cluster # 3944

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Anopheles gambiae
cluster # 3944 cluster # 3944 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3944#0 length = 1001 sequences # 2

consensus_3944#1 length = 346 sequences # 1

consensusID : consensus_3944#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1001
fasta sequence

                              [CCGCCCACGCGTCCGGCGATGGTGGCGGTGGAGGAGGCGGTGGCGGTGGCGGCGGTGGTCCCAAGCACAAGAAGATTCTGTCCGCCCCGATCAATCTGGGCGAGATGGCGGCCACGCAGGAGATCGCGAACGACGACATACAGAGCATCTGGGTGGTGCAGCGGGACGACAGCCTGAAGGTGGACAGCAAAAAGCTGGAAAAGGCGGAAGCGAAGCGCCAGCAAAAGCTGGAGAAGCGGCAGGAAGTGAAGGCGGCGGCGGCGGCCACCGCAGCGACTGCGCCGGTCCTGCAGACGGCCACCGCCTCGCAGGTGATCAGCAAGAAGGACAACAAAATGGAATCGAAGGGCACGAACCGGTCGATGGACATACGGATCGACAACTTCGACGTGTCGTTCGGCGACAAGACGCTGCTGCAGAACGCTGATTTGCTGCTGGCTTCCGGCCGGCGGTACGGGTTCGTCGGGCGGAACGGGCTGGGCAAGACGACGCTGCTGAAGATGATTTCCGGCAAGCAGCTGCAAATCCCCAGCCACATCTCGGTGCTGCACGTCGAGCAGGAGGTGGTGGGCGACGATACGACTGCCCTGGACAGCGTGCTCGAGGTCGACACGGTGCGGACGGAGCTGTTGCAGCGCGAGCGGGACCTGAACGCGCAGATAGCGGCCGGCTCGACCGATGCCAACCTTGGCAACGAGCTGTCCGAGGTGTACAATCAACTGCAGACGATCGAGGCGGACAAAGCGCCGGCCCGTGCCTCCATCATCCTGAACGGGTTGGGCTTCACGAAGGAGATGCAGGCCCGTGCGACCCGTACCTTCTCGGGCGGCTGGCGTATGCGACTCGCGCTCGCCCGGGCCCTCTTCTCCAAGCCCGAGCTGCTGCTGCTCGACGAACCGACGAACATGTTGGACATCAAGGCAATCATCTGGCTGGAGAACTATCTGCAGAACTGGCCCACGACGCTGCTGGTCGTGTCGCACGACCGGAACTTCCTCGAC]

[+] EMBL BM650041             [CCGCCCACGCGTCCGGCGATGGTGGCGGTGGAGGAGGCGGTGGCGGTGGCGGCGGTGGTCCCAAGCACAAGAAGATTCTGTCCGCCCCGATCAATCTGGGCGAGATGGCGGCCACGCAGGAGATCGCGAACGACGACATACAGAGCATCTGGGTGGTGCAGCGGGACGACAGCCTGAAGGTGGACAGCAAAAAGCTGGAAAAGGCGGAAGCGAAGCGCCAGCAAAAGCTGGAGAAGCGGCAGGAAGTGAAGGCGGCGGCGGCGGCCACCGCAGCGACTGCGCCGGTCCTGCAGACGGCCACCGCCTCGCAGGTGATCAGCAAGAAGGACAACAAAATGGAATCGAAGGGCACGAACCGGTCGATGGACATACGGATCGACAACTTCGACGTGTCGTTCGGCGACAAGACGCTGCTGCAGAACGCTGATTTGCTGCTGGCTTCCGGCCGGCGGTACGGGTTCGTCGGGCGGAACGGGCTGGGCAAGACGACGCTGCTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BM629706             [                                                                                                                                                                                                                                                                                                                                                                                                                                                            ccgGGCGGTACGGGTTCGTCGGGCGGAACGGGCTGGGCAAGACGACGCTGCTGAAGATGATTTCCGGCAAGCAGCTGCAAATCCCCAGCCACATCTCGGTGCTGCACGTCGAGCAGGAGGTGGTGGGCGACGATACGACTGCCCTGGACAGCGTGCTCGAGGTCGACACGGTGCGGACGGAGCTGTTGCAGCGCGAGCGGGACCTGAACGCGCAGATAGCGGCCGGCTCGACCGATGCCAACCTTGGCAACGAGCTGTCCGAGGTGTACAATCAACTGCAGACGATCGAGGCGGACAAAGCGCCGGCCCGTGCCTCCATCATCCTGAACGGGTTGGGCTTCACGAAGGAGATGCAGGCCCGTGCGACCCGTACCTTCTCGGGCGGCTGGCGTATGCGACTCGCGCTCGCCCGGGCCCTCTTCTCCAAGCCCGAGCTGCTGCTGCTCGACGAACCGACGAACATGTTGGACATCAAGGCAATCATCTGGCTGGAGAACTATCTGCAGAACTGGCCCACGACGCTGCTGGTCGTGTCGCACGACCGGAACTTCCTCGAC]




>consensus_3944#0
CCGCCCACGCGTCCGGCGATGGTGGCGGTGGAGGAGGCGGTGGCGGTGGCGGCGGTGGTC
CCAAGCACAAGAAGATTCTGTCCGCCCCGATCAATCTGGGCGAGATGGCGGCCACGCAGG
AGATCGCGAACGACGACATACAGAGCATCTGGGTGGTGCAGCGGGACGACAGCCTGAAGG
TGGACAGCAAAAAGCTGGAAAAGGCGGAAGCGAAGCGCCAGCAAAAGCTGGAGAAGCGGC
AGGAAGTGAAGGCGGCGGCGGCGGCCACCGCAGCGACTGCGCCGGTCCTGCAGACGGCCA
CCGCCTCGCAGGTGATCAGCAAGAAGGACAACAAAATGGAATCGAAGGGCACGAACCGGT
CGATGGACATACGGATCGACAACTTCGACGTGTCGTTCGGCGACAAGACGCTGCTGCAGA
ACGCTGATTTGCTGCTGGCTTCCGGCCGGCGGTACGGGTTCGTCGGGCGGAACGGGCTGG
GCAAGACGACGCTGCTGAAGATGATTTCCGGCAAGCAGCTGCAAATCCCCAGCCACATCT
CGGTGCTGCACGTCGAGCAGGAGGTGGTGGGCGACGATACGACTGCCCTGGACAGCGTGC
TCGAGGTCGACACGGTGCGGACGGAGCTGTTGCAGCGCGAGCGGGACCTGAACGCGCAGA
TAGCGGCCGGCTCGACCGATGCCAACCTTGGCAACGAGCTGTCCGAGGTGTACAATCAAC
TGCAGACGATCGAGGCGGACAAAGCGCCGGCCCGTGCCTCCATCATCCTGAACGGGTTGG
GCTTCACGAAGGAGATGCAGGCCCGTGCGACCCGTACCTTCTCGGGCGGCTGGCGTATGC
GACTCGCGCTCGCCCGGGCCCTCTTCTCCAAGCCCGAGCTGCTGCTGCTCGACGAACCGA
CGAACATGTTGGACATCAAGGCAATCATCTGGCTGGAGAACTATCTGCAGAACTGGCCCA
CGACGCTGCTGGTCGTGTCGCACGACCGGAACTTCCTCGAC

consensusID : consensus_3944#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 346
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGAGATTCTGTCCGCCCCGATCAATCTGGGCGAGATGGCGGCCACGCAGGAGATCGCGAACGACGACATACAGAGCATCTGGGTGGTGCAGCGGGACGACAGCCTGAAGGTGGACAGCAAAAAGCTGGAAAAGGCGGAAGCGAAGCGCCAGCAGAAGCTGGAGAAGCGGCAGGAGGTGAAAGGCGGCGGCGGCGGCCACCGCAGCGACGGCGCCGGTCCTGCAGACGGCCACCCGCCTCGCAGGTGATCAGCAAGAAGGACAACAAAATGGAATCGAAGGGCACGAACCGGTCGATG]

[+] EMBL BM599706             [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGAGATTCTGTCCGCCCCGATCAATCTGGGCGAGATGGCGGCCACGCAGGAGATCGCGAACGACGACATACAGAGCATCTGGGTGGTGCAGCGGGACGACAGCCTGAAGGTGGACAGCAAAAAGCTGGAAAAGGCGGAAGCGAAGCGCCAGCAGAAGCTGGAGAAGCGGCAGGAGGTGAAAGGCGGCGGCGGCGGCCACCGCAGCGACGGCGCCGGTCCTGCAGACGGCCACCCGCCTCGCAGGTGATCAGCAAGAAGGACAACAAAATGGAATCGAAGGGCACGAACCGGTCGATG]




>consensus_3944#1
CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGAGATTCTGT
CCGCCCCGATCAATCTGGGCGAGATGGCGGCCACGCAGGAGATCGCGAACGACGACATAC
AGAGCATCTGGGTGGTGCAGCGGGACGACAGCCTGAAGGTGGACAGCAAAAAGCTGGAAA
AGGCGGAAGCGAAGCGCCAGCAGAAGCTGGAGAAGCGGCAGGAGGTGAAAGGCGGCGGCG
GCGGCCACCGCAGCGACGGCGCCGGTCCTGCAGACGGCCACCCGCCTCGCAGGTGATCAG
CAAGAAGGACAACAAAATGGAATCGAAGGGCACGAACCGGTCGATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3944#0      CCGCCCACGCGTCCGGCGATGGTGGCGGTGGAGGAGGCGGTGGCGGTGGCGGCGGTGGTC 60
consensus_3944#1      CCGCCCACGCGTCCGCCCACG----------------CGTCCGCCCACGCGTCCG----C 40
                      *************** * * *                **   **    *** * *    *

consensus_3944#0      CCAAGCACAAGAAGATTCTGTCCGCCCCGATCAATCTGGGCGAGATGGCGGCCACGCAGG 120
consensus_3944#1      CCACGCGTCCGA-GATTCTGTCCGCCCCGATCAATCTGGGCGAGATGGCGGCCACGCAGG 99
                      *** **    ** ***********************************************

consensus_3944#0      AGATCGCGAACGACGACATACAGAGCATCTGGGTGGTGCAGCGGGACGACAGCCTGAAGG 180
consensus_3944#1      AGATCGCGAACGACGACATACAGAGCATCTGGGTGGTGCAGCGGGACGACAGCCTGAAGG 159
                      ************************************************************

consensus_3944#0      TGGACAGCAAAAAGCTGGAAAAGGCGGAAGCGAAGCGCCAGCAAAAGCTGGAGAAGCGGC 240
consensus_3944#1      TGGACAGCAAAAAGCTGGAAAAGGCGGAAGCGAAGCGCCAGCAGAAGCTGGAGAAGCGGC 219
                      ******************************************* ****************

consensus_3944#0      AGGAAGTGAA-GGCGGCGGCGGCGGCCACCGCAGCGACTGCGCCGGTCCTGCAGACGGCC 299
consensus_3944#1      AGGAGGTGAAAGGCGGCGGCGGCGGCCACCGCAGCGACGGCGCCGGTCCTGCAGACGGCC 279
                      **** ***** *************************** *********************

consensus_3944#0      ACC-GCCTCGCAGGTGATCAGCAAGAAGGACAACAAAATGGAATCGAAGGGCACGAACCG 358
consensus_3944#1      ACCCGCCTCGCAGGTGATCAGCAAGAAGGACAACAAAATGGAATCGAAGGGCACGAACCG 339
                      *** ********************************************************

consensus_3944#0      GTCGATGGACATACGGATCGACAACTTCGACGTGTCGTTCGGCGACAAGACGCTGCTGCA 418
consensus_3944#1      GTCGATG----------------------------------------------------- 346
                      *******                                                     

consensus_3944#0      GAACGCTGATTTGCTGCTGGCTTCCGGCCGGCGGTACGGGTTCGTCGGGCGGAACGGGCT 478
consensus_3944#1      ------------------------------------------------------------
                                                                                  

consensus_3944#0      GGGCAAGACGACGCTGCTGAAGATGATTTCCGGCAAGCAGCTGCAAATCCCCAGCCACAT 538
consensus_3944#1      ------------------------------------------------------------
                                                                                  

consensus_3944#0      CTCGGTGCTGCACGTCGAGCAGGAGGTGGTGGGCGACGATACGACTGCCCTGGACAGCGT 598
consensus_3944#1      ------------------------------------------------------------
                                                                                  

consensus_3944#0      GCTCGAGGTCGACACGGTGCGGACGGAGCTGTTGCAGCGCGAGCGGGACCTGAACGCGCA 658
consensus_3944#1      ------------------------------------------------------------
                                                                                  

consensus_3944#0      GATAGCGGCCGGCTCGACCGATGCCAACCTTGGCAACGAGCTGTCCGAGGTGTACAATCA 718
consensus_3944#1      ------------------------------------------------------------
                                                                                  

consensus_3944#0      ACTGCAGACGATCGAGGCGGACAAAGCGCCGGCCCGTGCCTCCATCATCCTGAACGGGTT 778
consensus_3944#1      ------------------------------------------------------------
                                                                                  

consensus_3944#0      GGGCTTCACGAAGGAGATGCAGGCCCGTGCGACCCGTACCTTCTCGGGCGGCTGGCGTAT 838
consensus_3944#1      ------------------------------------------------------------
                                                                                  

consensus_3944#0      GCGACTCGCGCTCGCCCGGGCCCTCTTCTCCAAGCCCGAGCTGCTGCTGCTCGACGAACC 898
consensus_3944#1      ------------------------------------------------------------
                                                                                  

consensus_3944#0      GACGAACATGTTGGACATCAAGGCAATCATCTGGCTGGAGAACTATCTGCAGAACTGGCC 958
consensus_3944#1      ------------------------------------------------------------
                                                                                  

consensus_3944#0      CACGACGCTGCTGGTCGTGTCGCACGACCGGAACTTCCTCGAC 1001
consensus_3944#1      -------------------------------------------