cluster # 3959

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Anopheles gambiae
cluster # 3959 cluster # 3959 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3959#0 length = 708 sequences # 1

consensus_3959#1 length = 650 sequences # 1
consensus_3959#2 length = 523 sequences # 1

consensusID : consensus_3959#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 708
fasta sequence

                              [GACTGGAACCATGTGTACCAGGTCGCCCTGCAGCGAGGCTACGTCCGGCCGGACGAGCCCCTGCTGACTGGACCGTTGCCGGTCCCGCTCGTCAACCAGCTCGAGAACGTTCCGTTTGATCAGCCCGTTGCGATCAACCAGTTCGTCCAGCTGGTCCCAAATGCGCCCGAGGTGTTCCCGCCGCTGCAGCGCAGCGTGGATGACGCGCTCGTCCGTGCCAGAAATACTCCCTTAACCCCGCAGGAGCAAGTGTTTTAGTCTCGCAAGGATATTTGACATTCTGCAAACCGTTACCAGGACAACGAGATGGACCAATTCAACTGATTTAAGCAGCATTACCCACACAACTCTCACCCGTTCACCATCGTGCAATGGTGTGCGCTGTGTTGGTGTGTGTCTAACGTGTGGATATTACTATTCTTAAGAGCATTAGAACTTTAAATTGCTGGCTTCTTCTACCGGACTATTTCCGGTACAAAACAGAGAGAGAGAGAGAGAAAGAGAGGAGAAAAACAAAACCAAGTGAAGCCGAACTCAAGGGCCCAATGCACCTCTCTGGAAACCATCTCGCGCAGGGCGCATTCAAGTGCAACGACATCTCGGTACGAGCGCGCCGCTGTGCTGTGCGTCTGGGCTCTGGTCGGNTGTGTTCACTGGATAGCATCAAAGATAGTGTATACTAGCAGGGAAAATAAATGTATTTTAGTT]

[+] EMBL BX623943             [GACTGGAACCATGTGTACCAGGTCGCCCTGCAGCGAGGCTACGTCCGGCCGGACGAGCCCCTGCTGACTGGACCGTTGCCGGTCCCGCTCGTCAACCAGCTCGAGAACGTTCCGTTTGATCAGCCCGTTGCGATCAACCAGTTCGTCCAGCTGGTCCCAAATGCGCCCGAGGTGTTCCCGCCGCTGCAGCGCAGCGTGGATGACGCGCTCGTCCGTGCCAGAAATACTCCCTTAACCCCGCAGGAGCAAGTGTTTTAGTCTCGCAAGGATATTTGACATTCTGCAAACCGTTACCAGGACAACGAGATGGACCAATTCAACTGATTTAAGCAGCATTACCCACACAACTCTCACCCGTTCACCATCGTGCAATGGTGTGCGCTGTGTTGGTGTGTGTCTAACGTGTGGATATTACTATTCTTAAGAGCATTAGAACTTTAAATTGCTGGCTTCTTCTACCGGACTATTTCCGGTACAAAACAGAGAGAGAGAGAGAGAAAGAGAGGAGAAAAACAAAACCAAGTGAAGCCGAACTCAAGGGCCCAATGCACCTCTCTGGAAACCATCTCGCGCAGGGCGCATTCAAGTGCAACGACATCTCGGTACGAGCGCGCCGCTGTGCTGTGCGTCTGGGCTCTGGTCGGNTGTGTTCACTGGATAGCATCAAAGATAGTGTATACTAGCAGGGAAAATAAATGTATTTTAGTT]




>consensus_3959#0
GACTGGAACCATGTGTACCAGGTCGCCCTGCAGCGAGGCTACGTCCGGCCGGACGAGCCC
CTGCTGACTGGACCGTTGCCGGTCCCGCTCGTCAACCAGCTCGAGAACGTTCCGTTTGAT
CAGCCCGTTGCGATCAACCAGTTCGTCCAGCTGGTCCCAAATGCGCCCGAGGTGTTCCCG
CCGCTGCAGCGCAGCGTGGATGACGCGCTCGTCCGTGCCAGAAATACTCCCTTAACCCCG
CAGGAGCAAGTGTTTTAGTCTCGCAAGGATATTTGACATTCTGCAAACCGTTACCAGGAC
AACGAGATGGACCAATTCAACTGATTTAAGCAGCATTACCCACACAACTCTCACCCGTTC
ACCATCGTGCAATGGTGTGCGCTGTGTTGGTGTGTGTCTAACGTGTGGATATTACTATTC
TTAAGAGCATTAGAACTTTAAATTGCTGGCTTCTTCTACCGGACTATTTCCGGTACAAAA
CAGAGAGAGAGAGAGAGAAAGAGAGGAGAAAAACAAAACCAAGTGAAGCCGAACTCAAGG
GCCCAATGCACCTCTCTGGAAACCATCTCGCGCAGGGCGCATTCAAGTGCAACGACATCT
CGGTACGAGCGCGCCGCTGTGCTGTGCGTCTGGGCTCTGGTCGGNTGTGTTCACTGGATA
GCATCAAAGATAGTGTATACTAGCAGGGAAAATAAATGTATTTTAGTT

consensusID : consensus_3959#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 650
fasta sequence

                              [CAGATCGNCCGAGGTTTACTGNGCTGGATAAGTATTCCACAGACGATGAAGGTTGCCTTTGCCTGTTGCCTGTGGTGGGCGTCGGCTGCCAGGCCACAAAACTACGTTCAAGAGGACTGGAACCATGTGTACCAGGTCGCCCTGCAGCGGGGCTACGTCGGCGGACGAGCCCCTGCTGACTGGACCGTTGCCGGTCCCGCTCGTCAACAGCTCGAGAACGTTCCGTTTGATCAGCCGTTGCGATCAAACAGTTCGTTCCCCAGTGGTCCCGAATGCTGCCCTGAGTGTGTTCCCACCTGCGTGCAGCNGCATGATGTTGGAATTGACCGCTGCTCTGTCCTGGTGCCAGAAAATTACTCCCCTTTAACCCCCCGGCAGGGAAGCCAAAAGGTGGTTATAACGTCGTTCCGCCCAAGGTGGAGTTATTTTACCAGTTTCCTTGCANAAACGCCTGTTTAACCCAAGNGAACCNCACCGANCGAATTGGGACCCAAGTTCCAACCGTTGATTTAAACACCGGCATTTACACCACAAGAACAAACGATNCATTACACCCCGGTTTCAAAAGTTCGATGCCAAATGGATNTNCACCATCGTGTGATTAGAGGTGNAGTATGACCAAACGTGNTTGGGGTATATNTCACCAAATT]

[+] EMBL AL931069             [CAGATCGNCCGAGGTTTACTGNGCTGGATAAGTATTCCACAGACGATGAAGGTTGCCTTTGCCTGTTGCCTGTGGTGGGCGTCGGCTGCCAGGCCACAAAACTACGTTCAAGAGGACTGGAACCATGTGTACCAGGTCGCCCTGCAGCGGGGCTACGTCGGCGGACGAGCCCCTGCTGACTGGACCGTTGCCGGTCCCGCTCGTCAACAGCTCGAGAACGTTCCGTTTGATCAGCCGTTGCGATCAAACAGTTCGTTCCCCAGTGGTCCCGAATGCTGCCCTGAGTGTGTTCCCACCTGCGTGCAGCNGCATGATGTTGGAATTGACCGCTGCTCTGTCCTGGTGCCAGAAAATTACTCCCCTTTAACCCCCCGGCAGGGAAGCCAAAAGGTGGTTATAACGTCGTTCCGCCCAAGGTGGAGTTATTTTACCAGTTTCCTTGCANAAACGCCTGTTTAACCCAAGNGAACCNCACCGANCGAATTGGGACCCAAGTTCCAACCGTTGATTTAAACACCGGCATTTACACCACAAGAACAAACGATNCATTACACCCCGGTTTCAAAAGTTCGATGCCAAATGGATNTNCACCATCGTGTGATTAGAGGTGNAGTATGACCAAACGTGNTTGGGGTATATNTCACCAAATT]




>consensus_3959#1
CAGATCGNCCGAGGTTTACTGNGCTGGATAAGTATTCCACAGACGATGAAGGTTGCCTTT
GCCTGTTGCCTGTGGTGGGCGTCGGCTGCCAGGCCACAAAACTACGTTCAAGAGGACTGG
AACCATGTGTACCAGGTCGCCCTGCAGCGGGGCTACGTCGGCGGACGAGCCCCTGCTGAC
TGGACCGTTGCCGGTCCCGCTCGTCAACAGCTCGAGAACGTTCCGTTTGATCAGCCGTTG
CGATCAAACAGTTCGTTCCCCAGTGGTCCCGAATGCTGCCCTGAGTGTGTTCCCACCTGC
GTGCAGCNGCATGATGTTGGAATTGACCGCTGCTCTGTCCTGGTGCCAGAAAATTACTCC
CCTTTAACCCCCCGGCAGGGAAGCCAAAAGGTGGTTATAACGTCGTTCCGCCCAAGGTGG
AGTTATTTTACCAGTTTCCTTGCANAAACGCCTGTTTAACCCAAGNGAACCNCACCGANC
GAATTGGGACCCAAGTTCCAACCGTTGATTTAAACACCGGCATTTACACCACAAGAACAA
ACGATNCATTACACCCCGGTTTCAAAAGTTCGATGCCAAATGGATNTNCACCATCGTGTG
ATTAGAGGTGNAGTATGACCAAACGTGNTTGGGGTATATNTCACCAAATT

consensusID : consensus_3959#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 523
fasta sequence

                              [TATGGCTCAGCAGATCGCAGAGGTTAATTTGCTGCTTGCGTTGTGGCCGTCGTGCCTGGNCAGGCCACAAAACTACGTCCAAGAGGACTGGAACCATGTGTACCAGGTCGCCCTGCAGCGAGGCTACGTCCGGCCGGACGAGCCCCTGCTGACTGGAACTGTTGCCTGGTCCCGCTCGTCAACCAGCTCGAGAACGTTCCAGTATTGATCAGCCCGTTGCGATCAACCAGATTCGTCCAAGCTGGTCCCAAATGCGCCCGAGGTGTTCCCGCCGGATGCAGCGCCANCCGTGGATGACGCGCATCGTCCCGTGCCAAGAAAATANTCCCCTTAAANCCCCGCAGNGAAGCAAAAGGTGTTCTCAAGTACTTCTGACAAATGGGATATTTTTGACACATTTTCTGGCAAAAACCCGTATTACCCAGGACAACCGAGATGGAGCCAAATTCAACCTTGATTTCAAGGCAAGACAATTTACGCCCAACACAAAGCTCTCACGCCACGGTNCAACCAATTCCCGTGC]

[+] EMBL AL696655             [TATGGCTCAGCAGATCGCAGAGGTTAATTTGCTGCTTGCGTTGTGGCCGTCGTGCCTGGNCAGGCCACAAAACTACGTCCAAGAGGACTGGAACCATGTGTACCAGGTCGCCCTGCAGCGAGGCTACGTCCGGCCGGACGAGCCCCTGCTGACTGGAACTGTTGCCTGGTCCCGCTCGTCAACCAGCTCGAGAACGTTCCAGTATTGATCAGCCCGTTGCGATCAACCAGATTCGTCCAAGCTGGTCCCAAATGCGCCCGAGGTGTTCCCGCCGGATGCAGCGCCANCCGTGGATGACGCGCATCGTCCCGTGCCAAGAAAATANTCCCCTTAAANCCCCGCAGNGAAGCAAAAGGTGTTCTCAAGTACTTCTGACAAATGGGATATTTTTGACACATTTTCTGGCAAAAACCCGTATTACCCAGGACAACCGAGATGGAGCCAAATTCAACCTTGATTTCAAGGCAAGACAATTTACGCCCAACACAAAGCTCTCACGCCACGGTNCAACCAATTCCCGTGC]




>consensus_3959#2
TATGGCTCAGCAGATCGCAGAGGTTAATTTGCTGCTTGCGTTGTGGCCGTCGTGCCTGGN
CAGGCCACAAAACTACGTCCAAGAGGACTGGAACCATGTGTACCAGGTCGCCCTGCAGCG
AGGCTACGTCCGGCCGGACGAGCCCCTGCTGACTGGAACTGTTGCCTGGTCCCGCTCGTC
AACCAGCTCGAGAACGTTCCAGTATTGATCAGCCCGTTGCGATCAACCAGATTCGTCCAA
GCTGGTCCCAAATGCGCCCGAGGTGTTCCCGCCGGATGCAGCGCCANCCGTGGATGACGC
GCATCGTCCCGTGCCAAGAAAATANTCCCCTTAAANCCCCGCAGNGAAGCAAAAGGTGTT
CTCAAGTACTTCTGACAAATGGGATATTTTTGACACATTTTCTGGCAAAAACCCGTATTA
CCCAGGACAACCGAGATGGAGCCAAATTCAACCTTGATTTCAAGGCAAGACAATTTACGC
CCAACACAAAGCTCTCACGCCACGGTNCAACCAATTCCCGTGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3959#1      CAGATCGNCCGAGGTTTACTGNGCTGGATAAGTATTCCACAGACGATGAAGGTTGCCTTT 60
consensus_3959#2      ----------------------------TATG-GCTCAGCAGATCGCAGAGGTTAA-TTT 30
consensus_3959#0      ------------------------------------------------------------
                                                                                  

consensus_3959#1      GCCTGTTGC-CTGTGGTGGGCGTCGGCTGCCAGGCCACAAAACTACGTTCAAGAGGACTG 119
consensus_3959#2      GCTGCTTGCGTTGTGGCCGTCGTGCCTGGNCAGGCCACAAAACTACGTCCAAGAGGACTG 90
consensus_3959#0      -------------------------------------------------------GACTG 5
                                                                             *****

consensus_3959#1      GAACCATGTGTACCAGGTCGCCCTGCAGCGGGGCTACGTCGG--CGGACGAGCCCCTGCT 177
consensus_3959#2      GAACCATGTGTACCAGGTCGCCCTGCAGCGAGGCTACGTCCGGCCGGACGAGCCCCTGCT 150
consensus_3959#0      GAACCATGTGTACCAGGTCGCCCTGCAGCGAGGCTACGTCCGGCCGGACGAGCCCCTGCT 65
                      ****************************** ********* *  ****************

consensus_3959#1      GACTGGA-CCGTTGCC-GGTCCCGCTCGTCAAC-AGCTCGAGAACGTTCCGTT--TGATC 232
consensus_3959#2      GACTGGAACTGTTGCCTGGTCCCGCTCGTCAACCAGCTCGAGAACGTTCCAGTATTGATC 210
consensus_3959#0      GACTGGA-CCGTTGCC-GGTCCCGCTCGTCAACCAGCTCGAGAACGTTCCGTT--TGATC 121
                      ******* * ****** **************** ****************  *  *****

consensus_3959#1      AGCC-GTTGCGATCAAACAGTTCGTTCCCCAGTGGTCCCGAATGCTGCCCTGAGTGTGTT 291
consensus_3959#2      AGCCCGTTGCGATCAACCAGATTCGTCCAAGCTGGTCCCAAATGCG--CCCGAG-GTGTT 267
consensus_3959#0      AGCCCGTTGCGATCAACCAGTTCGT--CCAGCTGGTCCCAAATGCG--CCCGAG-GTGTT 176
                      **** *********** *** *     *    ******* *****   ** *** *****

consensus_3959#1      CCCACCTGCGTGCAGCNGCATG-ATGTTGGAATTGACCGC------TGCTCTGTCCTGGT 344
consensus_3959#2      CCCGCCGG-ATGCAGCGCCAN-----CCGTGGATGACG--------CGCATCGTCCCG-T 312
consensus_3959#0      CCCGCCGCTGCAGCGCAGCGTGGATGACGCGCTCGTCCGTGCCAGAAATACTCCCTTAAC 236
                      *** **        **  *         *     * *                 *     

consensus_3959#1      GCCAGAAAATTACTCCCCTTTAACCCCCCGGCAGGGAAGCCAAAAGGTGGTTATAACGTC 404
consensus_3959#2      GCCAAGAAAATANTCCCCTTAAANCCCC--GCAGNGAAGC-AAAAGGTGTTCTCAA-GTA 368
consensus_3959#0      CCCGCAGGAGCAAGTGT-TTTAGTCTC---GCAAGGATATTTGACATTCTGCAAACCGTT 292
                       **     *  *      ** *  * *   ***  **      *   *      *  ** 

consensus_3959#1      GTTCCGCC--CAAGGTGGAGTTATTTTACCAGTTTCCTTGCANAAACGCCTGTTTAACCC 462
consensus_3959#2      CTTCTGAC--AAATGGGATATT-TTTGACACATTTTCTGGCAAAAACCCGTATT--ACCC 423
consensus_3959#0      ACCAGGACAACGAGATGGACCAATTCAACTGATTTA--AGCAGCATTACCCACACAACTC 350
                           * *    *   *      **  **   ***    ***  *   *       ** *

consensus_3959#1      AAGNGAACCNCACCGANCGAATTGGGACCCAAGTTCCAACCGTTGATTTAA-ACACCGGC 521
consensus_3959#2      AGGA---------CAACCGAGATGGAGCCAAA--TTCAACC-TTGATTTCA-AGGCAAGA 470
consensus_3959#0      TCACCCGTTCACCATCGTGCAATGGTGTGCGCTGTGTTGGTGTGTGTCTAACGTGTGGAT 410
                                        *   ***         *       *   * * *         

consensus_3959#1      ATTTACACCACAAGAACAAACGATNCATTACACC-CCGGTTTC---------AA-AAGTT 570
consensus_3959#2      CAATTTACGCCCAACACAAAG---CTCTCACGCC-ACGGTNCA---------ACCAATTC 517
consensus_3959#0      ATTACTATTCTTAAGAGCATTAGAACTTTAAATTGCTGGCTTCTTCTACCGGACTATTTC 470
                            *     *  *  *        * *       **             *  *  * 

consensus_3959#1      CGATGCCAAATGGATNTNCACCATCGTGTGATTAGAGGTGNAGTATGACCAAACGTGNTT 630
consensus_3959#2      CCGTGC------------------------------------------------------ 523
consensus_3959#0      CGGTACAAAACAGAGAGAGAGAGAGAGAAAGAGAGGAGAAAAACAAAACCAAGTGAAGCC 530
                      *  * *                                                      

consensus_3959#1      GGGGTATATNTCACCAAATT---------------------------------------- 650
consensus_3959#2      ------------------------------------------------------------
consensus_3959#0      GAACTCAAGGGCCCAATGCACCTCTCTGGAAACCATCTCGCGCAGGGCGCATTCAAGTGC 590
                                                                                  

consensus_3959#1      ------------------------------------------------------------
consensus_3959#2      ------------------------------------------------------------
consensus_3959#0      AACGACATCTCGGTACGAGCGCGCCGCTGTGCTGTGCGTCTGGGCTCTGGTCGGNTGTGT 650
                                                                                  

consensus_3959#1      ----------------------------------------------------------
consensus_3959#2      ----------------------------------------------------------
consensus_3959#0      TCACTGGATAGCATCAAAGATAGTGTATACTAGCAGGGAAAATAAATGTATTTTAGTT 708