These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3947#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 969 fasta sequence [AGCAGAATTGCCCGAGGTAAACACCAAGTCGGTACTCGATCAATCAATACGAATACTACAGGCCATGGTCGACATTAGTGCGGAAAGGGGTTGGCTTGCAACTACCCTGCGGATACAGCAGCTGATGCAGTGCATCATCCAGGCCCGCTGGCTAGACGATCCGGTAGTCATGACGCTCCCGAACGTGGAAGCCTATAATGCGGCTATCTTCAGCCAGATAAAAACAGACTTACCATTCCTTGACGCTTCCGGCGTTGAAAGAAAAGNTGCAACGGAAAGTACGAGAATTTGGCCGCGACGTTAAGGCAGGAGTTTGAGGAGCCTGGAAATTGAGCAGATTTACAAGGTGATATGTGAGCTGCCGTCGCTGAACGTGCAGATTTACCGTGCGTTGGACCGTACGGCAAGGATGGGGACGTGGACCGGCCCTGTCCAGCCAGCCGATAGAGCCGTGACCAGTGGATCAGAGCTGTACGCCGCATCAGGAGTATAGTGGTGTGCGTTGCAGCTGAATACGAGCTGGGGAGGCGTATCGAGCTCGCTCAAACATTACACTGTCACCAAGNTCACCCAAGGGCAAGGGACAGANGGGGCCTGAGTTCCCATAANCGCACGGCCAACCAAGACGGANGNCAANACTGGNTGGGCGNGNCTCAGACAACGGGCCTGAGGTNCTAAACCCGGCAGGACCACCGAACAAAGTAACNTCCAAANCANAAGGNGTGCNATATACAATNGCNACCCNNNCGANGCAAATAAACAGAACGGTAGNNCACTAAANAAACCACAGTGNANACCNATGACAAACACGAACAGGGATAAAAANAAAGAGGATCGNAACTAAACAANNAAAAACGACANACAGAGANAAANNGGTNGGCCACCAACAGCCAGGCNANGGACAAACAGAATGGCAANTAGAGAAAAGCACAATNNAAACAGAAANACGGNACAGGGGGAACNCNGNGG] [+] EMBL AL696457 [AGCAGAATTGCCCGAGGTAAACACCAAGTCGGTACTCGATCAATCAATACGAATACTACAGGCCATGGTCGACATTAGTGCGGAAAGGGGTTGGCTTGCAACTACCCTGCGGATACAGCAGCTGATGCAGTGCATCATCCAGGCCCGCTGGCTAGACGATCCGGTAGTCATGACGCTCCCGAACGTGGAAGCCTATAATGCGGCTATCTTCAGCCAGATAAAAACAGACTTACCATTCCTTGACGCTTCCGGCGTTGAAAGAAAAGNTGCAACGGAAAGTACGAGAATTTGGCCGCGACGTTAAGGCAGGAGTTTGAGGAGCCTGGAAATTGAGCAGATTTACAAGGTGATATGTGAGCTGCCGTCGCTGAACGTGCAGATTTACCGTGCGTTGGACCGTACGGCAAGGATGGGGACGTGGACCGGCCCTGTCCAGCCAGCCGATAGAGCCGTGACCAGTGGATCAGAGCTGTACGCCGCATCAGGAGTATAGTGGTGTGCGTTGCAGCTGAATACGAGCTGGGGAGGCGTATCGAGCTCGCTCAAACATTACACTGTCACCAAGNTCACCCAAGGGCAAGGGACAGANGGGGCCTGAGTTCCCATAANCGCACGGCCAACCAAGACGGANGNCAANACTGGNTGGGCGNGNCTCAGACAACGGGCCTGAGGTNCTAAACCCGGCAGGACCACCGAACAAAGTAACNTCCAAANCANAAGGNGTGCNATATACAATNGCNACCCNNNCGANGCAAATAAACAGAACGGTAGNNCACTAAANAAACCACAGTGNANACCNATGACAAACACGAACAGGGATAAAAANAAAGAGGATCGNAACTAAACAANNAAAAACGACANACAGAGANAAANNGGTNGGCCACCAACAGCCAGGCNANGGACAAACAGAATGGCAANTAGAGAAAAGCACAATNNAAACAGAAANACGGNACAGGGGGAACNCNGNGG] consensusID : consensus_3947#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 746 fasta sequence [ACTACTTCCTCTCGGAGCTGATTGAAACCGTGCTCGATAAGCTGATTCGGGCCGGGTGTGTCTTGCTGGAGGAAGATAACAGATCGCTGATGGCGACATCGATGGGGCGCATTTCCTCGTACTATTACCTATCCCACATCACCATGCGTCACTTTGCTGATACGCTACGGCACGACATGAGCATGGAAGAGTTGCTGCGCGCGATGGCAGATGCGGCCGAGTTCGAGGAGCATCCTGTGCGCCACAATGAAGATTTGTATAATGCTGATTTAGCCAAACTGTGTCCCCTGAAGGTAGATCCACTATCGGTGGACAATCCGCACACTTATCGCGCTTGCCGCTACCGAACTCTGATTACNCGCACAGACACCAAGTCGGTACTCGATCAATCAATACGAATACTACAGGCCATGGTCGACATTAGTGCGGAAAGGGGTTGGCTTGCAACTACCCTGCGGATACAGCAGCTGATGCAGTGCATCATCCAGGNNCGCTGNGCTAGACGATCCGGTAGTCATGACGCTCCCGNNCGTGGGAAGCCTATNATGCGGCTATCTTCAGCCAGATAAAAACAGACTTACCATTCCTGACGCTTCCGGCGTTGAAAGAAAAATGCAACCGGAAGTACGAGAATTTGGCCGCGACGTTAAGGCAGGAGTTTGAGGAGCCGGAAATTGAGCAGATTTACAAGGTGATATGTGAGCTGCCGTCGCTGAACGTGCAGATTTCCGTGCGTGGACCGTACN] [+] EMBL BX619429 [ACTACTTCCTCTCGGAGCTGATTGAAACCGTGCTCGATAAGCTGATTCGGGCCGGGTGTGTCTTGCTGGAGGAAGATAACAGATCGCTGATGGCGACATCGATGGGGCGCATTTCCTCGTACTATTACCTATCCCACATCACCATGCGTCACTTTGCTGATACGCTACGGCACGACATGAGCATGGAAGAGTTGCTGCGCGCGATGGCAGATGCGGCCGAGTTCGAGGAGCATCCTGTGCGCCACAATGAAGATTTGTATAATGCTGATTTAGCCAAACTGTGTCCCCTGAAGGTAGATCCACTATCGGTGGACAATCCGCACACTTATCGCGCTTGCCGCTACCGAACTCTGATTACNCGCACAGACACCAAGTCGGTACTCGATCAATCAATACGAATACTACAGGCCATGGTCGACATTAGTGCGGAAAGGGGTTGGCTTGCAACTACCCTGCGGATACAGCAGCTGATGCAGTGCATCATCCAGGNNCGCTGNGCTAGACGATCCGGTAGTCATGACGCTCCCGNNCGTGGGAAGCCTATNATGCGGCTATCTTCAGCCAGATAAAAACAGACTTACCATTCCTGACGCTTCCGG ] [+] EMBL BX621138 [ CTTCCTCTCGGAGCTGATTGAAACCGTGCTCGATAAGCTGATTCGGGCCGGGTGTGTCTTGCTGGAGGAAGATAACAGATCGCTGATGGCGACATCGATGGGGCGCATTTCCTCGTACTATTACCTATCCCACATCACCATGCGTCACTTTGCTGATACGCTACGGCACGACATGAGCATGGAAGAGTTGCTGCGCGCGATGGCAGATGCGGCCGAGTTCGAGGAGCATCCTGTGCGCCACAATGAAGATTTGTATAATGCTGATTTAGCCAAACTGTGTCCCCTGAAGGTAGATCCACTATCGGTGGACAATCCGCACACTTATCGCGCTTGCCGCTACCGAACTCTGATTAC GGCACAGACACCAAGTCGGTACTCGATCAATCAATACGAATACTACAGGCCATGGTCGACATTAGTGCGGAAAGGGGTTGGCTTGCAACTACCCTGCGGATACAGCAGCTGATGCAGTGCATCATCCAGGCCCGCTG GCTAGACGATCCGGTAGTCATGACGCTCCCGAACGT GGAAGCCTATAATGCGGCTATCTTCAGCCAGATAAAAACAGACTTACCATTCCTGACGCTTCCGGCGTTGAAAGAAAAATGCAACCGGAAGTACGAGAATTTGGCCGCGACGTTAAGGCAGGAGTTTGAGGAGCCGGAAATTGAGCAGATTTACAAGGTGATATGTGAGCTGCCGTCGCTGAACGTGCAGATTTCCGTGCGTGGACCGTACN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3947#0 AGCAGAATTGCCCGAGGTAAACACCAAGTCGGTACTCGATCAATCAATACGAATACTACA 60 consensus_3947#1 ------------------------------------------------------------ consensus_3947#0 GGCCATGGTCGACATTAGTGCGGAAAGGGGTTGGCTTGCAACTACCCTGCGGATACAGCA 120 consensus_3947#1 ------------------------------------------------------------ consensus_3947#0 GCTGATGCAGTGCATCATCCAGGCCCGCTGGCTAGACGATCCGGTAGTCATGACGCTCCC 180 consensus_3947#1 ------------------------------------------------------------ consensus_3947#0 GAACGTGGAAGCCTATAATGCGGCTATCTTCAGCCAGATAAAAACAGACTTACCATTCCT 240 consensus_3947#1 ----------------ACTACTTCCTCTCGGAGCTGATTGAAACCGTGCTCGATAA---- 40 * * * * *** * *** * ** * consensus_3947#0 TGACGCTTCCGGCGTTGAAAGAAAAGNTGCAACGGAAAGTACGAGAAT-TTGGCCGCGAC 299 consensus_3947#1 -GCTGATTCGGGCCGGGTGTGTCTTGCTGGA--GGAAGATAACAGATCGCTGATGGCGAC 97 * * *** *** * * * ** * **** ** *** ** ***** consensus_3947#0 GTTAAGGCAGGAGTTTGAGGAGCCTGGAAATTGAGCAGATTTACAAGGTGATATGTGAGC 359 consensus_3947#1 ATCGATGGGGCGCATTTC----CTCGTACTATTACCTATCCCACATCACCATGCGTCA-- 151 * * * * ** * * * * * * *** ** ** * consensus_3947#0 TGCCGTCGCTGA-ACGTGCAGATTTACCGTGCGTTGGACCGTACGGCAAGGATGGGGACG 418 consensus_3947#1 ---CTTTGCTGATACGCTACGGCACGACATGAGCATGGAAGAGTTGC-----TGCGCGCG 203 * * ***** *** * * ** * * * ** ** * ** consensus_3947#0 TGGACCGGCCCTGTCCAGCCAGCCGATAGAGCCGTGACCAGTGGATCAGAGCTGTACGCC 478 consensus_3947#1 ATGGCAGATGCGGCCGAGTTCGAGGAGCATCCTGTGCGCCACAATGAAGATTTGTATAAT 263 * * * * * * ** * ** * *** * *** **** consensus_3947#0 GCATCAGGAGTATAGTGGTGTGCGTTGCAGCTGAATACGAGCTGGGGAGGCGTATCGAGC 538 consensus_3947#1 GCTGATTTAGCCAAACTGTGTCCCCTGAAGGTAGATCCACTATCGGTGGACAATCCGCAC 323 ** ** * **** * ** ** * ** * * ** * * ** * consensus_3947#0 TCGC-TCAAACATTACACTGTC--ACCAAGNTCACCCAAGGGCAAGGGACAGANGGGGCC 595 consensus_3947#1 ACTTATCGCGCTTGCCGCTACCGAACTCTGATTACNC--GCACAGACACCAAGTCGGTAC 381 * ** * * * ** * ** * * ** * * ** ** ** * consensus_3947#0 TGAGTT--CCCATAANCGCACGGCCAACCAAGACGGANGNCAANACTGGNTGGGCGNGNC 653 consensus_3947#1 TCGATCAATCAATACGAATACTACAGGCCATGGTCGACATTAGTGCGGAAAGGGGTTGGC 441 * * * *** ** * *** * ** * * * *** * * consensus_3947#0 TCAGACAACGGGCCTGAGGTNCTAAACCCGGCAGGACCACCGAACAAAGTAACNTCCAAA 713 consensus_3947#1 TT--GCAACTACCCTGCGGATACAGCAGCTGATGCAGTGCATCATCCAGGNNCG-CTGNG 498 * **** **** ** * * * * * * * ** * * consensus_3947#0 NCANAAGGNGTGCNATATACAATNGCNACCCNNNCGANGCAAATAAACAGAACGGTAGNN 773 consensus_3947#1 CTAGACGATCCGGTAGTCATGACG--CTCCCGNNCGTGGGAAGCCTATNATGCGGCT-AT 555 * * * * * * * *** **** * ** * *** consensus_3947#0 CACTAAANAAACCACAGTGNANAC-CNATGACAAACACGAACAGGGATAAAAANAAAGAG 832 consensus_3947#1 CTTCAGCCAGATAAAAACAGACTTACCATTCCTGACGCTTCCGGCGTTGAAAGAAAAATG 615 * * * * * * * * ** * ** * * * * * *** *** * consensus_3947#0 -GATCGNAACTAAACAANNAAAAACGACANACAGAGANAAANNGGTNGGCCACCAACAGC 891 consensus_3947#1 CAACCGGAAGTACGAGAATTTGGCCGCGACGTTAAGGCAGGAGTTTGAGGAGCCGGAAAT 675 * ** ** ** * ** * ** * * * ** * consensus_3947#0 CAGGCNANGGACAAACAGAATGGCAANTAGAGAAAAGCACAATNNAAACAGAAANACGGN 951 consensus_3947#1 TGAGCA---GATTTACAAGGTGATATGT---GAGCTGCCGTCGCTGAACGTGCAGATTTC 729 ** ** *** ** * * ** ** *** * * consensus_3947#0 ACAGGGGGAACNCNGNGG 969 consensus_3947#1 CGTGCGTGGACCGTACN- 746 * * * ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||