cluster # 3960

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Anopheles gambiae
cluster # 3960 cluster # 3960 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3960#0 length = 951 sequences # 2

consensus_3960#1 length = 571 sequences # 1

consensusID : consensus_3960#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 951
fasta sequence

                              [CCGGTGTTGAACCGAATGTCGCGTCAAAACGTGGCAAGGGCGCGAGTGCAAAACCTGTCACGATGTGTCGATGCGAATGTGGTACGGGTTAGTTTGTGTTTTTTCTCTTTTGTTTTCATCTTTGAGAGTTTTCCAACAGTGGCACACCCGCGACGCAGAAGACATTCACACCGCCGGGGGGTGTCACTCTGTTTAGTGATAGTAGTTTATAGTTGAAATAAGTATGCGATTGTGTAAAATGAAGAATATTGAATTGAAATTACTTAAACAACACAATTAAGCGGAGGGGCTGGGCGCGATGTGATGAACACAGAGAGACAGAACACAGGTAAAAAGGGTGCCAAACAGAGGAAAATATTAACATGGAAGTGCATAGGGAGAATGAAGCACGGGAAATCAATAACAGGAAGCAAATCATCAATGAACGAACAACAAAACAGTAGCCAAGCCTAATCCCGATTAAGTAAAGCAGCATCTTTAGCGAAGTCGTTGCCTACAATTTATTTTGTTGGCCAAGTTCTTGGGATATGAGTACGACAGTACTCTGCTATTAGGCTTTACGTTGAGACACAGTTTGTTGCATTTTCTCTCACTACTACTGCGGCCTGGGGAAAGGGAAGTAAAGCCGG-CCCATTACGCCCCCCCCAAACCACGGGAAGAAAACTAACACATTCGACTTTCTGCGATATTTAATAATTAGCTCCCCCTAACCTAAGCATAACGAAATAATAATGCATTAGCAAACAAACAAACAAACAAAAAGGTATCTTATCTCACAGAGTAGTGTTTGTGGCCCTTTACTTGTCGCTCATACTCTTCTCTCTTGCATTGATATTCCAACGTTCTTCTAGCGCTCCGTAATCTATGTTGTGAGAGACAAAACAAAAAAACGAACGCAAAAACACAGGTTTAGCAGTAGATGTGTACTTAAAAGGTTTAACTAAATTTCGT]

[+] EMBL BM632813             [CCGGTGTTGAACCGAATGTCGCGTCAAAACGTGGCAAGGGCGCGAGTGCAAAACCTGTCACGATGTGTCGATGCGAATGTGGTACGGGTTAGTTTGTGTTTTTTCTCTTTTGTTTTCATCTTTGAGAGTTTTCCAACAGTGGCACACCCGCGACGCAGAAGACATTCACACCGCCGGGGGGTGTCACTCTGTTTAGTGATAGTAGTTTATAGTTGAAATAAGTATGCGATTGTGTAAAATGAAGAATATTGAATTGAAATTACTTAAACAACACAATTAAGCGGAGGGGCTGGGCGCGATGTGATGAACACAGAGAGACAGAACACAGGTAAAAAGGGTGCCAAACAGAGGAAAATATTAACATGGAAGTGCATAGGGAGAATGAAGCACGGGAAATCAATAACAGGAAGCAAATCATCAATGAACGAACAACAAAACAGTAGCCAAGCCTAATCCCGATTAAGTAAAGCAGCATCTTTAGCGAAGTCGTTGCCTACAATTTATTTTGTTGGCCAAGTTCTTGGGATATGAGTACGACAGTACTCTGCTATTAGGCTTTACGTTGAGACACAGTTTGTTGCATTTTCTCTCACTACTACTGCGGCCTGGGGAAAGGGAAGTAAAGCCGG CCCATTACGCCCCCC                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL BM599243             [                                                                                                                                                                                                                                                                                                                                                ccgGCCAAACAGAGGAAAATATTAACATGGAAGTGCATAGGGAGAATGAAGCACGGGAAATCAATAACAGGAAGCAAATCATCAATGAACGAACAACAAAACAGTAGCCAAGCTTAAGCCCGGTTAAGTAAAGCAGCATCTTCAGCGAGGTCGTTGCCTACAATTCATTTTGTTGGCCTAGTTCTTGCGATATGCG AC ACAGTACTCTGCTATCAGGCTTTACGTTGAGACACAGTTTGTTGCATTTTCTCTCACTACTACTGCGGCCTGGGGAAAGTGAAGTATAGTCGGACCCATTACGCCCCCCCCAAACCACGGGAAGAAAACTAACACATTCGACTTTCTGCGATATTTAATAATTAGCTCCCCCTAACCTAAGCATAACGAAATAATAATGCATTAGCAAACAAACAAACAAACAAAAAGGTATCTTATCTCACAGAGTAGTGTTTGTGGCCCTTTACTTGTCGCTCATACTCTTCTCTCTTGCATTGATATTCCAACGTTCTTCTAGCGCTCCGTAATCTATGTTGTGAGAGACAAAACAAAAAAACGAACGCAAAAACACAGGTTTAGCAGTAGATGTGTACTTAAAAGGTTTAACTAAATTTCGT]




>consensus_3960#0
CCGGTGTTGAACCGAATGTCGCGTCAAAACGTGGCAAGGGCGCGAGTGCAAAACCTGTCA
CGATGTGTCGATGCGAATGTGGTACGGGTTAGTTTGTGTTTTTTCTCTTTTGTTTTCATC
TTTGAGAGTTTTCCAACAGTGGCACACCCGCGACGCAGAAGACATTCACACCGCCGGGGG
GTGTCACTCTGTTTAGTGATAGTAGTTTATAGTTGAAATAAGTATGCGATTGTGTAAAAT
GAAGAATATTGAATTGAAATTACTTAAACAACACAATTAAGCGGAGGGGCTGGGCGCGAT
GTGATGAACACAGAGAGACAGAACACAGGTAAAAAGGGTGCCAAACAGAGGAAAATATTA
ACATGGAAGTGCATAGGGAGAATGAAGCACGGGAAATCAATAACAGGAAGCAAATCATCA
ATGAACGAACAACAAAACAGTAGCCAAGCCTAATCCCGATTAAGTAAAGCAGCATCTTTA
GCGAAGTCGTTGCCTACAATTTATTTTGTTGGCCAAGTTCTTGGGATATGAGTACGACAG
TACTCTGCTATTAGGCTTTACGTTGAGACACAGTTTGTTGCATTTTCTCTCACTACTACT
GCGGCCTGGGGAAAGGGAAGTAAAGCCGGCCCATTACGCCCCCCCCAAACCACGGGAAGA
AAACTAACACATTCGACTTTCTGCGATATTTAATAATTAGCTCCCCCTAACCTAAGCATA
ACGAAATAATAATGCATTAGCAAACAAACAAACAAACAAAAAGGTATCTTATCTCACAGA
GTAGTGTTTGTGGCCCTTTACTTGTCGCTCATACTCTTCTCTCTTGCATTGATATTCCAA
CGTTCTTCTAGCGCTCCGTAATCTATGTTGTGAGAGACAAAACAAAAAAACGAACGCAAA
AACACAGGTTTAGCAGTAGATGTGTACTTAAAAGGTTTAACTAAATTTCGT

consensusID : consensus_3960#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 571
fasta sequence

                              [ATTACGCCCCCCCCCCCCCCAAACCACGGGAAGAAAACTAACACATTCGACTTTCTGCGATATTTAATAATTAGCTCCCCCTAACCTAAGCATAACGAAATAATACTGCATTAGCAAACAACACAGGTTTAGCAGTAGATGTGTACTTAAACGGTTTAACTAAATTTCGTGGCATAAAATAAGCCTCACATACTAACGTTGTAGAATTCAATCGAAATTTGATCGTTTCTGTTTGTTCGTGAACGTTTTGGCACTTCCGGTAAGCGGATTTTCGGGATCGGATCTTTGGAGCAAGCAAACCCAGAAAGCGAAAGAGTCAGATGAATTTTACGAAAACACGAACACAAATGCGCACACCCTGCAAGCGTGAAAGAGGAAGGAAGACGGTGATTTGCGCAACAGCAGCAAGCACACAGAGGGACACAATTTGTGGAATATCATTTTTATACAACTTGAAAACCAACCCTGCACACACATACACCACTTTTACACACATCCCCTCATCTCATACATGCATCATATGTAGTCAGTGTGCGATAGGGAAGGATAATAGCACAAAAGCGAAGCGGGA]

[+] EMBL BX612741             [ATTACGCCCCCCCCCCCCCCAAACCACGGGAAGAAAACTAACACATTCGACTTTCTGCGATATTTAATAATTAGCTCCCCCTAACCTAAGCATAACGAAATAATACTGCATTAGCAAACAACACAGGTTTAGCAGTAGATGTGTACTTAAACGGTTTAACTAAATTTCGTGGCATAAAATAAGCCTCACATACTAACGTTGTAGAATTCAATCGAAATTTGATCGTTTCTGTTTGTTCGTGAACGTTTTGGCACTTCCGGTAAGCGGATTTTCGGGATCGGATCTTTGGAGCAAGCAAACCCAGAAAGCGAAAGAGTCAGATGAATTTTACGAAAACACGAACACAAATGCGCACACCCTGCAAGCGTGAAAGAGGAAGGAAGACGGTGATTTGCGCAACAGCAGCAAGCACACAGAGGGACACAATTTGTGGAATATCATTTTTATACAACTTGAAAACCAACCCTGCACACACATACACCACTTTTACACACATCCCCTCATCTCATACATGCATCATATGTAGTCAGTGTGCGATAGGGAAGGATAATAGCACAAAAGCGAAGCGGGA]




>consensus_3960#1
ATTACGCCCCCCCCCCCCCCAAACCACGGGAAGAAAACTAACACATTCGACTTTCTGCGA
TATTTAATAATTAGCTCCCCCTAACCTAAGCATAACGAAATAATACTGCATTAGCAAACA
ACACAGGTTTAGCAGTAGATGTGTACTTAAACGGTTTAACTAAATTTCGTGGCATAAAAT
AAGCCTCACATACTAACGTTGTAGAATTCAATCGAAATTTGATCGTTTCTGTTTGTTCGT
GAACGTTTTGGCACTTCCGGTAAGCGGATTTTCGGGATCGGATCTTTGGAGCAAGCAAAC
CCAGAAAGCGAAAGAGTCAGATGAATTTTACGAAAACACGAACACAAATGCGCACACCCT
GCAAGCGTGAAAGAGGAAGGAAGACGGTGATTTGCGCAACAGCAGCAAGCACACAGAGGG
ACACAATTTGTGGAATATCATTTTTATACAACTTGAAAACCAACCCTGCACACACATACA
CCACTTTTACACACATCCCCTCATCTCATACATGCATCATATGTAGTCAGTGTGCGATAG
GGAAGGATAATAGCACAAAAGCGAAGCGGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3960#0      CCGGTGTTGAACCGAATGTCGCGTCAAAACGTGGCAAGGGCGCGAGTGCAA--AACCTGT 58
consensus_3960#1      -----ATTACGCCCCCCCCCCCCCCAAACCACGGGAAGAAAACTAACACATTCGACTTTC 55
                            **   **      * *  **** *  ** ***    * *   **    ** *  

consensus_3960#0      CACGATGTGTCGATGCGAATGTGGTACGGGTTAGT--TTGTGTTTTTTCTCTTTTGTTTT 116
consensus_3960#1      TGCGATATTTAATAATTAGCTCCCCCTAACCTAAGCATAACGAAATAATACTGCATTAGC 115
                        **** * *       *             **    *   *   *    **    *   

consensus_3960#0      CATCTTTGAGAGTTTTCCAACAGTGGCACACCCGCGACGCAGAAGACATTCACACCGCCG 176
consensus_3960#1      AAACAACACAGGTTTAGCAGTAGATGTGTACTT---AAACGGTTTAACTAAATTTCGTGG 172
                       * *       ****  **  **  *   **     *  * *   *  *  *   **  *

consensus_3960#0      GGGGGTGTCACTCTGTTTAGTGATAGTAGTTTATAGTTGAAATAAGTATGCGATTGTGTA 236
consensus_3960#1      CATAAAATAAGCC--TCACATACTAACGTTGTAGAATTCAATCGAA-ATTTGATCGTTTC 229
                             * *  *  *    *  **    * ** * ** **   *  **  *** ** * 

consensus_3960#0      AAATGAAGAATATTGAATTGAAATTACTTAAACAACACAATTAAGCGGAGGGGCTGGGCG 296
consensus_3960#1      ----------TGTTTGTTCGTGAACGTTTTGGCACTTCCGGTAAGCGGATTTTCGGGATC 279
                                * **   * *  *    **   **   *   ********    * **   

consensus_3960#0      CGATGTGATGAACACAGAGAGACAGAACACAGGTAAAAAGGGTGCCAAACAGAGGAAAAT 356
consensus_3960#1      GGATCTTTGGAGCAAGCAAACCCAGAAAGCGAAAGAGTCAGATG--AATTTTACGAAAAC 337
                       *** *   ** **   * *  *****  *     *    * **  **    * ***** 

consensus_3960#0      ATTAACATGGAAGTGCATAGGGAGAATGAAGCACGGGAAATCAATAACAGGAAGCAAATC 416
consensus_3960#1      ACGAACACAAATGCGCACACCCTGCA---AGCGTGAAAGAGGAA-----GGAAGACGGTG 389
                      *  ****   * * *** *    * *   ***  *  * *  **     *****    * 

consensus_3960#0      ATCAATGAACGAACAACAAAACAGTAGCCAAGCCTAATCCCGATTAAGTAAAGCAGCATC 476
consensus_3960#1      ATTTGCGCAACAGCAGCAAGCACACAGAGGGACACAATTT-------GTGGAATATCATT 442
                      **    * *  * ** ***      **     *  ***         **  *  * *** 

consensus_3960#0      TTTAGCGAAGTCGTTGCCTACAATTTATTTTGTTGGCCAAGTTCTTGGGATATGAGTACG 536
consensus_3960#1      TTTA--------------TACAA-----CTTGAAAACCAA---CCCTGCACACACATACA 480
                      ****              *****      ***    ****   *   * * *    *** 

consensus_3960#0      ACAGTACTCTGCTATTAGGCTTTACGTTGAGACACAGTTTGTTGCATTTTCTCTCACTAC 596
consensus_3960#1      CCACT--TTTACACACATCCCCTCATCTCATACAT-GCATCATATGTAGTCAGTGTGCGA 537
                       ** *  * * *    *  *  *    * * ***  *  *  *   *  **  *      

consensus_3960#0      TACTGCGGCCTGGGGAAAGGGAAGTAAAGCCGGCCCATTACGCCCCCCCCAAACCACGGG 656
consensus_3960#1      TAGGGAAGGATAATAGCACAAAAGCGAAGCGGGA-------------------------- 571
                      **  *  *  *      *   ***  **** **                           

consensus_3960#0      AAGAAAACTAACACATTCGACTTTCTGCGATATTTAATAATTAGCTCCCCCTAACCTAAG 716
consensus_3960#1      ------------------------------------------------------------
                                                                                  

consensus_3960#0      CATAACGAAATAATAATGCATTAGCAAACAAACAAACAAACAAAAAGGTATCTTATCTCA 776
consensus_3960#1      ------------------------------------------------------------
                                                                                  

consensus_3960#0      CAGAGTAGTGTTTGTGGCCCTTTACTTGTCGCTCATACTCTTCTCTCTTGCATTGATATT 836
consensus_3960#1      ------------------------------------------------------------
                                                                                  

consensus_3960#0      CCAACGTTCTTCTAGCGCTCCGTAATCTATGTTGTGAGAGACAAAACAAAAAAACGAACG 896
consensus_3960#1      ------------------------------------------------------------
                                                                                  

consensus_3960#0      CAAAAACACAGGTTTAGCAGTAGATGTGTACTTAAAAGGTTTAACTAAATTTCGT 951
consensus_3960#1      -------------------------------------------------------