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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3967#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 667 fasta sequence
[GCAAGAATTGNCCGAGGNTTAATCGGACATGAGCTTCTTTGCGGAAACGCCGAGCAAGTCGCTTATCTCGGACTCGGGTGTGACGCTGTCGCCCTCGTTGCGCGATCCGCTGCGTGAAAGCAGAGACTCCTGCTCGACGGTAACGAGGGTGGCAAGGAATCATCGGCCAACAAGTCCACCGTCAAGTCACCGGTGCCCGTCGACCCGAAATGGGAAAAGTTTGCGTGTGGCAATGACGCGCGATCATATGATCGTTTCGCAGCAAGCACACGAGCTGCCTGAATAAAGACATCGCTCCAGCCACGATCGTTGAATTTCTACAAGTAGAAGACGATTGACACACACGCACACCCGTGCGTGGTGGTTGCTGATGTCCCACTTTATTGTGCAAAATGCAATCGATTTGAAATGGGTAGAATCGTTGCTCTTTAAACCTTAAGTTAAGTGTTAGGACAGCGGTACAGCAGCGTGTGCACCGTGCGCGTGGTTAATGTTAAGCAAACGATTCTTCCCCCCGTCAGAAGTCGTATTCTTCTGGTGGTTAGTTTAGACGGNGGGAATTGGGGAAAACGGGGTACGCGTTGCTCTCTTACCTAAAGTCCGCAAGAGGACGAGTTTATGGTAGAGGGCATCTAAAGTAGGAAGTAAGCGTCTTGAAACTAACCAA]
[+] EMBL AL696930 [GCAAGAATTGNCCGAGGNTTAATCGGACATGAGCTTCTTTGCGGAAACGCCGAGCAAGTCGCTTATCTCGGACTCGGGTGTGACGCTGTCGCCCTCGTTGCGCGATCCGCTGCGTGAAAGCAGAGACTCCTGCTCGACGGTAACGAGGGTGGCAAGGAATCATCGGCCAACAAGTCCACCGTCAAGTCACCGGTGCCCGTCGACCCGAAATGGGAAAAGTTTGCGTGTGGCAATGACGCGCGATCATATGATCGTTTCGCAGCAAGCACACGAGCTGCCTGAATAAAGACATCGCTCCAGCCACGATCGTTGAATTTCTACAAGTAGAAGACGATTGACACACACGCACACCCGTGCGTGGTGGTTGCTGATGTCCCACTTTATTGTGCAAAATGCAATCGATTTGAAATGGGTAGAATCGTTGCTCTTTAAACCTTAAGTTAAGTGTTAGGACAGCGGTACAGCAGCGTGTGCACCGTGCGCGTGGTTAATGTTAAGCAAACGATTCTTCCCCCCGTCAGAAGTCGTATTCTTCTGGTGGTTAGTTTAGACGGNGGGAATTGGGGAAAACGGGGTACGCGTTGCTCTCTTACCTAAAGTCCGCAAGAGGACGAGTTTATGGTAGAGGGCATCTAAAGTAGGAAGTAAGCGTCTTGAAACTAACCAA]
consensusID : consensus_3967#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 625 fasta sequence
[CGTCAAACGAGCGGCAGTTAAAACGACACTAGTCTATTAAGCACGCCAGTTCCAGCGAAGGATGTGTCGATCAAGATGGAAGCGAAGAAGGATCANCGAGAAGGCAGCTGAAAATGAAGAGGATGGCAAAACGAAAACACCGCTAAAGGAGAGCGGCAAACCTGTGCCGATCGAACCGCGCACGCCGACACCGTTCAAGAACGCAATGGCCGAGCTGGGAAAGAGACGTTCCGAGATCTACATCCCACCGAGTCCGGCACGTATCGGCGAGGACATTGCNGAGATCATGAACCAAGAGCAGGCAAGCGAAACTTCCTCCACGCTGGCAAGTGGCAGCGACACATCGGCCGGCAACAAAACGGTCATCAGCAACAATGGCAGTGGCACGCAAACGACAGATTCGAAGGAAAACACACTTCCCTCACGAAGCGGACAGGTGTCGCCGCGCATGAACAAGAAGGCGTCCTCTTCCTCCGTCTTTTCGCAGCAGTGGGAAAATTCGGACATGAGCTTCTTTGCGGAAACGCCGAGCAAGTCGCTTATCTCGGACTCGGGTGTGACGCTGTCGCCCTCGTTGCGCGATCCGCTGCGTGAAGCAGAGCTCCTGCTCGACGGTAACGAAGGT]
[+] EMBL BX627337 [CGTCAAACGAGCGGCAGTTAAAACGACACTAGTCTATTAAGCACGCCAGTTCCAGCGAAGGATGTGTCGATCAAGATGGAAGCGAAGAAGGATCANCGAGAAGGCAGCTGAAAATGAAGAGGATGGCAAAACGAAAACACCGCTAAAGGAGAGCGGCAAACCTGTGCCGATCGAACCGCGCACGCCGACACCGTTCAAGAACGCAATGGCCGAGCTGGGAAAGAGACGTTCCGAGATCTACATCCCACCGAGTCCGGCACGTATCGGCGAGGACATTGCNGAGATCATGAACCAAGAGCAGGCAAGCGAAACTTCCTCCACGCTGGCAAGTGGCAGCGACACATCGGCCGGCAACAAAACGGTCATCAGCAACAATGGCAGTGGCACGCAAACGACAGATTCGAAGGAAAACACACTTCCCTCACGAAGCGGACAGGTGTCGCCGCGCATGAACAAGAAGGCGTCCTCTTCCTCCGTCTTTTCGCAGCAGTGGGAAAATTCGGACATGAGCTTCTTTGCGGAAACGCCGAGCAAGTCGCTTATCTCGGACTCGGGTGTGACGCTGTCGCCCTCGTTGCGCGATCCGCTGCGTGAAGCAGAGCTCCTGCTCGACGGTAACGAAGGT]
consensusID : consensus_3967#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 526 fasta sequence
[TCGCCCCGAGGCGATCAGATGGAAGCGAAGAAGGATCAGGAGAAGGCAGCTGAAAATGAAGAGGATGGCAAAACGAAAACACCGCTAAAGGAGAGCGGCAAACCTGTGCCGATCGAACCGCGCACGCCGACACCGTTCAAGAACGCAATGGCCGAGCTGGGAAAGAGACGTTCCGAGATCTACATCCCACCGAGTCCGGCACGTATCGGCGAGGACATTGCGGAGATCATGAACCAAGAGCAGGCAAGCTGAAACTTCCTCCACGCTGGCAAGTGGCAGCGACACATCGGCCGGCAACAAAACGGTCATCAGCAACAATGGCAGTGGCACGCAAACGACAGATTCGAAGGAAAACACACTTCCCTCACGAAGCGGACAGGTGTCGCCGCGCATGAACAAGAAGGCGTCCTCTTCCTCCGTCTTTTCGCAGCAGTGGGAAAATTCGGACATGAGCTTCTTTGCGGAAACGCCGAGCAAGTCGCTTATCTCGGACTCGGGTGTGACGCTGTCGCCCTCGTTGCGCGAT]
[+] EMBL AL931324 [TCGCCCCGAGGCGATCAGATGGAAGCGAAGAAGGATCAGGAGAAGGCAGCTGAAAATGAAGAGGATGGCAAAACGAAAACACCGCTAAAGGAGAGCGGCAAACCTGTGCCGATCGAACCGCGCACGCCGACACCGTTCAAGAACGCAATGGCCGAGCTGGGAAAGAGACGTTCCGAGATCTACATCCCACCGAGTCCGGCACGTATCGGCGAGGACATTGCGGAGATCATGAACCAAGAGCAGGCAAGCTGAAACTTCCTCCACGCTGGCAAGTGGCAGCGACACATCGGCCGGCAACAAAACGGTCATCAGCAACAATGGCAGTGGCACGCAAACGACAGATTCGAAGGAAAACACACTTCCCTCACGAAGCGGACAGGTGTCGCCGCGCATGAACAAGAAGGCGTCCTCTTCCTCCGTCTTTTCGCAGCAGTGGGAAAATTCGGACATGAGCTTCTTTGCGGAAACGCCGAGCAAGTCGCTTATCTCGGACTCGGGTGTGACGCTGTCGCCCTCGTTGCGCGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3967#1 ----------------------CGTCAAACGAGCGGCAGTTAAAACGACACTAGTCTATT 38
consensus_3967#2 ------------------------------------------------------------
consensus_3967#0 GCAAGAATTGNCCGAGGNTTAATCGGACATGAGCTTCTTTGCGGAAACGCCGAGCAAGTC 60
consensus_3967#1 AAGCACGCCAGTTCCAGCGAAGGATGTGTCGATCAAGATG---GAAGCGAAGAAGGATCA 95
consensus_3967#2 ------------------TCGCCCCGAGGCGATCA-GATG---GAAGCGAAGAAGGATCA 38
consensus_3967#0 GCTTATCTCGGACTCGGGTGTGACGCTGTCGCCCTCGTTGCGCGATCCGCTGCGTGAAAG 120
* ** * * ** ** ** * **
consensus_3967#1 NCGAGAAGGCAGCT-GAAAATGAAGAGGATGGCAAAACGAAAACACCGCTAAAGGAGAGC 154
consensus_3967#2 G-GAGAAGGCAGCT-GAAAATGAAGAGGATGGCAAAACGAAAACACCGCTAAAGGAGAGC 96
consensus_3967#0 CAGAGACTCCTGCTCGACGGTAACGAGGGTGGCAAGGAATCATCGGCCAACAAGTCCACC 180
**** * *** ** * * **** ****** * * * *** * *
consensus_3967#1 GGCAA---ACCTGTGCCGATCGAACCGCGCACGCCGACACCGTTCAAGAACGCAATGGCC 211
consensus_3967#2 GGCAA---ACCTGTGCCGATCGAACCGCGCACGCCGACACCGTTCAAGAACGCAATGGCC 153
consensus_3967#0 GTCAAGTCACCGGTGCCCGTCGACCCG---AAATGGGAAAAGTTTGCGTGTGGCAATGAC 237
* *** *** ***** **** *** * * * *** * * * * *
consensus_3967#1 GAGCTGGGAAAGAGACGTTCCG----AGATCTACATCCCACCGAGTCCGGCACGTATCGG 267
consensus_3967#2 GAGCTGGGAAAGAGACGTTCCG----AGATCTACATCCCACCGAGTCCGGCACGTATCGG 209
consensus_3967#0 GCGCGATCATATGATCGTTTCGCAGCAAGCACACGAGCTGCCTGAATAAAGACATCGCTC 297
* ** * * **** ** * ** * ** ** * *
consensus_3967#1 CGAGGAC-ATTGCNGAGATCATG-AACCAAGAGCAGGCAAGC-GAAACTTCC-TCCACGC 323
consensus_3967#2 CGAGGAC-ATTGCGGAGATCATG-AACCAAGAGCAGGCAAGCTGAAACTTCC-TCCACGC 266
consensus_3967#0 CAGCCACGATCGTTGAATTTCTACAAGTAGAAGACGATTGACACACACGCACACCCGTGC 357
* ** ** * ** * * ** * ** * * * ** * ** **
consensus_3967#1 -TGGCAAGTGGCAGCGACACA-TCGGCCGGCAACAAAACGGTC-ATCAGCAACAA-TGGC 379
consensus_3967#2 -TGGCAAGTGGCAGCGACACA-TCGGCCGGCAACAAAACGGTC-ATCAGCAACAA-TGGC 322
consensus_3967#0 GTGGTGGTTGCTGATGTCCCACTTTATTGTGCAAAATGCAATCGATTTGAAATGGGTAGA 417
*** ** * * ** * * * ** * ** ** * ** * *
consensus_3967#1 AGTGGCACGC---AAACGACAGATTCGAAGG-AAAACACACTTCCCTCACGAAGCGGACA 435
consensus_3967#2 AGTGGCACGC---AAACGACAGATTCGAAGG-AAAACACACTTCCCTCACGAAGCGGACA 378
consensus_3967#0 ATCGTTGCTCTTTAAACCTTAAGTTAAGTGTTAGGACAGCGGTACAGCAGCGTGTGCACC 477
* * * * **** * ** * * *** * * ** * * **
consensus_3967#1 GGTGTCGCCGCGCATGAACAAGAAGGCGTCCTCTTCCTCCGTC------TTTTCGCAGCA 489
consensus_3967#2 GGTGTCGCCGCGCATGAACAAGAAGGCGTCCTCTTCCTCCGTC------TTTTCGCAGCA 432
consensus_3967#0 GTGCGCGTGGTTAATGT-TAAGCAAACGATTCTTCCCCCCGTCAGAAGTCGTATTCTTCT 536
* ** * *** *** * ** * ** ***** * * *
consensus_3967#1 GTGGGAAAATTCGGACATGAGCTTCTTTGCGGAAACGCCGAGCAAGTCGCTTATCTCGGA 549
consensus_3967#2 GTGGGAAAATTCGGACATGAGCTTCTTTGCGGAAACGCCGAGCAAGTCGCTTATCTCGGA 492
consensus_3967#0 GGTGGTTAGTTTAGACG-GNGGGAATTGGGGAAAACGGGGTACGCGTTGCTCTCTT--AC 593
* ** * ** *** * * ** * * ***** * * ** *** *
consensus_3967#1 CTCGGGTGTG-ACGCTGTCGCCCTCGTTGCGCGATCCGCTGCGTGAAGCAGAGCTCCTGC 608
consensus_3967#2 CTCGGGTGTG-ACGCTGTCGCCCTCGTTGCGCGAT------------------------- 526
consensus_3967#0 CTAAAGTCCGCAAGAGGACGAGTTTATGGTAGAGGGCATCTAAAGTAGGAAGTAAGCGTC 653
** ** * * * * ** * * *
consensus_3967#1 TCGACGGTAACGAAGGT 625
consensus_3967#2 -----------------
consensus_3967#0 TTGAAACTAACCAA--- 667
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||