cluster # 3948

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Anopheles gambiae
cluster # 3948 cluster # 3948 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3948#0 length = 647 sequences # 1

consensus_3948#1 length = 640 sequences # 2

consensusID : consensus_3948#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 647
fasta sequence

                              [CCGCGGACGTGTGTGCCCGTACTTGCGTGGCCAAAACTCATCGTTTCAGTGTTGTAGCGTTTGTTCATCTTGACTGCTGCTGCTGCTGCTGCTGTACCGTGTTATACTCTGTTTTCACCCGGAGCGCAGGGAGCAAAAAGGGACCTGGTAGAAAGATGTTCGCCTCACCGTGTCTACACTAACGGGTGCGTGTTTGTGTATACAGTCAGTTTCTTCAGGAATCTTCTCGCACGGCCGGTAGTAGCATTCTCGTCCTCTACACACGGTGCAAAGTGCGTCAGCAGCAGGAGAAATATCTTGAAGCATTAAAAAAACATAACTAGTAGCAGACCCCATCCTGTGTGAAAAGTGTGTCCCATGTGTATGGTGCAATAGTGCAATTGCGAATTCCCCCTCTTACCCCTTCCTACCCCTTACCGCGGGGGGAAGGTTCATCGTATCCGTGGCCGTCGTGTGTCTTTTTTCCGTGATTCGGTTGAACGCGTAGTAGTAGTAGTCGTGGTGGTTAAATGGTCTTCGTTCGGTCCTCTCGATCAAAGCAATCCGTGCGCGTGTATGTGTCGCTGTGTGGGTTAGGTGTATTGTTGTGTACAGTGCGTTTTGGGGGGGGTGAAGTGTGCATCTGAAGCTCAGAAGTGGCTCAAAAA]

[+] EMBL BM599585             [CCGCGGACGTGTGTGCCCGTACTTGCGTGGCCAAAACTCATCGTTTCAGTGTTGTAGCGTTTGTTCATCTTGACTGCTGCTGCTGCTGCTGCTGTACCGTGTTATACTCTGTTTTCACCCGGAGCGCAGGGAGCAAAAAGGGACCTGGTAGAAAGATGTTCGCCTCACCGTGTCTACACTAACGGGTGCGTGTTTGTGTATACAGTCAGTTTCTTCAGGAATCTTCTCGCACGGCCGGTAGTAGCATTCTCGTCCTCTACACACGGTGCAAAGTGCGTCAGCAGCAGGAGAAATATCTTGAAGCATTAAAAAAACATAACTAGTAGCAGACCCCATCCTGTGTGAAAAGTGTGTCCCATGTGTATGGTGCAATAGTGCAATTGCGAATTCCCCCTCTTACCCCTTCCTACCCCTTACCGCGGGGGGAAGGTTCATCGTATCCGTGGCCGTCGTGTGTCTTTTTTCCGTGATTCGGTTGAACGCGTAGTAGTAGTAGTCGTGGTGGTTAAATGGTCTTCGTTCGGTCCTCTCGATCAAAGCAATCCGTGCGCGTGTATGTGTCGCTGTGTGGGTTAGGTGTATTGTTGTGTACAGTGCGTTTTGGGGGGGGTGAAGTGTGCATCTGAAGCTCAGAAGTGGCTCAAAAA]




>consensus_3948#0
CCGCGGACGTGTGTGCCCGTACTTGCGTGGCCAAAACTCATCGTTTCAGTGTTGTAGCGT
TTGTTCATCTTGACTGCTGCTGCTGCTGCTGCTGTACCGTGTTATACTCTGTTTTCACCC
GGAGCGCAGGGAGCAAAAAGGGACCTGGTAGAAAGATGTTCGCCTCACCGTGTCTACACT
AACGGGTGCGTGTTTGTGTATACAGTCAGTTTCTTCAGGAATCTTCTCGCACGGCCGGTA
GTAGCATTCTCGTCCTCTACACACGGTGCAAAGTGCGTCAGCAGCAGGAGAAATATCTTG
AAGCATTAAAAAAACATAACTAGTAGCAGACCCCATCCTGTGTGAAAAGTGTGTCCCATG
TGTATGGTGCAATAGTGCAATTGCGAATTCCCCCTCTTACCCCTTCCTACCCCTTACCGC
GGGGGGAAGGTTCATCGTATCCGTGGCCGTCGTGTGTCTTTTTTCCGTGATTCGGTTGAA
CGCGTAGTAGTAGTAGTCGTGGTGGTTAAATGGTCTTCGTTCGGTCCTCTCGATCAAAGC
AATCCGTGCGCGTGTATGTGTCGCTGTGTGGGTTAGGTGTATTGTTGTGTACAGTGCGTT
TTGGGGGGGGTGAAGTGTGCATCTGAAGCTCAGAAGTGGCTCAAAAA

consensusID : consensus_3948#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 640
fasta sequence

                              [CCGCTTACGCGAACGGAACGGACGTGTGTGCCCGTACTTGCGTGGCCAAAACTCATCGTTTCAGTGTTGTAGCGTTTGTTCATCTTGACTGCTGCTGCTGCTGCTGCTGTACCGTGTTATACTCTGTTTTCACCCGGAGCGCAGGGAGCAAAAAGGGACCTGGTAGAAAGATGTTCGCCTCACCGTGTCTACACTAACGGCATTAAAAAAACATAACTAGTAGCAGACCCCATCCTGTGTGAAAAGTGTGTCCCATGTGTATGGTGCAATAGTGCAATTGCGAATTCCCCCTCTTACCCCTTCCTACCCCTTACCGCGGGGGGAAGGTTCATCGTATCCGTGGCCGTCGTGTGTCTTTTTTCCGTGATTCGGTTGAACGCGTAGTAGTAGTAGTCGTGGTGGTTAAATGGTCTTCGTTCGGTCCTCTCGATCAAAGCAATCCGTGCGCGTGTATGTGTCGCTGTGTGGGTTAGTGTATTGTTGTGTACAGTGCGTTTTGGGGTGGTGAAGTGTGCATCTGAAGCTCAGAAGTGGCTCAAAAAAAGTTTGAAAAAGCTGTGAATTAAAAGGGTGAAAATTTTGGTGTTGTTTTGTCCCCACCGAAGCGTGAAAATAGTAAGCGTGTGAAAAACATCCCCGG]

[+] EMBL BM641880             [CCGCTTACGCGAACGGAACGGACGTGTGTGCCCGTACTTGCGTGGCCAAAACTCATCGTTTCAGTGTTGTAGCGTTTGTTCATCTTGACTGCTGCTGCTGCTGCTGCTGTACCGTGTTATACTCTGTTTTCACCCGGAGCGCAGGGAGCAAAAAGGGACCTGGTAGAAAGATGTTCGCCTCACCGTGTCTACACTAACGGCATTAAAAAAACATAACTAGTAGCAGACCCCATCCTGTGTGAAAAGTGTGTCCCATGTGTATGGTGCAATAGTGCAATTGCGAATTCCCCCTCTTACCCCTTCCTACCCCTTACCGCGGGGGGAAGGTTCATCGTATCCGTGGCCGTCGTGTGTCTTTTTTCCGTGATTCGGTTGAACGCGTAGTAGTAGTAGTCGTGGTGGTTAAATGGTCTTCGTTCGGTCCTCTCGATCAAAGCAATCCGTGCGCGTGTATGTGTCGCTGTGTGGGTTAGTGTATTGTTGTGTACAGTGCGTTTTGGGGTGGTGAAGTGTGCATCTGAAGCTCAGAAGTGGCTCAAAAAAAGTTTGAAAAAGCTGTGAATTAAAAGGGTGAAAATTTTGGTGTTGTTTTGTCCCCACCGAAGCGTGAAAATAGTAAGCGTGTGAAAAACATCCCCGG]
[+] EMBL BM641473             [            cCGGAACGGACGTGTGTGCCCGTACTTGCGTGGCCAAAACTCATCGTTTCAGTGTTGTAGCGTTTGTTCATCTTGACTGCTGCTGCTGCTGCTGCTGTACCGTGTTATACTCTGTTTTCACCCGGAGCGCAGGGAGCAAAAAGGGACCTGGTAGAAAGATGTTCGCCTCACCGTGTCTACACTAACGGCATTAAAAAAACATAACTAGTAGCAGACCCCATCCTGTGTGAAAAGTGTGTCCCATGTGTATGGTGCAATAGTGCAATTGCGAATTCCCCCTCTTACCCCTTCCTACCCCTTACCGCGGGGGGAAGGTTCATCGTATCCGTGGCCGTCGTGTGTCTTTTTTCCGTGATTCGGTTGAACGCGTAGTAGTAGTAGTCGTGGTGGTTAAATGGTCTTCGTTCGGTCCTCTCGATCAAAGCAATCCGTGCGCGTGTATGTGTCGCTGTGTGGGTTAGTGTATTGTTGTGTACAGTGCGTTTTGGGGTGGTGAAGTGTGCATCTGAAGCTCAGAAGTGGCTCAAAAAAAGTTTGAAAAAGCTGTGAATTAAAAGGGTGAAAA TTTGGTGTTGTTTTGTCCCC                                          ]




>consensus_3948#1
CCGCTTACGCGAACGGAACGGACGTGTGTGCCCGTACTTGCGTGGCCAAAACTCATCGTT
TCAGTGTTGTAGCGTTTGTTCATCTTGACTGCTGCTGCTGCTGCTGCTGTACCGTGTTAT
ACTCTGTTTTCACCCGGAGCGCAGGGAGCAAAAAGGGACCTGGTAGAAAGATGTTCGCCT
CACCGTGTCTACACTAACGGCATTAAAAAAACATAACTAGTAGCAGACCCCATCCTGTGT
GAAAAGTGTGTCCCATGTGTATGGTGCAATAGTGCAATTGCGAATTCCCCCTCTTACCCC
TTCCTACCCCTTACCGCGGGGGGAAGGTTCATCGTATCCGTGGCCGTCGTGTGTCTTTTT
TCCGTGATTCGGTTGAACGCGTAGTAGTAGTAGTCGTGGTGGTTAAATGGTCTTCGTTCG
GTCCTCTCGATCAAAGCAATCCGTGCGCGTGTATGTGTCGCTGTGTGGGTTAGTGTATTG
TTGTGTACAGTGCGTTTTGGGGTGGTGAAGTGTGCATCTGAAGCTCAGAAGTGGCTCAAA
AAAAGTTTGAAAAAGCTGTGAATTAAAAGGGTGAAAATTTTGGTGTTGTTTTGTCCCCAC
CGAAGCGTGAAAATAGTAAGCGTGTGAAAAACATCCCCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3948#0      ---------------CCGCGGACGTGTGTGCCCGTACTTGCGTGGCCAAAACTCATCGTT 45
consensus_3948#1      CCGCTTACGCGAACGGAACGGACGTGTGTGCCCGTACTTGCGTGGCCAAAACTCATCGTT 60
                                        ******************************************

consensus_3948#0      TCAGTGTTGTAGCGTTTGTTCATCTTGACTGCTGCTGCTGCTGCTGCTGTACCGTGTTAT 105
consensus_3948#1      TCAGTGTTGTAGCGTTTGTTCATCTTGACTGCTGCTGCTGCTGCTGCTGTACCGTGTTAT 120
                      ************************************************************

consensus_3948#0      ACTCTGTTTTCACCCGGAGCGCAGGGAGCAAAAAGGGACCTGGTAGAAAGATGTTCGCCT 165
consensus_3948#1      ACTCTGTTTTCACCCGGAGCGCAGGGAGCAAAAAGGGACCTGGTAGAAAGATGTTCGCCT 180
                      ************************************************************

consensus_3948#0      CACCGTGTCTACACTAACGGGTGCGTGTTTGTGTATACAGTCAGTTTCTTCAGGAATCTT 225
consensus_3948#1      CACCGTGTCTACACTAACGG---------------------------------------- 200
                      ********************                                        

consensus_3948#0      CTCGCACGGCCGGTAGTAGCATTCTCGTCCTCTACACACGGTGCAAAGTGCGTCAGCAGC 285
consensus_3948#1      ------------------------------------------------------------
                                                                                  

consensus_3948#0      AGGAGAAATATCTTGAAGCATTAAAAAAACATAACTAGTAGCAGACCCCATCCTGTGTGA 345
consensus_3948#1      ------------------CATTAAAAAAACATAACTAGTAGCAGACCCCATCCTGTGTGA 242
                                        ******************************************

consensus_3948#0      AAAGTGTGTCCCATGTGTATGGTGCAATAGTGCAATTGCGAATTCCCCCTCTTACCCCTT 405
consensus_3948#1      AAAGTGTGTCCCATGTGTATGGTGCAATAGTGCAATTGCGAATTCCCCCTCTTACCCCTT 302
                      ************************************************************

consensus_3948#0      CCTACCCCTTACCGCGGGGGGAAGGTTCATCGTATCCGTGGCCGTCGTGTGTCTTTTTTC 465
consensus_3948#1      CCTACCCCTTACCGCGGGGGGAAGGTTCATCGTATCCGTGGCCGTCGTGTGTCTTTTTTC 362
                      ************************************************************

consensus_3948#0      CGTGATTCGGTTGAACGCGTAGTAGTAGTAGTCGTGGTGGTTAAATGGTCTTCGTTCGGT 525
consensus_3948#1      CGTGATTCGGTTGAACGCGTAGTAGTAGTAGTCGTGGTGGTTAAATGGTCTTCGTTCGGT 422
                      ************************************************************

consensus_3948#0      CCTCTCGATCAAAGCAATCCGTGCGCGTGTATGTGTCGCTGTGTGGGTTAGGTGTATTGT 585
consensus_3948#1      CCTCTCGATCAAAGCAATCCGTGCGCGTGTATGTGTCGCTGTGTGGGTTAG-TGTATTGT 481
                      *************************************************** ********

consensus_3948#0      TGTGTACAGTGCGTTTTGGGGGGGGTGAAGTGTGCATCTGAAGCTCAGAAGTGGCTCAAA 645
consensus_3948#1      TGTGTACAGTGCGTTTTGGGGTGG-TGAAGTGTGCATCTGAAGCTCAGAAGTGGCTCAAA 540
                      ********************* ** ***********************************

consensus_3948#0      AA---------------------------------------------------------- 647
consensus_3948#1      AAAAGTTTGAAAAAGCTGTGAATTAAAAGGGTGAAAATTTTGGTGTTGTTTTGTCCCCAC 600
                      **                                                          

consensus_3948#0      ----------------------------------------
consensus_3948#1      CGAAGCGTGAAAATAGTAAGCGTGTGAAAAACATCCCCGG 640