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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_3990#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1287 fasta sequence
[CCGTTTCTAACGACGACGGCCGGGTTCGAGGTGTGGCTGGGCGTGAACAGCCACGAAAAGTTCCGCTTCAGCCACAAGATCAACTTCCCCGAGGGCAACTACAACAAGCACGTGGGGCGGGCCATCTTCCTGGACGTGGAGCTGGACGGCAGCCTGCTGCCCGTGTTTCCGATGTGCTTCGACGCAAAGTGCGTCAACTCGAGCATCTTCGTGCACCACGGCAACCATCTGCACGATCTGCAGATCGACTTCAAGGACGACCACAACGACGCGTGGCACTTTGTCGTGCCGGACCGGTCGAGCTGGGCGACGCAGAGCATAACGCTGCGCGGCGGCGACTTCAACCTGGACGGCTATCCGGACCTGCTCGCCACGCTGACGAAATCGGGCGACCAGATGCAAACCTTCCTGCTGGAGAACGTGCCGTGCGAGAAGAGCGCCTGCAACCACATGACGCGCACGTTCGTGGTGCGCTGGAAGGCGCTGGCCCCGTTCTCGAACGGTACGATGATGGGTTCGTTTTTCGACTTCTACAACGACGGCATACTGGACGCGATCTTTGTCGAGCGGCACGGCAACGGGACGCGGCCGGTCGCGTTCCGCAACTCGCTCGACTACGATGCCAACTTCGTGAAGGTGATCGTGCTGACCGGGCTGAGCAATAGCAGTGGACCGAAGATTTTAACGCCACTCGGGCGCAAGAAGCGCACGTTCGGGACGAACCTGCCCGGGCCACGGATTGAGTACAACACGACGACGCAGGACGGGGAACCGCAGCACGGTGCGTCGGCCCAGCTGCCCCAGTCCGCCTACCTGTCGCTGCATCTGCCGTTCACGACGTTCGGGCTGGGCCGGACGCCCAACTTTGTCGACTCGCTGACGGTGGGGCTGTGGAACCATTCGCGCACCTGGACGCAGCTCATACCGAACTCGCAGATGATCGTGGTGCCGAACCCGATCGACGAGCCGGAGCGCTGGAAGGCGCAGCTGTTCGTGACGCCGAGCAAGCTGATCGTGATGAGCGTGATCGCGCTCGGCGTGATCTGTCTCGTGATACTGCTGCTGATACTCATCCTGTACGCGAAGGAAAAGCGCGAAGATCGGATACAGCGCTCGCTCGAGGCGCACCGGTTCCATTTCGATGCGATGTAGAGGATAGCGGAAGGCAAGGGGTTTGGGTTTGGGAGGCCAGTGGGTCAGTTTGCGAGCTGAAACGAGGCGGGACACATGGCAGACCATTTGTTTTAATGCTGCGATACATACATACATAACGTAGACTGTAATCTA]
[+] EMBL BM575928 [CCGTTTCTAACGACGACGGCCGGGTTCGAGGTGTGGCTGGGCGTGAACAGCCACGAAAAGTTCCGCTTCAGCCACAAGATCAACTTCCCCGAGGGCAACTACAACAAGCACGTGGGGCGGGCCATCTTCCTGGACGTGGAGCTGGACGGCAGCCTGCTGCCCGTGTTTCCGATGTGCTTCGACGCAAAGTGCGTCAACTCGAGCATCTTCGTGCACCACGGCAACCATCTGCACGATCTGCAGATCGACTTCAAGGACGACCACAACGACGCGTGGCACTTTGTCGTGCCGGACCGGTCGAGCTGGGCGACGCAGAGCATAACGCTGCGCGGCGGCGACTTCAACCTGGACGGCTATCCGGACCTGCTCGCCACGCTGACGAAATCGGGCGACCAGATGCAAACCTTCCTGCTGGAGAACGTGCCGTGCGAGAAGAGCGCCTGCAACCACATGACGCGCACGTTCGTGGTGCGCTGGAAGGCGCTGGCCCCGTTCTCGAACGGTACGATGATGGGTTCGTTTTTCGACTTCTACAACGACGGCATACTGGACGCGATCTTTGTCGAGCGGCACGGCAACGGGACGCGGCCGGTCGCGTTCCGCAACTCGCTCGACTAC ]
[+] EMBL BX617062 [ ACGCGATCTTTGTCGAGCGGCACGGCAACGGGACGCGGCCGGTCGCGTTCCGCAACTCGCTCGACTACGATGCCAACTTCGTGAAGGTGATCGTGCTGACCGGGCTGAGCAATAGCAGTGGACCGAAGATTTTAACGCCACTCGGGCGCAAGAAGCGCACGTTCGGGACGAACCTGCCCGGGCCACGGATTGAGTACAACACGACGACGCAGGACGGGGAACCGCAGCACGGTGCGTCGGCCCAGCTGCCCCAGTCCGCCTACCTGTCGCTGCATCTGCCGTTCACGACGTTCGGGCTGGGCCGGACGCCCAACTTTGTCGACTCGCTGACGGTGGGGCTGTGGAACCATTCGCGCACCTGGACGCAGCTCATACCGAACTCGCAGATGATCGTGGTGCCGAACCCGATCGACGAGCCGGAGCGCTGGAAGGCGCAGCTGTTCGTGACGCCGAGCAAGCTGATCGTGATGAGCGTGATCGCGCTCGGCGTGATCTGTCTCGTGATACTGCTGCTGATACTCATCCTGTACGCGAAGGAAAAGCGCGAAGATCGGATACAGCGCTCGCTCGAGGCGCACCGGTTCCATTTCGATGCGATGTAGAGGATAGCGGAAGGCAAGGGGTTTGGGTTTGGGAGGCCAGTGGGTCAGTTTGCGAGCTGAAACGAGGCGGGACACATGGCAGACCATTTGTTTTAATGCTGCGATACATACATACATAACGTAGACTGTAATCTA]
consensusID : consensus_3990#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 866 fasta sequence
[CAGCTNTGTTTTGGATCTTCAAAAAGCGGACGACATGTGCAGCGGGGACAATTTACGGTGCCGATGGATGGTACGCACGGGGCGGAACTGTCCGTCCCGCATTCGCACGCGGTGCTCGACCTGAACAAAGACTTTACCGCGGACCTGTTTCTAACGACGACGGCCGGGTTCGAGGTGTGGCTGGGCGTGAACAGCACGAAAAGTTCCGCTTCAGCCACAAGATCAACTTCCCCGAGGGCAACTACAACAAGCACGTGGGGCGGGCCATCTTCCTGGACGTGGAGCTGGACGGCAGCCTGCTTGCCCGTGTTTCCGATGTGCTTCGACCGCAAAAGTGCGTCAACTCGAGCATCTTCGTGCACCACTGGAACCATTCTTGCACGATCTGCAGATTCGACTTCAAGGACCGACCACAAGAACGCGTGGCCACTTTTGTCGGTGCCGGGACCCGGTCGAGCTTGGGCGACGCCAGAGCCATTAACGGCTTGCGCGGCGNGCGACTTCAAACTTGGACCGGGTATTCCGGACCTGGCGTCGCCCAACGCCTGACGAAAATTCGGGGCGACCAAGAATTGGCAAACCCTTTCCTTGCTGGGCAGCAACGTTGGCCGTGCCGACGAAAGAAGGCGCCTTGGCGAACCACATTGGACTCGCGGCACGTATCGGTGGGTTGCGCTTGGAAAGTGCTGCTTGGGCCCCGTTTACTCCGGAAACCACGGGTAACGAATTGGATTGGGGGTTCCGGGTAATATTATCCGAAACTTCTTACCAACTGACGGGCATTAACTGGGCAACGCCTGAATCCTATTTGGTACAGACGGCGGGGCAAACNGTGGCCAAACGGGGAACTGCCGAGGCCCGGNGAT]
[+] EMBL AL697296 [CAGCTNTGTTTTGGATCTTCAAAAAGCGGACGACATGTGCAGCGGGGACAATTTACGGTGCCGATGGATGGTACGCACGGGGCGGAACTGTCCGTCCCGCATTCGCACGCGGTGCTCGACCTGAACAAAGACTTTACCGCGGACCTGTTTCTAACGACGACGGCCGGGTTCGAGGTGTGGCTGGGCGTGAACAGCACGAAAAGTTCCGCTTCAGCCACAAGATCAACTTCCCCGAGGGCAACTACAACAAGCACGTGGGGCGGGCCATCTTCCTGGACGTGGAGCTGGACGGCAGCCTGCTTGCCCGTGTTTCCGATGTGCTTCGACCGCAAAAGTGCGTCAACTCGAGCATCTTCGTGCACCACTGGAACCATTCTTGCACGATCTGCAGATTCGACTTCAAGGACCGACCACAAGAACGCGTGGCCACTTTTGTCGGTGCCGGGACCCGGTCGAGCTTGGGCGACGCCAGAGCCATTAACGGCTTGCGCGGCGNGCGACTTCAAACTTGGACCGGGTATTCCGGACCTGGCGTCGCCCAACGCCTGACGAAAATTCGGGGCGACCAAGAATTGGCAAACCCTTTCCTTGCTGGGCAGCAACGTTGGCCGTGCCGACGAAAGAAGGCGCCTTGGCGAACCACATTGGACTCGCGGCACGTATCGGTGGGTTGCGCTTGGAAAGTGCTGCTTGGGCCCCGTTTACTCCGGAAACCACGGGTAACGAATTGGATTGGGGGTTCCGGGTAATATTATCCGAAACTTCTTACCAACTGACGGGCATTAACTGGGCAACGCCTGAATCCTATTTGGTACAGACGGCGGGGCAAACNGTGGCCAAACGGGGAACTGCCGAGGCCCGGNGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_3990#0 ------------------------------------------------------------
consensus_3990#1 CAGCTNTGTTTTGGATCTTCAAAAAGCGGACGACATGTGCAGCGGGGACAATTTACGGTG 60
consensus_3990#0 ------------------------------------------------------------
consensus_3990#1 CCGATGGATGGTACGCACGGGGCGGAACTGTCCGTCCCGCATTCGCACGCGGTGCTCGAC 120
consensus_3990#0 ------------------------CCGTTTCTAACGACGACGGCCGGGTTCGAGGTGTGG 36
consensus_3990#1 CTGAACAAAGACTTTACCGCGGACCTGTTTCTAACGACGACGGCCGGGTTCGAGGTGTGG 180
* **********************************
consensus_3990#0 CTGGGCGTGAACAGCCACGAAAAGTTCCGCTTCAGCCACAAGATCAACTTCCCCGAGGGC 96
consensus_3990#1 CTGGGCGTGAACAGC-ACGAAAAGTTCCGCTTCAGCCACAAGATCAACTTCCCCGAGGGC 239
*************** ********************************************
consensus_3990#0 AACTACAACAAGCACGTGGGGCGGGCCATCTTCCTGGACGTGGAGCTGGACGGCAGCCTG 156
consensus_3990#1 AACTACAACAAGCACGTGGGGCGGGCCATCTTCCTGGACGTGGAGCTGGACGGCAGCCTG 299
************************************************************
consensus_3990#0 CT-GCCCGTGTTTCCGATGTGCTTCGAC-GCAAA-GTGCGTCAACTCGAGCATCTTCGTG 213
consensus_3990#1 CTTGCCCGTGTTTCCGATGTGCTTCGACCGCAAAAGTGCGTCAACTCGAGCATCTTCGTG 359
** ************************* ***** *************************
consensus_3990#0 CACCACGGCAACCATC--TGCACGATCTGCAGAT-CGACTTCAAGGAC-GACCACAACGA 269
consensus_3990#1 CACCACTGGAACCATTCTTGCACGATCTGCAGATTCGACTTCAAGGACCGACCACAAGAA 419
****** * ****** **************** ************* ******** *
consensus_3990#0 CGCGTGGCA--CTTTGTCG-TGCCGGA--CCGGTCGAGCT-GGGCGACGC-AGAGCA--T 320
consensus_3990#1 CGCGTGGCCACTTTTGTCGGTGCCGGGACCCGGTCGAGCTTGGGCGACGCCAGAGCCATT 479
******** ******* ****** *********** ********* ***** *
consensus_3990#0 AACG--CTGCGCGGCGG-CGACTTCAA-CCTGGAC--GGCTATCCGGACCTGC--TCGCC 372
consensus_3990#1 AACGGCTTGCGCGGCGNGCGACTTCAAACTTGGACCGGGTATTCCGGACCTGGCGTCGCC 539
**** ********* ********* * ***** ** ********** *****
consensus_3990#0 --ACGC-TGACGAAATC---GGGCGACCAGAT----GCAAACCTT---CCTGCTGGAGAA 419
consensus_3990#1 CAACGCCTGACGAAAATTCGGGGCGACCAAGAATTGGCAAACCCTTTCCTTGCTGGGCAG 599
**** ******** ********* ******* * * ****** *
consensus_3990#0 CG-TGCCGTGCGAGAAGAGCGCCTGCAACCACATGACGCGC-ACGTTCGTGGTGCGCTGG 477
consensus_3990#1 CAACGTTGGCCGTGCCGACGAAAGAAGGCGCCTTGGCGAACCACATTGGACTCGCGGCAC 659
* * * ** * ** * * ** ** * ** ** * ***
consensus_3990#0 AAGGCGCTGGCCCCGTTCTCGAACGGTACGATGATGGGTTCGTTTTTCGACTTCTACAAC 537
consensus_3990#1 GTATCGGTGGGTT-GCGCTTGGAAAGTGCTGCTTGGGCCCCGTTT----ACTCCGGAAAC 714
** *** * ** * * ** * ** ***** *** * ***
consensus_3990#0 GACGGCATACTGGACGCGATCTTTGTCGAGCGGCACGGCAACGGGACGCGGCCGGTCGCG 597
consensus_3990#1 CACGG-GTAACGAATTGGATTGGGGGTTCCGGGTAATATTATCCGAAACTTCTTACCAAC 773
**** ** * * *** * ** * * ** * * *
consensus_3990#0 TTCCGCA-ACTCGCTCGACTACG----ATGCCAACTTCGTGAAGGTGATCGTGCTGACCG 652
consensus_3990#1 TGACGGGCATTAACTGGGCAACGCCTGAATCCTATTTGGTACAGACGGCGGGGCAAACNG 833
* ** * * ** * * *** * ** * ** ** ** * * ** ** *
consensus_3990#0 -GGCTGAGC----AATAGCAGTGGACCGAAGATTTTAACGCCACTCGGGCGCAAGAAGCG 707
consensus_3990#1 TGGCCAAACGGGGAACTGCCGAGGCCCGGNGAT--------------------------- 866
*** * * ** ** * ** *** ***
consensus_3990#0 CACGTTCGGGACGAACCTGCCCGGGCCACGGATTGAGTACAACACGACGACGCAGGACGG 767
consensus_3990#1 ------------------------------------------------------------
consensus_3990#0 GGAACCGCAGCACGGTGCGTCGGCCCAGCTGCCCCAGTCCGCCTACCTGTCGCTGCATCT 827
consensus_3990#1 ------------------------------------------------------------
consensus_3990#0 GCCGTTCACGACGTTCGGGCTGGGCCGGACGCCCAACTTTGTCGACTCGCTGACGGTGGG 887
consensus_3990#1 ------------------------------------------------------------
consensus_3990#0 GCTGTGGAACCATTCGCGCACCTGGACGCAGCTCATACCGAACTCGCAGATGATCGTGGT 947
consensus_3990#1 ------------------------------------------------------------
consensus_3990#0 GCCGAACCCGATCGACGAGCCGGAGCGCTGGAAGGCGCAGCTGTTCGTGACGCCGAGCAA 1007
consensus_3990#1 ------------------------------------------------------------
consensus_3990#0 GCTGATCGTGATGAGCGTGATCGCGCTCGGCGTGATCTGTCTCGTGATACTGCTGCTGAT 1067
consensus_3990#1 ------------------------------------------------------------
consensus_3990#0 ACTCATCCTGTACGCGAAGGAAAAGCGCGAAGATCGGATACAGCGCTCGCTCGAGGCGCA 1127
consensus_3990#1 ------------------------------------------------------------
consensus_3990#0 CCGGTTCCATTTCGATGCGATGTAGAGGATAGCGGAAGGCAAGGGGTTTGGGTTTGGGAG 1187
consensus_3990#1 ------------------------------------------------------------
consensus_3990#0 GCCAGTGGGTCAGTTTGCGAGCTGAAACGAGGCGGGACACATGGCAGACCATTTGTTTTA 1247
consensus_3990#1 ------------------------------------------------------------
consensus_3990#0 ATGCTGCGATACATACATACATAACGTAGACTGTAATCTA 1287
consensus_3990#1 ----------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||