cluster # 3961

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Anopheles gambiae
cluster # 3961 cluster # 3961 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_3961#0 length = 737 sequences # 2

consensus_3961#1 length = 672 sequences # 1

consensusID : consensus_3961#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 737
fasta sequence

                              [CAGAATCGCACGAGGTGNNAGCTGCAATTTAATGGACGATTTACCGCCTGAGCCCACTCCGAATAACGAATTTTACGATGGAAATATACCTTCGATAACACAAACCGATCAGATTGCATCAAGACAACGTTCCCAGAATGCTCGAGCGCTACAAGAAGAAGAGTATGATACAAACCATCGGCGACGTGGTATGGCAATCATCTTAAACCATGAGAATTTCGAGTTGATGAGCAAACGCGAAGGTACCAACAGGGGATCGTGATGCAGCAACAGCGGTCTTAACCAGTATGCAGTTTGACGTTCGTGTCTACAATGATCTTGGTCGTGATGAGCTTTTCTGCGTGTTGCTTGCTCTTGCCAGTGAGGATCACTCCGATTGCGATTGTTCTATTAGTTACTAGTTAAGGCCCGGTAAAATCTACCGGATGTCCTCAAATTTAGAATTATTTTCAAACTCTACACGTTCAGTGGCAACAACCATAACTCAAACACCTATTTGTTCTTATTTGTTCTTACAACTGTGTTAACCTTGTAACTTCCTGGTTTTTACAGTTCTTACTGTACATTGCAGAACCGTTAAATATCGATGAGGCTACTTTTGAGCCATACTGATGTAAATCTTAAATTTTAAATAACCATAAAAAACCAAGTCACGCAATTTTGTAATTTTTTTAACTGGTGTTCAAAAAATAANGGTTATTTGTTACGCACGTAAAGTACCAATGAATCTTATTTAC]

[+] EMBL AL696681             [CAGAATCGCACGAGGTGNNAGCTGCAATTTAATGGACGATTTACCGCCTGAGCCCACTCCGAATAACGAATTTTACGATGGAAATATACCTTCGATAACACAAACCGATCAGATTGCATCAAGACAACGTTCCCAGAATGCTCGAGCGCTACAAGAAGAAGAGTATGATACAAACCATCGGCGACGTGGTATGGCAATCATCTTAAACCATGAGAATTTCGAGTTGATGAGCAAACGCGAAGGTACCAACAGGGGATCGTGATGCAGCAACAGCGGTCTTAACCAGTATGCAGTTTGACGTTCGTGTCTACAATGATCTTGGTCGTGATGAGCTTTTCTGCGTGTTGCTTGCTCTTGCCAGTGAGGATCACTCCGATTGCGATTGTTCTATTAGTTACTAGTTAAGGCCCGGTAAAATCTACCGGATGTCCTCAAATTTAGAATTATTTTCAAACTCTACACGTTCAGTGGCAACAACCATAACTCAAACACCTATTTGTTCTTATTTGTTCTTACAACTGTGTTAACCTTGTAACTTCCTGGTTTTTACAGTTCTTACTGTACATTGCAG                                                                                                                                                                      ]
[+] EMBL BX620854             [                                          ACCGCCTGAGCCCACTCCGAATAACGAATTTTACGATGGAAATATACCTTCGATAACACAAACCGATCAGATTGCATCAAGACAACGTTCCCAGAATGCTCGAGCGCTACAAGAAGAAGAGTATGATACAAACCATCGGCGACGTGGTATGGCAATCATCTTAAACCATGAGAATTTCGAGTTGATGAGCAAACGCGAAGGTACCAACA GGGATCGTGATGCAGCAACAGCGGTCTTAACCAGTATGCAGTTTGACGTTCGTGTCTACAATGATCTTGGTCGTGATGAGCTTTTCTGCGTGTTGCTTGCTCTTGCCAGTGAGGATCACTCCGATTGCGATTGTT TATTAGTTACTAGTTAAGGCCCGGTAAAATCTACCGGATGTCCTCAAATTTAGAATTATTTTCAAACTCTACACGTCCAGTGGCAACAACCATAACTCAAACACCTATTTGTTCTTATTTGTTCTTACAACTGTGTTAACCTTGTAACTTCCTGGTTTTTACAGTTCTTACTGTACATTGCAGAACCGTTAAATATCGATGAGGCTACTTTTGAGCCATACTGATGTAAATCTTAAATTTTAAATAACCATAAAAAACCAAGTCACGCAATTTTGTAATTTTTTTAACTGGTGTTCAAAAAATAANGGTTATTTGTTACGCACGTAAAGTACCAATGAATCTTATTTAC]




>consensus_3961#0
CAGAATCGCACGAGGTGNNAGCTGCAATTTAATGGACGATTTACCGCCTGAGCCCACTCC
GAATAACGAATTTTACGATGGAAATATACCTTCGATAACACAAACCGATCAGATTGCATC
AAGACAACGTTCCCAGAATGCTCGAGCGCTACAAGAAGAAGAGTATGATACAAACCATCG
GCGACGTGGTATGGCAATCATCTTAAACCATGAGAATTTCGAGTTGATGAGCAAACGCGA
AGGTACCAACAGGGGATCGTGATGCAGCAACAGCGGTCTTAACCAGTATGCAGTTTGACG
TTCGTGTCTACAATGATCTTGGTCGTGATGAGCTTTTCTGCGTGTTGCTTGCTCTTGCCA
GTGAGGATCACTCCGATTGCGATTGTTCTATTAGTTACTAGTTAAGGCCCGGTAAAATCT
ACCGGATGTCCTCAAATTTAGAATTATTTTCAAACTCTACACGTTCAGTGGCAACAACCA
TAACTCAAACACCTATTTGTTCTTATTTGTTCTTACAACTGTGTTAACCTTGTAACTTCC
TGGTTTTTACAGTTCTTACTGTACATTGCAGAACCGTTAAATATCGATGAGGCTACTTTT
GAGCCATACTGATGTAAATCTTAAATTTTAAATAACCATAAAAAACCAAGTCACGCAATT
TTGTAATTTTTTTAACTGGTGTTCAAAAAATAANGGTTATTTGTTACGCACGTAAAGTAC
CAATGAATCTTATTTAC

consensusID : consensus_3961#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 672
fasta sequence

                              [CCGCCCACGCGTCCGGCAATTTAATGGACGATTTACCGCCTGAGCCCACTCCGGATAACGAATTTTACGATGGAAATATACCTTCGATAACACAAACCGATCAGATTGCATCAAGACAACGTTCCCAGAATGCTCGAGCGCTACAAGAAGAAGAGTATGATACAAACCATCGGCGACGTGGTATGGCAATCATCTTAAACCATGAGAATTTCGAGTTGATGAGCAAACGCGAAGGTACCAACAGGGATCGTGATGCAGCAACAGCGGTCTTAACCAGTATGCAGTTTGACGTTCGTGTCTACAATGATCTTGGTCGTGATGAGCTTTTCTGCGTGTTGCTTGCTCTTGCCAGTGAGGATCACTCCGATTGCGATTGTTTATTAGTTATGCTAATGACCCATGGAGACGATGACGTTTTGTATGCGTACGATGGACCTTACAGTGTAGACAAATTATGGGAGAGTTTTATGGGCAACGCATGCACTACGCTACTTGGCAAGCCGAAGCTGTTTTTCGTCCAAGCCTGCCGTGGAAGCACATTCGATAAAGGGGTGAAGTTGGGCTGTCGCGATTTGGACAGTGACCATTTCTCATCGCACAAGTATGTGATTCCGACTACGGCCGATTTGTTGGTGATGTACTCTTCATATAAGGGCCATGTGTCATGGAGAA]

[+] EMBL BM599894             [CCGCCCACGCGTCCGGCAATTTAATGGACGATTTACCGCCTGAGCCCACTCCGGATAACGAATTTTACGATGGAAATATACCTTCGATAACACAAACCGATCAGATTGCATCAAGACAACGTTCCCAGAATGCTCGAGCGCTACAAGAAGAAGAGTATGATACAAACCATCGGCGACGTGGTATGGCAATCATCTTAAACCATGAGAATTTCGAGTTGATGAGCAAACGCGAAGGTACCAACAGGGATCGTGATGCAGCAACAGCGGTCTTAACCAGTATGCAGTTTGACGTTCGTGTCTACAATGATCTTGGTCGTGATGAGCTTTTCTGCGTGTTGCTTGCTCTTGCCAGTGAGGATCACTCCGATTGCGATTGTTTATTAGTTATGCTAATGACCCATGGAGACGATGACGTTTTGTATGCGTACGATGGACCTTACAGTGTAGACAAATTATGGGAGAGTTTTATGGGCAACGCATGCACTACGCTACTTGGCAAGCCGAAGCTGTTTTTCGTCCAAGCCTGCCGTGGAAGCACATTCGATAAAGGGGTGAAGTTGGGCTGTCGCGATTTGGACAGTGACCATTTCTCATCGCACAAGTATGTGATTCCGACTACGGCCGATTTGTTGGTGATGTACTCTTCATATAAGGGCCATGTGTCATGGAGAA]




>consensus_3961#1
CCGCCCACGCGTCCGGCAATTTAATGGACGATTTACCGCCTGAGCCCACTCCGGATAACG
AATTTTACGATGGAAATATACCTTCGATAACACAAACCGATCAGATTGCATCAAGACAAC
GTTCCCAGAATGCTCGAGCGCTACAAGAAGAAGAGTATGATACAAACCATCGGCGACGTG
GTATGGCAATCATCTTAAACCATGAGAATTTCGAGTTGATGAGCAAACGCGAAGGTACCA
ACAGGGATCGTGATGCAGCAACAGCGGTCTTAACCAGTATGCAGTTTGACGTTCGTGTCT
ACAATGATCTTGGTCGTGATGAGCTTTTCTGCGTGTTGCTTGCTCTTGCCAGTGAGGATC
ACTCCGATTGCGATTGTTTATTAGTTATGCTAATGACCCATGGAGACGATGACGTTTTGT
ATGCGTACGATGGACCTTACAGTGTAGACAAATTATGGGAGAGTTTTATGGGCAACGCAT
GCACTACGCTACTTGGCAAGCCGAAGCTGTTTTTCGTCCAAGCCTGCCGTGGAAGCACAT
TCGATAAAGGGGTGAAGTTGGGCTGTCGCGATTTGGACAGTGACCATTTCTCATCGCACA
AGTATGTGATTCCGACTACGGCCGATTTGTTGGTGATGTACTCTTCATATAAGGGCCATG
TGTCATGGAGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_3961#0      CAGAATCGCACGAGGTGNNAGCTGCAATTTAATGGACGATTTACCGCCTGAGCCCACTCC 60
consensus_3961#1      -----CCGCCC---ACGCGTCCGGCAATTTAATGGACGATTTACCGCCTGAGCCCACTCC 52
                            *** *     *    * *************************************

consensus_3961#0      GAATAACGAATTTTACGATGGAAATATACCTTCGATAACACAAACCGATCAGATTGCATC 120
consensus_3961#1      GGATAACGAATTTTACGATGGAAATATACCTTCGATAACACAAACCGATCAGATTGCATC 112
                      * **********************************************************

consensus_3961#0      AAGACAACGTTCCCAGAATGCTCGAGCGCTACAAGAAGAAGAGTATGATACAAACCATCG 180
consensus_3961#1      AAGACAACGTTCCCAGAATGCTCGAGCGCTACAAGAAGAAGAGTATGATACAAACCATCG 172
                      ************************************************************

consensus_3961#0      GCGACGTGGTATGGCAATCATCTTAAACCATGAGAATTTCGAGTTGATGAGCAAACGCGA 240
consensus_3961#1      GCGACGTGGTATGGCAATCATCTTAAACCATGAGAATTTCGAGTTGATGAGCAAACGCGA 232
                      ************************************************************

consensus_3961#0      AGGTACCAACAGGGGATCGTGATGCAGCAACAGCGGTCTTAACCAGTATGCAGTTTGACG 300
consensus_3961#1      AGGTACCAACAGGG-ATCGTGATGCAGCAACAGCGGTCTTAACCAGTATGCAGTTTGACG 291
                      ************** *********************************************

consensus_3961#0      TTCGTGTCTACAATGATCTTGGTCGTGATGAGCTTTTCTGCGTGTTGCTTGCTCTTGCCA 360
consensus_3961#1      TTCGTGTCTACAATGATCTTGGTCGTGATGAGCTTTTCTGCGTGTTGCTTGCTCTTGCCA 351
                      ************************************************************

consensus_3961#0      GTGAGGATCACTCCGATTGCGATTGTTCTATTAGTTACTAGTTAAGGCCCGGTAAAATCT 420
consensus_3961#1      GTGAGGATCACTCCGATTGCGATTGTT-TATTAGTTAT--GCTAATGACCCATGGAGACG 408
                      *************************** *********   * *** * **  *  *  * 

consensus_3961#0      ACCGGATGTCCT-CAAATTTAGAATTATTTTCAAACTCTACACGTTCAGTGGCAACAACC 479
consensus_3961#1      AT--GACGTTTTGTATGCGTACGATGGACCTTACAGTGTAGACAAATTATGGGAG-AGTT 465
                      *   ** **  *  *    **  **     * * * * ** **      *** *  *   

consensus_3961#0      ATAACTCAAACACCTATTTGTTCTTATTTGTTCTTACAACTGTGTTAACCTTGTAACTTC 539
consensus_3961#1      TTATGGGCAACGCATGCACTACGCTACTTG-------------GCAAGCC--GAAGCTGT 510
                       **     *** * *         ** ***             *  * **  * * **  

consensus_3961#0      CTGGTTTTTACAGTTCTTACTGTACATTGCAGAACCGTTAAATATCGATGAGGCTACTTT 599
consensus_3961#1      TT--TTCGTCCAAG-CCTGCCGTGGAA-GCACATTCGATAAAGG--GGTGAAGTTGGGCT 564
                       *  **  * **   * * * **  *  *** *  ** ****    * *** * *    *

consensus_3961#0      TGAGCCATACTGAT-GTAAATCTTAAATTTTAAATAACCATAAAAAACCAAGTCACGCAA 658
consensus_3961#1      GTCGCGATTTGGACAGTGACCATTTCTCATCGCACAAGTATGTGATTCCGACTACGGCCG 624
                         ** **   **  ** *   **     *   * **  **   *  ** * *   **  

consensus_3961#0      TTTTGTAATTTTTTTAACTGGTGTTCAAAAAATAANGGTTATTTGTTACGCACGTAAAGT 718
consensus_3961#1      ATTTGTTGGTGAT-------GTACTCTTCATATAAGGGCCATGTGTCATGGAGAA----- 672
                       *****   *  *       **  **   * **** **  ** *** * * *        

consensus_3961#0      ACCAATGAATCTTATTTAC 737
consensus_3961#1      -------------------