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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3942#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1312 fasta sequence
[TCATGCACGANTCCCCTGACGGTTATTGTGTGCTACGTGGGGTAAATCTGGTTACGTTGCGCACATACCTGTTGGATAACATTTAACTGAGTGCTTTCAACGGCAGTGAAGTGCGCNTNCTAGTTTAATAGATATGTGGATGTGAAGATNTGGTAGATNATNTAACCAAAAGGATTNATATTTGGCGACAAAGTTTGCAATGCCATTACTTACCTGGGCAGTGTCCTACTANACCTACTGACACAACGTACTTNACCCATTANAACGCTGTTTCCACNATTAAAANCATACGCATAACANTGGGCCAAGCAACCATAGGNNGANAAACGAAACAACACCTAACGANAGNCAATCCACANCCTNTNACNCCATGNCAANNNGAANNNGCCAATGGGAAATAANTAGNGNCAGGGATANNANNACACGAAAACATGTNACCACGGGAAANAACGAACNNNANAAAGATAATAAAAAGAGACCANACGAAAAGNGGGANAGTAATAAAGAAGTAGGACAANAAGANAGAGGATNAAAAACACAAAAACAGACCCTCATANAAGTAAACTAAACAATGGCATACACNGAAAAAAAAGTAACAACGAANAAAAATTACAANAACAAAANNAAATGGACNACAGGNNNCANTAGCAGAANAANCTCATCAANAGAAGAACCCTATGAGAGANNAANTGNNGANCGGTCNTAACTGNATGNACCGANANNNACAAACACTNCTAAANAAANAANNACTGAAGCAGGGATTAAGAAAAAAANNGCAGGAANNGGTGGNCGNNATGGCTANGGGCCACGAAGTATATACCACACNACACCCAACACAACGGTATTCCCGCATGGTCTCGNTGGATGTGGACCTAGGAGTGGGAAAAGCATATGGTGTNACTAAACGANNGAGANAACGTCAGTAGCGAGNGNNAGNAATNNCCCGCTAGTCGAGANGCAGAGGNAGAGACAGCCAGAAGAGTAGAGGGTANNGAANGNGNTAGAAACAAGGGGGGGNTACACNACGGGANTNNGCNCGGATGTACTAAAAACANNCTGACAGCCANAACGAAGGGGCNACANNGAACGGNGAAANTGGAGCNGGCATANAAGAANGAAGAGNCANNACANANGNACNANANAGGCNGAGNATGTGTGTGGNTAGANGNGCAGGANCTNGCNCCCNATGNGANGGGGNAGTAAGNGAAANNGAAGTNTCNGNTAGGCCAGGGTANGCCCTGGNACGGGGCACATACAGAAGCGGAGAGAGANAAGAGCGGAACAGAGNNAGTNTCANAANNACACNCGCCGC]
[+] EMBL AL696416 [TCATGCACGANTCCCCTGACGGTTATTGTGTGCTACGTGGGGTAAATCTGGTTACGTTGCGCACATACCTGTTGGATAACATTTAACTGAGTGCTTTCAACGGCAGTGAAGTGCGCNTNCTAGTTTAATAGATATGTGGATGTGAAGATNTGGTAGATNATNTAACCAAAAGGATTNATATTTGGCGACAAAGTTTGCAATGCCATTACTTACCTGGGCAGTGTCCTACTANACCTACTGACACAACGTACTTNACCCATTANAACGCTGTTTCCACNATTAAAANCATACGCATAACANTGGGCCAAGCAACCATAGGNNGANAAACGAAACAACACCTAACGANAGNCAATCCACANCCTNTNACNCCATGNCAANNNGAANNNGCCAATGGGAAATAANTAGNGNCAGGGATANNANNACACGAAAACATGTNACCACGGGAAANAACGAACNNNANAAAGATAATAAAAAGAGACCANACGAAAAGNGGGANAGTAATAAAGAAGTAGGACAANAAGANAGAGGATNAAAAACACAAAAACAGACCCTCATANAAGTAAACTAAACAATGGCATACACNGAAAAAAAAGTAACAACGAANAAAAATTACAANAACAAAANNAAATGGACNACAGGNNNCANTAGCAGAANAANCTCATCAANAGAAGAACCCTATGAGAGANNAANTGNNGANCGGTCNTAACTGNATGNACCGANANNNACAAACACTNCTAAANAAANAANNACTGAAGCAGGGATTAAGAAAAAAANNGCAGGAANNGGTGGNCGNNATGGCTANGGGCCACGAAGTATATACCACACNACACCCAACACAACGGTATTCCCGCATGGTCTCGNTGGATGTGGACCTAGGAGTGGGAAAAGCATATGGTGTNACTAAACGANNGAGANAACGTCAGTAGCGAGNGNNAGNAATNNCCCGCTAGTCGAGANGCAGAGGNAGAGACAGCCAGAAGAGTAGAGGGTANNGAANGNGNTAGAAACAAGGGGGGGNTACACNACGGGANTNNGCNCGGATGTACTAAAAACANNCTGACAGCCANAACGAAGGGGCNACANNGAACGGNGAAANTGGAGCNGGCATANAAGAANGAAGAGNCANNACANANGNACNANANAGGCNGAGNATGTGTGTGGNTAGANGNGCAGGANCTNGCNCCCNATGNGANGGGGNAGTAAGNGAAANNGAAGTNTCNGNTAGGCCAGGGTANGCCCTGGNACGGGGCACATACAGAAGCGGAGAGAGANAAGAGCGGAACAGAGNNAGTNTCANAANNACACNCGCCGC]
consensusID : consensus_3942#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 914 fasta sequence
[TCCCCGAGGTTAATCGCTTGGGCTACGGGGTAATCTGGTTACGTTGCGCACATACCGTTGGATAACATTTAACTGAGTGCTTTCAACGGCAGTGAAGGCGCATTCTAGTTTAATAGATTTGTGGATGTGAAGATTGGTAGATTATTTTCCAAAGATTTATTGCGAAAGTTGCAAGCCATTCTTCCGGAGGTCTTCTTCCCTCTGCAAACGTCTACCATAAAGCGTTACATACACTCGCATAAGTGGCAAGCACATTGAATTACCTTTCAATCTAACGATGAAATCGACCTTCCTGGTGGTGCTGGAGTTGGCGTTCTTCCTTCTGCCCGGACGCGTTCTCTACGCCCAGAAGGATAGCGAGGACGGTGGGTCACACTACTCCTCAGACGACTGCCAGGTAACGCCCGTCATCCACGTGCTGCAGTATCCGGGCTGCGTGCCGAAACCGATCCCCTCGTTCGCGTGCATTGGCCGCTGCGCCAGCTACATCCAGGTGTCCGGCAGCAAGATCTGGCAGATGGAGCGGTCCTGCATGTGCTGCCAGGAGTCGGGCGAACGGGAAGGCGTCCGTGTCGCTCTTCTGTCCCAAGGCGAAGAATGGCGAGAAAAAAGTTCCGCAAAGTGTCGACGAAAGCACCCGCGTGGAGTGGNATGTGCCCGACCCGGGCACCCCGGGCCATCGAGGACGGCCGAACGTATTCCCCAAGAGCTGACGTCCTTTGCCCACATAAGGGTACATGACCGGTACTCCAAAGTCGAACTCAATTCACTCGCATAAGTACCCGTTGGGTNGAANGAAGTTAAATCAACCTANANGGATCAACGTCNAAAANCAAGGCTCCGCTCAGAAAAACGGGTCACGGATGACAAGAAATCGTAACACGGACGGTGCAGAAACAATTTCTCACTTTGTG]
[+] EMBL AL932888 [TCCCCGAGGTTAATCGCTTGGGCTACGGGGTAATCTGGTTACGTTGCGCACATACCGTTGGATAACATTTAACTGAGTGCTTTCAACGGCAGTGAAGGCGCATTCTAGTTTAATAGATTTGTGGATGTGAAGATTGGTAGATTATTTTCCAAAGATTTATTGCGAAAGTTGCAAGCCATTCTTCCGGAGGTCTTCTTCCCTCTGCAAACGTCTACCATAAAGCGTTACATACACTCGCATAAGTGGCAAGCACATTGAATTACCTTTCAATCTAACGATGAAATCGACCTTCCTGGTGGTGCTGGAGTTGGCGTTCTTCCTTCTGCCCGGACGCGTTCTCTACGCCCAGAAGGATAGCGAGGACGGTGGGTCACACTACTCCTCAGACGACTGCCAGGTAACGCCCGTCATCCACGTGCTGCAGTATCCGGGCTGCGTGCCGAAACCGATCCCCTCGTTCGCGTGCATTGGCCGCTGCGCCAGCTACATCCAGGTGTCCGGCAGCAAGATCTGGCAGATGGAGCGGTCCTGCATGTGCTGCCAGGAGTCGGGCGAACGGGAAGGCGTCCGTGTCGCTCTTCTGTCCCAAGGCGAAGAATGGCGAGAAAAAAGTTCCGCAAAGTGTCGACGAAAGCACCCGCGTGGAGTGGNATGTGCCCGACCCGGGCACCCCGGGCCATCGAGGACGGCCGAACGTATTCCCCAAGAGCTGACGTCCTTTGCCCACATAAGGGTACATGACCGGTACTCCAAAGTCGAACTCAATTCACTCGCATAAGTACCCGTTGGGTNGAANGAAGTTAAATCAACCTANANGGATCAACGTCNAAAANCAAGGCTCCGCTCAGAAAAACGGGTCACGGATGACAAGAAATCGTAACACGGACGGTGCAGAAACAATTTCTCACTTTGTG]
consensusID : consensus_3942#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 365 fasta sequence
[CGGAAATGCCTACGCAAGAATGGCCGAGGGCGTACATACACTCGCATAAGTGGCANGCACATTGAATTACCTTTCAATCTAACGATGAAATCGACCTTCCTGGTGGTGCTGGAGTTGGCGTTCTTCCTTCTGCCCGGACGCGTTCTCTACGCCCAGTAAGGATAGCGAGGACGGTGGGTCACACTACTCCTCAGACGACTGCCAGGTAACGCCCGTCATCCACGTGCTGCAGTATCCGGGCTGCGTGCCGAAACCGATCCCCTCGTTCGCGTGCATTGGCCGCTGCGCCAGCTACNGTCCAGGTGTCCGGNAGCGAGGATCTGGCGAGATGGAGCGGGNCCTGCATGTGCTGGCAGGAGTCGGGC]
[+] EMBL BX469714 [CGGAAATGCCTACGCAAGAATGGCCGAGGGCGTACATACACTCGCATAAGTGGCANGCACATTGAATTACCTTTCAATCTAACGATGAAATCGACCTTCCTGGTGGTGCTGGAGTTGGCGTTCTTCCTTCTGCCCGGACGCGTTCTCTACGCCCAGTAAGGATAGCGAGGACGGTGGGTCACACTACTCCTCAGACGACTGCCAGGTAACGCCCGTCATCCACGTGCTGCAGTATCCGGGCTGCGTGCCGAAACCGATCCCCTCGTTCGCGTGCATTGGCCGCTGCGCCAGCTACNGTCCAGGTGTCCGGNAGCGAGGATCTGGCGAGATGGAGCGGGNCCTGCATGTGCTGGCAGGAGTCGGGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3942#1 ------------------------------------------------------------
consensus_3942#2 ------------------------------------------------------------
consensus_3942#0 TCATGCACGANTCCCCTGACGGTTATTGTGTGCTACGTGGGGTAAATCTGGTTACGTTGC 60
consensus_3942#1 ------------------------------------------------------------
consensus_3942#2 ------------------------------------------------------------
consensus_3942#0 GCACATACCTGTTGGATAACATTTAACTGAGTGCTTTCAACGGCAGTGAAGTGCGCNTNC 120
consensus_3942#1 ------------------------------------------------------------
consensus_3942#2 ------------------------------------------------------------
consensus_3942#0 TAGTTTAATAGATATGTGGATGTGAAGATNTGGTAGATNATNTAACCAAAAGGATTNATA 180
consensus_3942#1 ------------------------------------------------------------
consensus_3942#2 ------------------------------------------------------------
consensus_3942#0 TTTGGCGACAAAGTTTGCAATGCCATTACTTACCTGGGCAGTGTCCTACTANACCTACTG 240
consensus_3942#1 ------------------------------------------------------------
consensus_3942#2 ------------------------------------------------------------
consensus_3942#0 ACACAACGTACTTNACCCATTANAACGCTGTTTCCACNATTAAAANCATACGCATAACAN 300
consensus_3942#1 ------------------------------------------------------------
consensus_3942#2 ------------------------------------------------------------
consensus_3942#0 TGGGCCAAGCAACCATAGGNNGANAAACGAAACAACACCTAACGANAGNCAATCCACANC 360
consensus_3942#1 ------------------------TCCCCGAGGTTAATCGCTTGGGCTACGGGGTAATCT 36
consensus_3942#2 ------------------------------------------------------------
consensus_3942#0 CTNTNACNCCATGNCAANNNGAANNNGCCAATGGGAAATAANTAGNGNCAGGGATANNAN 420
consensus_3942#1 GGTTACGTTGCGCACATAC-CGTTGGATAACATTTAACTGAGTGCTTTCAACGGCAGTGA 95
consensus_3942#2 ------------------------------------------------------------
consensus_3942#0 NACACGAAAACATGTNACCACGGGAAANAACGAACNNNANAAAGATAATAAAAAGAGACC 480
consensus_3942#1 AGGCGCATTCTAGTTTAATAGATTTGTGGATGTGAAGATTGGTAGATTATTTTCCAAAGA 155
consensus_3942#2 ------------------------------------------------------------
consensus_3942#0 ANACGAAAAGNGGGANAGTAATAAAGAAGTAGGACAANAAGANAGAGGATNAAAAACACA 540
consensus_3942#1 TTTATTGCGAAAGTTGCAAGCCATTCTTCCGGAGGTCTTCTTCCCTCTGCAAACGTCTAC 215
consensus_3942#2 -----------------------------CGGAAATG------CCTACGCAAGAAT--GG 23
consensus_3942#0 AAAACAGACCCTCATANAAGTAAACTAAACAATGGCATACACNGAAAAAAAAGTAACAAC 600
* **
consensus_3942#1 CATAAAGCGTTACATACACTCGCATAAGTGGCAAGCACATTGAATTACCTTT-CAATCTA 274
consensus_3942#2 CCGAGGGCGT-ACATACACTCGCATAAGTGGCANGCACATTGAATTACCTTT-CAATCTA 81
consensus_3942#0 GAANAAAAATTACAANAACAAAANNAAATGGACNACAGGNNNCANTAGCAGAANAANCTC 660
* *** ** ** *** ** * ** * ** **
consensus_3942#1 ACGATGAAATCGACCTTCCTGGTGGTGCTGGAGTTGGCGTTCTTCCTTCTGCCCGGAC-G 333
consensus_3942#2 ACGATGAAATCGACCTTCCTGGTGGTGCTGGAGTTGGCGTTCTTCCTTCTGCCCGGAC-G 140
consensus_3942#0 ATCAANAGAAGAACCCTATGAGAGANNAANTGNNGANCGGTCNTAA--CTGNATGNACCG 718
* * * * *** * * * ** ** * *** * ** *
consensus_3942#1 CGTTCTCTACGCCCAG-AAGGATAGCGAGGACGGTGGGTCACACTACTCCTCAGACGACT 392
consensus_3942#2 CGTTCTCTACGCCCAGTAAGGATAGCGAGGACGGTGGGTCACACTACTCCTCAGACGACT 200
consensus_3942#0 ANANNNACAAACACTNCTAAANAAANAANNACTGAAGCAGGGATTAAGAAAAAAANNGCA 778
* * * * * * ** * * * ** * * *
consensus_3942#1 GCCAGGTAACGCCCGTCAT--CCACGTGCTGCAGTATCCGGGCTGCGTG----CCGAAAC 446
consensus_3942#2 GCCAGGTAACGCCCGTCAT--CCACGTGCTGCAGTATCCGGGCTGCGTG----CCGAAAC 254
consensus_3942#0 GG-AANNGGTGGNCGNNATGGCTANGGGCCACGAAGTATATACCACACNACACCCAACAC 837
* * * ** ** * * * ** * * * * ** * **
consensus_3942#1 --CGATCCCCTCGTTCGCGTGCATTGGCCGCTGCGCCAGCTACA-TCCAGGTGTCCGGCA 503
consensus_3942#2 --CGATCCCCTCGTTCGCGTGCATTGGCCGCTGCGCCAGCTACNGTCCAGGTGTCCGGNA 312
consensus_3942#0 AACGGTATTCCCGCATGGTCTCGNTGGATGTGGACCTAGGAGTGGGAAAAGCATATGGTG 897
** * * ** * * *** * * * ** * * * **
consensus_3942#1 GCAAG-ATCTGGC-AGATGGAGCGG-TCCTGCATGTGCTGCCAGGAGTCGGGCGAACGGG 560
consensus_3942#2 GCGAGGATCTGGCGAGATGGAGCGGGNCCTGCATGTGCTGGCAGGAGTCGGGC------- 365
consensus_3942#0 TNACTAAACGANNGAGAN--AACGTCAGTAGCGAGNGNNAGNAATNNCCCGCTAGTCGAG 955
* * *** * ** ** * * * * *
consensus_3942#1 AAGGCGTCCGTGTCGCTCTTCTGTCCCAAGGCGAAGAATGGCGAGAAAAAAGTTCCGCAA 620
consensus_3942#2 ------------------------------------------------------------
consensus_3942#0 ANGCAGAGGNAGAGAC------AGCCAGAAGAGTAGAGGGTANNGAANGNGNTAGAAACA 1009
consensus_3942#1 AGTGTCGACGAAAGCACCCGCGTGGAGTGGNATGTGCCCGACCCGGGCACCCCGGGCCAT 680
consensus_3942#2 ------------------------------------------------------------
consensus_3942#0 AGGGGGGGNTACACNACGGGANTNNGCNCGGATGTACTAAAAACANNCTGACAGCCANAA 1069
consensus_3942#1 CGAGGACGGCCGAACGTATTCCCCAAGAGCTGACGTCCTTTGCCCACATAAGGGTACATG 740
consensus_3942#2 ------------------------------------------------------------
consensus_3942#0 CGAAGGGGCNACANNGAACGGNGAAANTGGAGCNGGCATANAAGAANGAAGAGNCANNAC 1129
consensus_3942#1 ACCGGTACTCCAAAGTCGAACTCAATTCACTCGCATAAGTACCCGTTGGGTNGAANGAAG 800
consensus_3942#2 ------------------------------------------------------------
consensus_3942#0 ANANGNACNANANAGGCNGAGNATGTGTGTGGNTAGANGNGCAGGANCTNGCNCCCNATG 1189
consensus_3942#1 TTAAATCAACCTANANGGATCAACGTCNAAAANCAAGGCTCCG--CTCAGAAAAACGGGT 858
consensus_3942#2 ------------------------------------------------------------
consensus_3942#0 NGANGGGGNAGTAAGNGAAANNGAAGTNTCNGNTAGGCCAGGGTANGCCCTGGNACGGGG 1249
consensus_3942#1 CACGGATGACAAGAAATCGTAACACGGACGGTGCAGAAACAATTTCTCACTTTGTG---- 914
consensus_3942#2 ------------------------------------------------------------
consensus_3942#0 CACATACAGAAGCGGAGAGAGANAAGAGCGGAACAGAGNNAGTNTCANAANNACACNCGC 1309
consensus_3942#1 ---
consensus_3942#2 ---
consensus_3942#0 CGC 1312
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||