These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3986#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 802 fasta sequence [CCGAACGCAATGAGCCAAACACAGCTCACATACAAACACAACACTCACATACAAGGTCAGGTACGGCCAGAACCCCCAGGAGCGAGCGATATACGGTGAAAATGGGTTGCTTGTTTACTCTCTAGCAGCAAAATAGCCAAATGTCCTGTTTGAGTTCCTTTTTCCTCTGTGAGTTATCAAGCAATCGAAAGAGCGAGAGCGAGAAAGGAAGACATTCTACTCTTGTTGTTTC--TTTTTTTTGGAATGGGATTGAAAATATTACATTTTTTTTAAACAATTGTTTTCAATTGTTCTACGCCGATTGTTGTTTGCTCCAACAATTCACCAACAATGGAAGTAGCGGAGTATCGAAATATGTTCCCGACTTCTTCCCCTATGCCCGATGCCCCTATTTATACGCATGCAGTGCACGAGAGTTTGTCAGTTAAAGTTTTGATTGACTGAAACCTTCAAACCGATTCCATTTAAAGCTGTGATACGAAAACTCTTCTTTGTAAGCCTCCTCCCTCCTCCACCCCAGCCAAATTGCATCCGCCGCTCGTATAAGCAGGCGGATGCTTCCAGCTCACAGGTGTTCCGTTTCCCCGTGGATGACTGGGGGGGGAGACTCATCATCAATCCTGCCCACCGGTTCCACTCACAGGACCAGTGTTTTGCTCTGGTTCAACGTTGTTTTCATCATTGTTTTTTTTTATGATTTGCTTTATTTTGTTTTTTACTCTCTGGGGTAACTTTTTTCTCTCCAAAAGTATCCCTTTCATCTCACCTGGCTTATGCTTTTGCACCCTTTTTATACTTTTGT] [+] EMBL BM654502 [CCGAACGCAATGAGCCAAACACAGCTCACATACAAACACAACACTCACATACAAGGTCAGGTACGGCCAGAACCCCCAGGAGCGAGCGATATACGGTGAAAATGGGTTGCTTGTTTACTCTCTAGCAGCAAAATAGCCAAATGTCCTGTTTGAGTTCCTTTTTCCTCTGTGAGTTATCAAGCAATCGAAAGAGCGAGAGCGAGAAAGGAAGACATTCTACTCTTGTTGTTTC TTTTTTTTGGAATGGGATTGAAAATATTACATTTTTTTTAAACAATTGTTTTCAATTGTTCTACGCCGATTGTTGTTTGCTCCAACAATTCACCAACAATGGAAGTAGCGGAGTATCGAAATATGTTCCCGACTTCTTCCCCTATGCCCGATGCCCCTATTTATACGCATGCAGTGCACGAGAGTTTGTCAGTTAAAGTTTTGATTGACTGAAACCTTCAAACCGATTCCATTTAAAGCTGTGATACGAAA ] [+] EMBL BM618000 [ CCGGGAGCGAGCGATATACGGTGAAAATGGGTAGCTTGTTTACTCTCTAGCAGCAAAATAGCCAAATGTCCTGTTTGAGTTCCTTTTTCCTCTGTGAGTTATCAAGCAATCGAAAGAGCGAGAGCGAGAAAGGAAGACATTCTACTCTTGTTGTTTCGTTTTTTTTTGGAATGGGATTGAAAATATTACATTTTTTTTAAACAATTGTTTTCAATTGTTCTACGCCGATTGTTGTTTGCTCCAACAATTCACCAACAATGGAAGTAGCGGAGTATCGAAATATGCTCCCGACTTCTTCCCCTATGCCCGATGCCCCTATTTATACGCATGCAGTGCACGAGAGTTTGTCAGTTAAAGTTTTGATTGACTGAGACCTTCAAA CGATTCCATTTAAAGCTGTGATACGAAAACTCTTCTTTGTAAGCCTCCTCCCTCCTCCACCCCAGCCAAATTGCATCCGCCGCTCGTATAAGCAGGCGGATGCTTCCAGCTCACAGGTGTTCCGTTTCCCCGTGGATGACTGGGGGGGGAGACTCATCATCAATCCTGCCCACCGGTTCCACTCACAGGACCAGTGTTTTGCTCTGGTTCAACGTTGTTTTCATCATTGTTTTTTTTTATGATTTGCTTTATTTTGTTTTTTACTCTCTGGGGTAACTTTTTTCTCTCCAAAAGTATCCCTTTCATCTCACCTGGCTTATGCTTTTGCACCCTTTTTATACTTTTGT] consensusID : consensus_3986#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 536 fasta sequence [GCTCAGCAGAATCGCCCCGAGGTTTCAGATGGGAATCGGAGGCATCGCATGAGGATGTGTTTGCTGCTTCGGTTTTTGGAAAACCGGAAAGGGCTAACTAATGTAAGGGCAAACTGTGTTTAGATATAAATTATACACATAAACACATCCCCACACACAAACACACACACACACACACACATACAAAAGCACCCACTGCAGAGTTGGCATTTGATACCCGAATTAATCAAGCATACATTACGAACAAAAGCAAATAACATCATGATTATTCATATGTACAGTAAAAACCACGCAAACGCAATGAGCCAAACACAGCTCACATACCAAACACAAACTCACATACAAGGTCAGGTACGGGCCAGATCCCCCAGGAGCTGAGCGATACGGTGAACAATGGGTTGCTTGCCTTTACTCTCTAGCAGGCAAAATAGGCCAAATGTCCTGTATCGCACGTTACCATATTAGATCCTCTGTGACGTTCATCAACGCAATTCGAAAGAGCGGAAGAGGCGAGACAACTGGGAAAGACATTTCTA] [+] EMBL AL697213 [GCTCAGCAGAATCGCCCCGAGGTTTCAGATGGGAATCGGAGGCATCGCATGAGGATGTGTTTGCTGCTTCGGTTTTTGGAAAACCGGAAAGGGCTAACTAATGTAAGGGCAAACTGTGTTTAGATATAAATTATACACATAAACACATCCCCACACACAAACACACACACACACACACACATACAAAAGCACCCACTGCAGAGTTGGCATTTGATACCCGAATTAATCAAGCATACATTACGAACAAAAGCAAATAACATCATGATTATTCATATGTACAGTAAAAACCACGCAAACGCAATGAGCCAAACACAGCTCACATACCAAACACAAACTCACATACAAGGTCAGGTACGGGCCAGATCCCCCAGGAGCTGAGCGATACGGTGAACAATGGGTTGCTTGCCTTTACTCTCTAGCAGGCAAAATAGGCCAAATGTCCTGTATCGCACGTTACCATATTAGATCCTCTGTGACGTTCATCAACGCAATTCGAAAGAGCGGAAGAGGCGAGACAACTGGGAAAGACATTTCTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_3986#0 CCGAACGCAATGAGCCAAACACAGCTCACATACAAACACAACACTCACATACAAGGTCAG 60 consensus_3986#1 ------------------------------------------------------------ consensus_3986#0 GTACGGCCAGAACCCCCAGGAGCGAGCGATATACGGTGAAAATGGGTTGCTTGTTTACTC 120 consensus_3986#1 ------------------------------------------------------------ consensus_3986#0 TCTAGCAGCAAAATAGCCAAATGTCCTGTTTGAGTTCCTTTTTCCTCTGTGAGTTATCAA 180 consensus_3986#1 ------------------------------------------------------------ consensus_3986#0 GCAATCGAAAGAGCGAGAGCGAGAAAGGAAGACATTCTACTCTTGTTGTTTCTTTTTTTT 240 consensus_3986#1 ----------------------------------GCTCAGCAGAATCGCCCCGAGGTTTC 26 * * * * *** consensus_3986#0 GGAATGGGATTGAAAATATTACATTTTTTTTAAACAATTGTTTTCAATTGTTCTACGCCG 300 consensus_3986#1 AGATGGGAATCGGAGGCATCGCATGAGGATGTGTTTGCTGCTTCGGTTTTTGGAAAACCG 86 ** ** ** * * ** *** * ** ** ** * * *** consensus_3986#0 ---ATTGTTGTTTGCTCCAACAATTCACCAACAATGGAAGTAGCGGA-GTATCGAAATAT 356 consensus_3986#1 GAAAGGGCTAACTAATGTAAGGGCAAACTGTGTTTAGATATAAATTATACACATAAACAC 146 * * * * * ** ** * ** ** * * *** * consensus_3986#0 GTTCCCG-ACTTCTTCCCCTATGCCCGATGCCCCTATTTATACGCATGCAGTGCACGAGA 415 consensus_3986#1 ATCCCCACACACAAACACACACACAC-ACACACACATACAAAAGCACCCACTGCA---GA 202 * *** ** * * * * * * * * ** * * *** ** **** ** consensus_3986#0 GTTTGTCAGTTAAAGTTTTGATTGACTGAAACCTTCAAACCGATTCCATTTAAAGCTGTG 475 consensus_3986#1 GTT-GGCATTTGATACCCGAATTAA-TCAAGCATACATTACGAACAAAAGCAAA-TAACA 259 *** * ** ** * *** * * ** * * ** *** * *** consensus_3986#0 ATACGAAAACTCTTCTTTGTAAGCCTCCTCCCTCCTCCACCCCAGCCAAATTGCATCCGC 535 consensus_3986#1 TCATGATTATTCATATGTACAGTAAAAACCACGCAAACGCAATGAGCCAAACACAGCTCA 319 * ** * ** * * * * * * * * * * ** ** * consensus_3986#0 CGCTCGTATAAGCAGGCGGATGCTTCCAGCTCACAGGTGTTCCGTTTCCCCGTGGATGAC 595 consensus_3986#1 CATAC-CAAACACAAACTCACA-TACAAGGTCAGGTACGGGCCAGATCCCCCAGGA--GC 375 * * * * ** * * * * ** *** * ** ***** *** * consensus_3986#0 TGGGGGGGGAGACTCATCATCAAT--CCTGCCCACCGGTTCCA-CTCACAGGACCAGTGT 652 consensus_3986#1 TGAGCGATACGGTGAACAATGGGTTGCTTGCCTTTACTCTCTAGCAGGCAAAATAGGCCA 435 ** * * * * ** * * **** ** * * ** * * consensus_3986#0 TTTGCTCTGGTTCAACGTTGTTTTCATCATTGTTTTTTTTTATGATTTGCTTTATTTTGT 712 consensus_3986#1 AATGTCCTGTATCGC--ACGTTACCATATTAGATCCTCT--GTGACGTTCATCAACGCAA 491 ** *** ** *** *** * * * * * *** * * * * consensus_3986#0 TTTTTACTCTCTGGGGTAACTTTTTTCTCTCCAAAAGTATCCCTTTCATCTCACCTGGCT 772 consensus_3986#1 TTCGAAAGAGCGGAAGAGGCGAGACAACTGGGAAAGACATTTCTA--------------- 536 ** * * * * * *** ** ** consensus_3986#0 TATGCTTTTGCACCCTTTTTATACTTTTGT 802 consensus_3986#1 ------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||