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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3950#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1344 fasta sequence
[TGTTGTGGTGTAGCTTAAGACGATTTTGGTATCGTATAGTTGAGTGGAAGCAGATTTGAAATCGTTTTGTCGTACATTTGTCAGAGAACCGGCTCAAAAATGAACTCATACTTTGAACAGACCGGATTCTATGGACATCCTCACCAAGCCGCGGCCGGAATGATGACAACGACAGGAACCCATCATGACCAAACAACGGCTGCAGCAGCCGCGGCTTATAGAGGGTTTCCACTTTCTCTCGGAATGTCCCCGTATACGAACCATCACCTGCACCAAACACGCACAGCCCAAGAGTCACCATATGATGCGAGCATACAGGCCGCGTGTAAACAAATTTACGAGGGCTCCTACAGTTCCAAAGATTGTGGAACGAAAGGCACCAGTGGAAACAACGGCACGGACACAAGTAACGGCTACAAAGATGTGTGGAATGCAAACAGTGGCGCAACTAATGGGGCGACCACTGGTGCCACTGGTAGTAACGTACCTGCCCAACAAAACAGTTCTGTTCCGGTCAGACCTTCCGCATGCACGCCAGATTCGCGCGTTGGGGGCTATATTGACGCATCTGGAGGGAGCCCAGTGAGTCGGGCTGGTTCGGCTGCTGCCGCAGCTGGCGTACCCGGGTCATGGAATACCAATCAATGTTCACTAACTGGGTCAACTGGTGGACAAGCTGCTCCTTCCACTGGACTGCATCAGTCCAATCACACTTTTTATCCCTGGATGGCTATTGCAGGTAAGAGATACTCAGAATCTCTTGCGGGCACTCTTCTACCAGACTGGATAGGTGCAAATGGATTACGAAGAAGAGGACGCCAAACTTACACAAGATACCAAACGCTGGAATTGGAGAAAGAGTTCCACACTAACCACTACCTGACCCGTCGACGCCGGATTGAAATGGCACATGCTCTATGTCTAACAGAGCGACAGATCAAAATTTGGTTTCAAAACCGCCGAATGAAGCTAAAGAAGGAAATTCAAGCCATCAAGGAGCTAAACGAGCAAGAAAAACAGGCTCAGGCTCAAAAAGCAGCCGCTGCAGCAGCTGCAGCGGCTGCGTTACACGAGCAAAACTAGGGGTTACACCAACAACACACCAATCACAGTAGTGCAAGTAATTATTTATACTAAAGAATAAATTCCGGTCAAATCAGGAAACAGATCAATATGACATAACAGATTGATTGTTTGTTCTTTATTTCATCATATAATACAGGTAGGCATAATATATCCATTTTGTTTGGTTGTGTAGCCTCAGAGGCACTACAATATTTTTTAAACTGTTGTATAAGTTTTTTGCAATCTTAAAGACTGTTTATCTGTTCCCAGTGTTTATCT]
[+] EMBL AF080562 [TGTTGTGGTGTAGCTTAAGACGATTTTGGTATCGTATAGTTGAGTGGAAGCAGATTTGAAATCGTTTTGTCGTACATTTGTCAGAGAACCGGCTCAAAAATGAACTCATACTTTGAACAGACCGGATTCTATGGACATCCTCACCAAGCCGCGGCCGGAATGATGACAACGACAGGAACCCATCATGACCAAACAACGGCTGCAGCAGCCGCGGCTTATAGAGGGTTTCCACTTTCTCTCGGAATGTCCCCGTATACGAACCATCACCTGCACCAAACACGCACAGCCCAAGAGTCACCATATGATGCGAGCATACAGGCCGCGTGTAAACAAATTTACGAGGGCTCCTACAGTTCCAAAGATTGTGGAACGAAAGGCACCAGTGGAAACAACGGCACGGACACAAGTAACGGCTACAAAGATGTGTGGAATGCAAACAGTGGCGCAACTAATGGGGCGACCACTGGTGCCACTGGTAGTAACGTACCTGCCCAACAAAACAGTTCTGTTCCGGTCAGACCTTCCGCATGCACGCCAGATTCGCGCGTTGGGGGCTATATTGACGCATCTGGAGGGAGCCCAGTGAGTCGGGCTGGTTCGGCTGCTGCCGCAGCTGGCGTACCCGGGTCATGGAATACCAATCAATGTTCACTAACTGGGTCAACTGGTGGACAAGCTGCTCCTTCCACTGGACTGCATCAGTCCAATCACACTTTTTATCCCTGGATGGCTATTGCAGGTAAGAGATACTCAGAATCTCTTGCGGGCACTCTTCTACCAGACTGGATAGGTGCAAATGGATTACGAAGAAGAGGACGCCAAACTTACACAAGATACCAAACGCTGGAATTGGAGAAAGAGTTCCACACTAACCACTACCTGACCCGTCGACGCCGGATTGAAATGGCACATGCTCTATGTCTAACAGAGCGACAGATCAAAATTTGGTTTCAAAACCGCCGAATGAAGCTAAAGAAGGAAATTCAAGCCATCAAGGAGCTAAACGAGCAAGAAAAACAGGCTCAGGCTCAAAAAGCAGCCGCTGCAGCAGCTGCAGCGGCTGCGTTACACGAGCAAAACTAGGGGTTACACCAACAACACACCAATCACAGTAGTGCAAGTAATTATTTATACTAAAGAATAAATTCCGGTCAAATCAGGAAACAGATCAATATGACATAACAGATTGATTGTTTGTTCTTTATTTCATCATATAATACAGGTAGGCATAATATATCCATTTTGTTTGGTTGTGTAGCCTCAGAGGCACTACAATATTTTTTAAACTGTTGTATAAGTTTTTTGCAATCTTAAAGACTGTTTATCTGTTCCCAGTGTTTATCT]
consensusID : consensus_3950#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1084 fasta sequence
[TTGTCGTACATTTGTCAGAGAACCGGCTCAAAAATGAACTCATACTTTGAACAGACCGGATTCTATGGACATCCTCACCAAGCCGCGGCCGGAATGATGACAACGACAGGAACCCATCATGACCAAACAACGGCTGCAGCAGCCGCGGCTTATAGAGGGTTTCCACTTTCTCTCGGAATGTCCCCGTATACGAACCATCACCTGCACCAAACACGCACAGCCCAAGAGTCACCATATGATGCGAGCATACAGGCCGCGTGTAAACAAATTTACGAGGGCTCCTACAGTTCCAAAGATTGTGGAACGAAAGGCACCAGTGGAAACAACGGCACGGACACAAGTAACGGCTACAAAGATGTGTGGAATGCAAACAGTGGCGCAACTAATGGGGCGACCACTGGTGGCACTGGTAGTAACGTACCTGCCCAACAAAACAGTTCTGTTCCGGTCAGACCTTCCGCATGCACGCCAGATTCGCGCGTTGGGGGCTATATTGACGCATCTGGAGGGAGCCCAGTGAGTCGGGCTGGTTCGGCTGCTGCCGCAACTGGCGTACCCGGGTCATGGAATACCAATCAATGTTCACTAACTGGGTCAACTGGTGGACAAGCTGCTCCTTCCACTGGACTGCATCAGTCCAATCACACTTTTTATCCCTGGATGGCTATTGCAGGTGCAAATGGATTACGAAGAAGAGGACGCCAAACTTACACAAGATACCAAACGCTGGAATTGGAGAAAGAGTTCCACACTAACCACTACCTGACCCGTCGACGCCGGATTGAAATGGCACATGCTCTATGTCTAACAGAGCGACAGATCAAAATTTGGTTTCAAAACCGCCGAATGAAGCTAAAGAAAGAAATTCAAGCCATCAAGGAGCTAAACGAGCAAGAAAAACAGGCTCAGGCTCAAAAAGCAGCCGCTGCAGCAGCTGCAGCGGCTGCGTTACACGAGCAAAACTAGGGGTTACACCAACAACACACCAATCACAGTAGTGCAAGTAATTATTTATACTAAAGAATAAATTCCGGTCAAATCAGGAAACAGATCAATATGACATAACAGATTGATTGTTTGTTCT]
[+] EMBL AF080563 [TTGTCGTACATTTGTCAGAGAACCGGCTCAAAAATGAACTCATACTTTGAACAGACCGGATTCTATGGACATCCTCACCAAGCCGCGGCCGGAATGATGACAACGACAGGAACCCATCATGACCAAACAACGGCTGCAGCAGCCGCGGCTTATAGAGGGTTTCCACTTTCTCTCGGAATGTCCCCGTATACGAACCATCACCTGCACCAAACACGCACAGCCCAAGAGTCACCATATGATGCGAGCATACAGGCCGCGTGTAAACAAATTTACGAGGGCTCCTACAGTTCCAAAGATTGTGGAACGAAAGGCACCAGTGGAAACAACGGCACGGACACAAGTAACGGCTACAAAGATGTGTGGAATGCAAACAGTGGCGCAACTAATGGGGCGACCACTGGTGGCACTGGTAGTAACGTACCTGCCCAACAAAACAGTTCTGTTCCGGTCAGACCTTCCGCATGCACGCCAGATTCGCGCGTTGGGGGCTATATTGACGCATCTGGAGGGAGCCCAGTGAGTCGGGCTGGTTCGGCTGCTGCCGCAACTGGCGTACCCGGGTCATGGAATACCAATCAATGTTCACTAACTGGGTCAACTGGTGGACAAGCTGCTCCTTCCACTGGACTGCATCAGTCCAATCACACTTTTTATCCCTGGATGGCTATTGCAGGTGCAAATGGATTACGAAGAAGAGGACGCCAAACTTACACAAGATACCAAACGCTGGAATTGGAGAAAGAGTTCCACACTAACCACTACCTGACCCGTCGACGCCGGATTGAAATGGCACATGCTCTATGTCTAACAGAGCGACAGATCAAAATTTGGTTTCAAAACCGCCGAATGAAGCTAAAGAAAGAAATTCAAGCCATCAAGGAGCTAAACGAGCAAGAAAAACAGGCTCAGGCTCAAAAAGCAGCCGCTGCAGCAGCTGCAGCGGCTGCGTTACACGAGCAAAACTAGGGGTTACACCAACAACACACCAATCACAGTAGTGCAAGTAATTATTTATACTAAAGAATAAATTCCGGTCAAATCAGGAAACAGATCAATATGACATAACAGATTGATTGTTTGTTCT]
consensusID : consensus_3950#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 690 fasta sequence
[CCGGAAGGCTCGTGGCATTGTCATACTCTCACGGTTTTACGAGTTTTACGACACTTTTATGCGAGATAGAATGGGACATAAAATCACGGGAAGTTTTCATTTGATAGTCGTATCGTGCAGCTTCCTTTTCTGACTGGCCTACCACAGAATCGTCCTCCGAAGACAAAGAGAATCCATAAGCAGTAGTAAACAAGGTGCAAATGGATTACGAAGAAGAGGACGCCAAACTTACACAAGATACCAAACGCTGGAATTGGAGAAAGAGTTCCACACTAACCACTACCTGACCCGTCGACGCCGGATTGAAATGGCACATGCTCTATGTCTAACAGAGCGACAGATCAAAATTTGGTTTCAAAACCGCCGAATGAAGCTAAAGAAGGAAATTCAAGCCATCAAGGAGCTAAACGAGCAAGAAAAACAGGCTCAGGCTCAAAAAGCAGCCGCTGCAGCAGCTGCAGCGGCTGCGTTACACGAGCAAAACTAGGGGTTACACCAACAACACACCAATCACAGTAGTGCAAGTAATTATTTATACTAAAGAATAAATTCCGGTCAAATCAGGAAACAGATCAATATGACATAACAGATTGATTGTTTGTTCTTTATTTCATCATATAATACAGGTAGGCATAATATATCCATTTTGTTTGGTTGTGTAGCCTCAGAGGCACTACAATATTTTTTAAA]
[+] EMBL BM582893 [CCGGAAGGCTCGTGGCATTGTCATACTCTCACGGTTTTACGAGTTTTACGACACTTTTATGCGAGATAGAATGGGACATAAAATCACGGGAAGTTTTCATTTGATAGTCGTATCGTGCAGCTTCCTTTTCTGACTGGCCTACCACAGAATCGTCCTCCGAAGACAAAGAGAATCCATAAGCAGTAGTAAACAAGGTGCAAATGGATTACGAAGAAGAGGACGCCAAACTTACACAAGATACCAAACGCTGGAATTGGAGAAAGAGTTCCACACTAACCACTACCTGACCCGTCGACGCCGGATTGAAATGGCACATGCTCTATGTCTAACAGAGCGACAGATCAAAATTTGGTTTCAAAACCGCCGAATGAAGCTAAAGAAGGAAATTCAAGCCATCAAGGAGCTAAACGAGCAAGAAAAACAGGCTCAGGCTCAAAAAGCAGCCGCTGCAGCAGCTGCAGCGGCTGCGTTACACGAGCAAAACTAGGGGTTACACCAACAACACACCAATCACAGTAGTGCAAGTAATTATTTATACTAAAGAATAAATTCCGGTCAAATCAGGAAACAGATCAATATGACATAACAGATTGATTGTTTGTTCTTTATTTCATCATATAATACAGGTAGGCATAATATATCCATTTTGTTTGGTTGTGTAGCCTCAGAGGCACTACAATATTTTTTAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3950#0 TGTTGTGGTGTAGCTTAAGACGATTTTGGTATCGTATAGTTGAGTGGAAGCAGATTTGAA 60
consensus_3950#1 ------------------------------------------------------------
consensus_3950#2 ------------------------------------------------------------
consensus_3950#0 ATCGTTTTGTCGTACATTTGTCAGAGAACCGGCTCAAAAATGAACTCATACTTTGAACAG 120
consensus_3950#1 ------TTGTCGTACATTTGTCAGAGAACCGGCTCAAAAATGAACTCATACTTTGAACAG 54
consensus_3950#2 ------------------------------------------------------------
consensus_3950#0 ACCGGATTCTATGGACATCCTCACCAAGCCGCGGCCGGAATGATGACAACGACAGGAACC 180
consensus_3950#1 ACCGGATTCTATGGACATCCTCACCAAGCCGCGGCCGGAATGATGACAACGACAGGAACC 114
consensus_3950#2 ------------------------------------------------------------
consensus_3950#0 CATCATGACCAAACAACGGCTGCAGCAGCCGCGGCTTATAGAGGGTTTCCACTTTCTCTC 240
consensus_3950#1 CATCATGACCAAACAACGGCTGCAGCAGCCGCGGCTTATAGAGGGTTTCCACTTTCTCTC 174
consensus_3950#2 ------------------------------------------------------------
consensus_3950#0 GGAATGTCCCCGTATACGAACCATCACCTGCACCAAACACGCACAGCCCAAGAGTCACCA 300
consensus_3950#1 GGAATGTCCCCGTATACGAACCATCACCTGCACCAAACACGCACAGCCCAAGAGTCACCA 234
consensus_3950#2 ------------------------------------------------------------
consensus_3950#0 TATGATGCGAGCATACAGGCCGCGTGTAAACAAATTTACGAGGGCTCCTACAGTTCCAAA 360
consensus_3950#1 TATGATGCGAGCATACAGGCCGCGTGTAAACAAATTTACGAGGGCTCCTACAGTTCCAAA 294
consensus_3950#2 ------------------------------------------------------------
consensus_3950#0 GATTGTGGAACGAAAGGCACCAGTGGAAACAACGGCACGGACACAAGTAACGGCTACAAA 420
consensus_3950#1 GATTGTGGAACGAAAGGCACCAGTGGAAACAACGGCACGGACACAAGTAACGGCTACAAA 354
consensus_3950#2 ------------------------------------------------------------
consensus_3950#0 GATGTGTGGAATGCAAACAGTGGCGCAACTAATGGGGCGACCACTGGTGCCACTGGTAGT 480
consensus_3950#1 GATGTGTGGAATGCAAACAGTGGCGCAACTAATGGGGCGACCACTGGTGGCACTGGTAGT 414
consensus_3950#2 ------------------------------------------------------------
consensus_3950#0 AACGTACCTGCCCAACAAAACAGTTCTGTTCCGGTCAGACCTTCCGCATGCACGCCAGAT 540
consensus_3950#1 AACGTACCTGCCCAACAAAACAGTTCTGTTCCGGTCAGACCTTCCGCATGCACGCCAGAT 474
consensus_3950#2 -----------------------------------------------------------C 1
consensus_3950#0 TCGCGCGTTGGGGGCTATATTGACGCATCTGGAGGGAGCCCAGTGAGTCGGGCTGGTTCG 600
consensus_3950#1 TCGCGCGTTGGGGGCTATATTGACGCATCTGGAGGGAGCCCAGTGAGTCGGGCTGGTTCG 534
consensus_3950#2 CGGAAGGCTCGTGGC---ATTGTCATACTCTCACG--GTTTTACGAGTT----TTACGAC 52
* * * * *** **** * * * * * **** *
consensus_3950#0 GCTGCTGCCGCAGCTGGCGTACCCGGGTCATGGAATACCAATCAATGTTCACTAACTGGG 660
consensus_3950#1 GCTGCTGCCGCAACTGGCGTACCCGGGTCATGGAATACCAATCAATGTTCACTAACTGGG 594
consensus_3950#2 ACTTTTATGCGAGATAGAAT----GGGACATAAAATCACGGGAAGTTTTCATTTGATAG- 107
** * * * * * *** *** *** * * * **** * * *
consensus_3950#0 TCAACTGGTGGACAAGCTGCTCCTTCCACTGGACTGCATCAGTCCAATCACACTTTTTAT 720
consensus_3950#1 TCAACTGGTGGACAAGCTGCTCCTTCCACTGGACTGCATCAGTCCAATCACACTTTTTAT 654
consensus_3950#2 TCGTATCGTG--CAGCTTCCTTTTCTGACTGGCCTACCACAG---AATCGTCCTCCGAAG 162
** * *** ** * ** * ***** ** * *** **** ** *
consensus_3950#0 CCCTGGATGG-CTATTGCAGGTAAGAGATACTCAGAATCTCTTGCGGGCACTCTTCTACC 779
consensus_3950#1 CCCTGGATGG-CTATTGCAGGT-------------------------------------- 675
consensus_3950#2 ACAAAGAGAATCCATAAGCAGTAGTAAACA------------------------------ 192
* ** * ** **
consensus_3950#0 AGACTGGATAGGTGCAAATGGATTACGAAGAAGAGGACGCCAAACTTACACAAGATACCA 839
consensus_3950#1 -------------GCAAATGGATTACGAAGAAGAGGACGCCAAACTTACACAAGATACCA 722
consensus_3950#2 ---------AGGTGCAAATGGATTACGAAGAAGAGGACGCCAAACTTACACAAGATACCA 243
***********************************************
consensus_3950#0 AACGCTGGAATTGGAGAAAGAGTTCCACACTAACCACTACCTGACCCGTCGACGCCGGAT 899
consensus_3950#1 AACGCTGGAATTGGAGAAAGAGTTCCACACTAACCACTACCTGACCCGTCGACGCCGGAT 782
consensus_3950#2 AACGCTGGAATTGGAGAAAGAGTTCCACACTAACCACTACCTGACCCGTCGACGCCGGAT 303
************************************************************
consensus_3950#0 TGAAATGGCACATGCTCTATGTCTAACAGAGCGACAGATCAAAATTTGGTTTCAAAACCG 959
consensus_3950#1 TGAAATGGCACATGCTCTATGTCTAACAGAGCGACAGATCAAAATTTGGTTTCAAAACCG 842
consensus_3950#2 TGAAATGGCACATGCTCTATGTCTAACAGAGCGACAGATCAAAATTTGGTTTCAAAACCG 363
************************************************************
consensus_3950#0 CCGAATGAAGCTAAAGAAGGAAATTCAAGCCATCAAGGAGCTAAACGAGCAAGAAAAACA 1019
consensus_3950#1 CCGAATGAAGCTAAAGAAAGAAATTCAAGCCATCAAGGAGCTAAACGAGCAAGAAAAACA 902
consensus_3950#2 CCGAATGAAGCTAAAGAAGGAAATTCAAGCCATCAAGGAGCTAAACGAGCAAGAAAAACA 423
****************** *****************************************
consensus_3950#0 GGCTCAGGCTCAAAAAGCAGCCGCTGCAGCAGCTGCAGCGGCTGCGTTACACGAGCAAAA 1079
consensus_3950#1 GGCTCAGGCTCAAAAAGCAGCCGCTGCAGCAGCTGCAGCGGCTGCGTTACACGAGCAAAA 962
consensus_3950#2 GGCTCAGGCTCAAAAAGCAGCCGCTGCAGCAGCTGCAGCGGCTGCGTTACACGAGCAAAA 483
************************************************************
consensus_3950#0 CTAGGGGTTACACCAACAACACACCAATCACAGTAGTGCAAGTAATTATTTATACTAAAG 1139
consensus_3950#1 CTAGGGGTTACACCAACAACACACCAATCACAGTAGTGCAAGTAATTATTTATACTAAAG 1022
consensus_3950#2 CTAGGGGTTACACCAACAACACACCAATCACAGTAGTGCAAGTAATTATTTATACTAAAG 543
************************************************************
consensus_3950#0 AATAAATTCCGGTCAAATCAGGAAACAGATCAATATGACATAACAGATTGATTGTTTGTT 1199
consensus_3950#1 AATAAATTCCGGTCAAATCAGGAAACAGATCAATATGACATAACAGATTGATTGTTTGTT 1082
consensus_3950#2 AATAAATTCCGGTCAAATCAGGAAACAGATCAATATGACATAACAGATTGATTGTTTGTT 603
************************************************************
consensus_3950#0 CTTTATTTCATCATATAATACAGGTAGGCATAATATATCCATTTTGTTTGGTTGTGTAGC 1259
consensus_3950#1 CT---------------------------------------------------------- 1084
consensus_3950#2 CTTTATTTCATCATATAATACAGGTAGGCATAATATATCCATTTTGTTTGGTTGTGTAGC 663
**
consensus_3950#0 CTCAGAGGCACTACAATATTTTTTAAACTGTTGTATAAGTTTTTTGCAATCTTAAAGACT 1319
consensus_3950#1 ------------------------------------------------------------
consensus_3950#2 CTCAGAGGCACTACAATATTTTTTAAA--------------------------------- 690
consensus_3950#0 GTTTATCTGTTCCCAGTGTTTATCT 1344
consensus_3950#1 -------------------------
consensus_3950#2 -------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||