANGCCCTGGNACGGGGCACATACAGAAGCGGAGAGAGANAAGAGCGGAACAGAGNNAGTNTCANAANNACACNCGCCGC] [+] EMBL AL696416 [TCATGCACGANTCCCCTGACGGTTATTGTGTGCTACGTGGGGTAAATCTGGTTACGTTGCGCACATACCTGTTGGATAACATTTAACTGAGTGCTTTCAACGGCAGTGAAGTGCGCNTNCTAGTTTAATAGATATGTGGATGTGAAGATNTGGTAGATNATNTAACCAAAAGGATTNATATTTGGCGACAAAGTTTGCAATGCCATTACTTACCTGGGCAGTGTCCTACTANACCTACTGACACAACGTACTTNACCCATTANAACGCTGTTTCCACNATTAAAANCATACGCATAACANTGGGCCAAGCAACCATAGGNNGANAAACGAAACAACACCTAACGANAGNCAATCCACANCCTNTNACNCCATGNCAANNNGAANNNGCCAATGGGAAATAANTAGNGNCAGGGATANNANNACACGAAAACATGTNACCACGGGAAANAACGAACNNNANAAAGATAATAAAAAGAGACCANACGAAAAGNGGGANAGTAATAAAGAAGTAGGACAANAAGANAGAGGATNAAAAACACAAAAACAGACCCTCATANAAGTAAACTAAACAATGGCATACACNGAAAAAAAAGTAACAACGAANAAAAATTACAANAACAAAANNAAATGGACNACAGGNNNCANTAGCAGAANAANCTCATCAANAGAAGAACCCTATGAGAGANNAANTGNNGANCGGTCNTAACTGNATGNACCGANANNNACAAACACTNCTAAANAAANAANNACTGAAGCAGGGATTAAGAAAAAAANNGCAGGAANNGGTGGNCGNNATGGCTANGGGCCACGAAGTATATACCACACNACACCCAACACAACGGTATTCCCGCATGGTCTCGNTGGATGTGGACCTAGGAGTGGGAAAAGCATATGGTGTNACTAAACGANNGAGANAACGTCAGTAGCGAGNGNNAGNAATNNCCCGCTAGTCGAGANGCAGAGGNAGAGACAGCCAGAAGAGTAGAGGGTANNGAANGNGNTAGAAACAAGGGGGGGNTACACNACGGGANTNNGCNCGGATGTACTAAAAACANNCTGACAGCCANAACGAAGGGGCNACANNGAACGGNGAAANTGGAGCNGGCATANAAGAANGAAGAGNCANNACANANGNACNANANAGGCNGAGNATGTGTGTGGNTAGANGNGCAGGANCTNGCNCCCNATGNGANGGGGNAGTAAGNGAAANNGAAGTNTCNGNTAGGCCAGGGTANGCCCTGGNACGGGGCACATACAGAAGCGGAGAGAGANAAGAGCGGAACAGAGNNAGTNTCANAANNACACNCGCCGC] consensusID : consensus_3942#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 914 fasta sequence [TCCCCGAGGTTAATCGCTTGGGCTACGGGGTAATCTGGTTACGTTGCGCACATACCGTTGGATAACATTTAACTGAGTGCTTTCAACGGCAGTGAAGGCGCATTCTAGTTTAATAGATTTGTGGATGTGAAGATTGGTAGATTATTTTCCAAAGATTTATTGCGAAAGTTGCAAGCCATTCTTCCGGAGGTCTTCTTCCCTCTGCAAACGTCTACCATAAAGCGTTACATACACTCGCATAAGTGGCAAGCACATTGAATTACCTTTCAATCTAACGATGAAATCGACCTTCCTGGTGGTGCTGGAGTTGGCGTTCTTCCTTCTGCCCGGACGCGTTCTCTACGCCCAGAAGGATAGCGAGGACGGTGGGTCACACTACTCCTCAGACGACTGCCAGGTAACGCCCGTCATCCACGTGCTGCAGTATCCGGGCTGCGTGCCGAAACCGATCCCCTCGTTCGCGTGCATTGGCCGCTGCGCCAGCTACATCCAGGTGTCCGGCAGCAAGATCTGGCAGATGGAGCGGTCCTGCATGTGCTGCCAGGAGTCGGGCGAACGGGAAGGCGTCCGTGTCGCTCTTCTGTCCCAAGGCGAAGAATGGCGAGAAAAAAGTTCCGCAAAGTGTCGACGAAAGCACCCGCGTGGAGTGGNATGTGCCCGACCCGGGCACCCCGGGCCATCGAGGACGGCCGAACGTATTCCCCAAGAGCTGACGTCCTTTGCCCACATAAGGGTACATGACCGGTACTCCAAAGTCGAACTCAATTCACTCGCATAAGTACCCGTTGGGTNGAANGAAGTTAAATCAACCTANANGGATCAACGTCNAAAANCAAGGCTCCGCTCAGAAAAACGGGTCACGGATGACAAGAAATCGTAACACGGACGGTGCAGAAACAATTTCTCACTTTGTG] [+] EMBL AL932888 [TCCCCGAGGTTAATCGCTTGGGCTACGGGGTAATCTGGTTACGTTGCGCACATACCGTTGGATAACATTTAACTGAGTGCTTTCAACGGCAGTGAAGGCGCATTCTAGTTTAATAGATTTGTGGATGTGAAGATTGGTAGATTATTTTCCAAAGATTTATTGCGAAAGTTGCAAGCCATTCTTCCGGAGGTCTTCTTCCCTCTGCAAACGTCTACCATAAAGCGTTACATACACTCGCATAAGTGGCAAGCACATTGAATTACCTTTCAATCTAACGATGAAATCGACCTTCCTGGTGGTGCTGGAGTTGGCGTTCTTCCTTCTGCCCGGACGCGTTCTCTACGCCCAGAAGGATAGCGAGGACGGTGGGTCACACTACTCCTCAGACGACTGCCAGGTAACGCCCGTCATCCACGTGCTGCAGTATCCGGGCTGCGTGCCGAAACCGATCCCCTCGTTCGCGTGCATTGGCCGCTGCGCCAGCTACATCCAGGTGTCCGGCAGCAAGATCTGGCAGATGGAGCGGTCCTGCATGTGCTGCCAGGAGTCGGGCGAACGGGAAGGCGTCCGTGTCGCTCTTCTGTCCCAAGGCGAAGAATGGCGAGAAAAAAGTTCCGCAAAGTGTCGACGAAAGCACCCGCGTGGAGTGGNATGTGCCCGACCCGGGCACCCCGGGCCATCGAGGACGGCCGAACGTATTCCCCAAGAGCTGACGTCCTTTGCCCACATAAGGGTACATGACCGGTACTCCAAAGTCGAACTCAATTCACTCGCATAAGTACCCGTTGGGTNGAANGAAGTTAAATCAACCTANANGGATCAACGTCNAAAANCAAGGCTCCGCTCAGAAAAACGGGTCACGGATGACAAGAAATCGTAACACGGACGGTGCAGAAACAATTTCTCACTTTGTG] consensusID : consensus_3942#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 365 fasta sequence [CGGAAATGCCTACGCAAGAATGGCCGAGGGCGTACATACACTCGCATAAGTGGCANGCACATTGAATTACCTTTCAATCTAACGATGAAATCGACCTTCCTGGTGGTGCTGGAGTTGGCGTTCTTCCTTCTGCCCGGACGCGTTCTCTACGCCCAGTAAGGATAGCGAGGACGGTGGGTCACACTACTCCTCAGACGACTGCCAGGTAACGCCCGTCATCCACGTGCTGCAGTATCCGGGCTGCGTGCCGAAACCGATCCCCTCGTTCGCGTGCATTGGCCGCTGCGCCAGCTACNGTCCAGGTGTCCGGNAGCGAGGATCTGGCGAGATGGAGCGGGNCCTGCATGTGCTGGCAGGAGTCGGGC] [+] EMBL BX469714 [CGGAAATGCCTACGCAAGAATGGCCGAGGGCGTACATACACTCGCATAAGTGGCANGCACATTGAATTACCTTTCAATCTAACGATGAAATCGACCTTCCTGGTGGTGCTGGAGTTGGCGTTCTTCCTTCTGCCCGGACGCGTTCTCTACGCCCAGTAAGGATAGCGAGGACGGTGGGTCACACTACTCCTCAGACGACTGCCAGGTAACGCCCGTCATCCACGTGCTGCAGTATCCGGGCTGCGTGCCGAAACCGATCCCCTCGTTCGCGTGCATTGGCCGCTGCGCCAGCTACNGTCCAGGTGTCCGGNAGCGAGGATCTGGCGAGATGGAGCGGGNCCTGCATGTGCTGGCAGGAGTCGGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3942#1 ------------------------------------------------------------ consensus_3942#2 ------------------------------------------------------------ consensus_3942#0 TCATGCACGANTCCCCTGACGGTTATTGTGTGCTACGTGGGGTAAATCTGGTTACGTTGC 60 consensus_3942#1 ------------------------------------------------------------ consensus_3942#2 ------------------------------------------------------------ consensus_3942#0 GCACATACCTGTTGGATAACATTTAACTGAGTGCTTTCAACGGCAGTGAAGTGCGCNTNC 120 consensus_3942#1 ------------------------------------------------------------ consensus_3942#2 ------------------------------------------------------------ consensus_3942#0 TAGTTTAATAGATATGTGGATGTGAAGATNTGGTAGATNATNTAACCAAAAGGATTNATA 180 consensus_3942#1 ------------------------------------------------------------ consensus_3942#2 ------------------------------------------------------------ consensus_3942#0 TTTGGCGACAAAGTTTGCAATGCCATTACTTACCTGGGCAGTGTCCTACTANACCTACTG 240 consensus_3942#1 ------------------------------------------------------------ consensus_3942#2 ------------------------------------------------------------ consensus_3942#0 ACACAACGTACTTNACCCATTANAACGCTGTTTCCACNATTAAAANCATACGCATAACAN 300 consensus_3942#1 ------------------------------------------------------------ consensus_3942#2 ------------------------------------------------------------ consensus_3942#0 TGGGCCAAGCAACCATAGGNNGANAAACGAAACAACACCTAACGANAGNCAATCCACANC 360 consensus_3942#1 ------------------------TCCCCGAGGTTAATCGCTTGGGCTACGGGGTAATCT 36 consensus_3942#2 ------------------------------------------------------------ consensus_3942#0 CTNTNACNCCATGNCAANNNGAANNNGCCAATGGGAAATAANTAGNGNCAGGGATANNAN 420 consensus_3942#1 GGTTACGTTGCGCACATAC-CGTTGGATAACATTTAACTGAGTGCTTTCAACGGCAGTGA 95 consensus_3942#2 ------------------------------------------------------------ consensus_3942#0 NACACGAAAACATGTNACCACGGGAAANAACGAACNNNANAAAGATAATAAAAAGAGACC 480 consensus_3942#1 AGGCGCATTCTAGTTTAATAGATTTGTGGATGTGAAGATTGGTAGATTATTTTCCAAAGA 155 consensus_3942#2 ------------------------------------------------------------ consensus_3942#0 ANACGAAAAGNGGGANAGTAATAAAGAAGTAGGACAANAAGANAGAGGATNAAAAACACA 540 consensus_3942#1 TTTATTGCGAAAGTTGCAAGCCATTCTTCCGGAGGTCTTCTTCCCTCTGCAAACGTCTAC 215 consensus_3942#2 -----------------------------CGGAAATG------CCTACGCAAGAAT--GG 23 consensus_3942#0 AAAACAGACCCTCATANAAGTAAACTAAACAATGGCATACACNGAAAAAAAAGTAACAAC 600 * ** consensus_3942#1 CATAAAGCGTTACATACACTCGCATAAGTGGCAAGCACATTGAATTACCTTT-CAATCTA 274 consensus_3942#2 CCGAGGGCGT-ACATACACTCGCATAAGTGGCANGCACATTGAATTACCTTT-CAATCTA 81 consensus_3942#0 GAANAAAAATTACAANAACAAAANNAAATGGACNACAGGNNNCANTAGCAGAANAANCTC 660 * *** ** ** *** ** * ** * ** ** consensus_3942#1 ACGATGAAATCGACCTTCCTGGTGGTGCTGGAGTTGGCGTTCTTCCTTCTGCCCGGAC-G 333 consensus_3942#2 ACGATGAAATCGACCTTCCTGGTGGTGCTGGAGTTGGCGTTCTTCCTTCTGCCCGGAC-G 140 consensus_3942#0 ATCAANAGAAGAACCCTATGAGAGANNAANTGNNGANCGGTCNTAA--CTGNATGNACCG 718 * * * * *** * * * ** ** * *** * ** * consensus_3942#1 CGTTCTCTACGCCCAG-AAGGATAGCGAGGACGGTGGGTCACACTACTCCTCAGACGACT 392 consensus_3942#2 CGTTCTCTACGCCCAGTAAGGATAGCGAGGACGGTGGGTCACACTACTCCTCAGACGACT 200 consensus_3942#0 ANANNNACAAACACTNCTAAANAAANAANNACTGAAGCAGGGATTAAGAAAAAAANNGCA 778 * * * * * * ** * * * ** * * * consensus_3942#1 GCCAGGTAACGCCCGTCAT--CCACGTGCTGCAGTATCCGGGCTGCGTG----CCGAAAC 446 consensus_3942#2 GCCAGGTAACGCCCGTCAT--CCACGTGCTGCAGTATCCGGGCTGCGTG----CCGAAAC 254 consensus_3942#0 GG-AANNGGTGGNCGNNATGGCTANGGGCCACGAAGTATATACCACACNACACCCAACAC 837 * * * ** ** * * * ** * * * * ** * ** consensus_3942#1 --CGATCCCCTCGTTCGCGTGCATTGGCCGCTGCGCCAGCTACA-TCCAGGTGTCCGGCA 503 consensus_3942#2 --CGATCCCCTCGTTCGCGTGCATTGGCCGCTGCGCCAGCTACNGTCCAGGTGTCCGGNA 312 consensus_3942#0 AACGGTATTCCCGCATGGTCTCGNTGGATGTGGACCTAGGAGTGGGAAAAGCATATGGTG 897 ** * * ** * * *** * * * ** * * * ** consensus_3942#1 GCAAG-ATCTGGC-AGATGGAGCGG-TCCTGCATGTGCTGCCAGGAGTCGGGCGAACGGG 560 consensus_3942#2 GCGAGGATCTGGCGAGATGGAGCGGGNCCTGCATGTGCTGGCAGGAGTCGGGC------- 365 consensus_3942#0 TNACTAAACGANNGAGAN--AACGTCAGTAGCGAGNGNNAGNAATNNCCCGCTAGTCGAG 955 * * *** * ** ** * * * * * consensus_3942#1 AAGGCGTCCGTGTCGCTCTTCTGTCCCAAGGCGAAGAATGGCGAGAAAAAAGTTCCGCAA 620 consensus_3942#2 ------------------------------------------------------------ consensus_3942#0 ANGCAGAGGNAGAGAC------AGCCAGAAGAGTAGAGGGTANNGAANGNGNTAGAAACA 1009 consensus_3942#1 AGTGTCGACGAAAGCACCCGCGTGGAGTGGNATGTGCCCGACCCGGGCACCCCGGGCCAT 680 consensus_3942#2 ------------------------------------------------------------ consensus_3942#0 AGGGGGGGNTACACNACGGGANTNNGCNCGGATGTACTAAAAACANNCTGACAGCCANAA 1069 consensus_3942#1 CGAGGACGGCCGAACGTATTCCCCAAGAGCTGACGTCCTTTGCCCACATAAGGGTACATG 740 consensus_3942#2 ------------------------------------------------------------ consensus_3942#0 CGAAGGGGCNACANNGAACGGNGAAANTGGAGCNGGCATANAAGAANGAAGAGNCANNAC 1129 consensus_3942#1 ACCGGTACTCCAAAGTCGAACTCAATTCACTCGCATAAGTACCCGTTGGGTNGAANGAAG 800 consensus_3942#2 ------------------------------------------------------------ consensus_3942#0 ANANGNACNANANAGGCNGAGNATGTGTGTGGNTAGANGNGCAGGANCTNGCNCCCNATG 1189 consensus_3942#1 TTAAATCAACCTANANGGATCAACGTCNAAAANCAAGGCTCCG--CTCAGAAAAACGGGT 858 consensus_3942#2 ------------------------------------------------------------ consensus_3942#0 NGANGGGGNAGTAAGNGAAANNGAAGTNTCNGNTAGGCCAGGGTANGCCCTGGNACGGGG 1249 consensus_3942#1 CACGGATGACAAGAAATCGTAACACGGACGGTGCAGAAACAATTTCTCACTTTGTG---- 914 consensus_3942#2 ------------------------------------------------------------ consensus_3942#0 CACATACAGAAGCGGAGAGAGANAAGAGCGGAACAGAGNNAGTNTCANAANNACACNCGC 1309 consensus_3942#1 --- consensus_3942#2 --- consensus_3942#0 CGC 1312 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||