cluster # 4001

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Anopheles gambiae
cluster # 4001 cluster # 4001 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4001#0 length = 666 sequences # 1

consensus_4001#1 length = 653 sequences # 1
consensus_4001#2 length = 483 sequences # 1

consensusID : consensus_4001#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 666
fasta sequence

                              [CCGCGTCGCGGTGCAATCAACAACAACGCTCGGTTTCCAAATGATTGTGTTTAAATTAAGTGTAATAAGTTAAGCAGAAAACACACGTTGTTCCAAATTGTGCTCCAATGTTTTGGAAATGGCTGGAGGACAACTTCAAGTACCGGCGAAAGTGCGCGATCGTGTTTGGCCGGAGGCGCCGTAACTCGGTGCTGGAAGTGAGCGGAAGTCAGAAGATCACCCAGCAGCAGTACCGTGCCCTGCTGGGCTGCATCGATTATCTGGAGCAACACATTGGCGTTTACGGGCTGTTTGTGACCGGCGGTAGCGTAACGCACGTGAAAAGAATATTCGACAAGCTGAAAGCTGGCTGTCCACTGCTGCTGGATTACCTGCGCTCGGCCCATGCACCGCGGGAATGTGCGATGGCTTTCCATCAGTTCCTTTCCCTGTATCAGGTGCAAGTGCTTCCTCAGCGTTGTGTCGATGTCGTGCTGGGGGATGTGGCCGGTGTCCCGAAGCGGCTGATCGCACTCGACGTGCTGAACCTGCTGCACGAAGAGTACGACGATACGCGCCTTCACTTTGCCAAGCGCTATCTGCAGCTGATGCGCCGCTACACCCTGTACGGCTATCTGCGGCCGACGGAAGTGCACGCCGTCATCACACCGTACCTGGTGGTGCCGA]

[+] EMBL BM622234             [CCGCGTCGCGGTGCAATCAACAACAACGCTCGGTTTCCAAATGATTGTGTTTAAATTAAGTGTAATAAGTTAAGCAGAAAACACACGTTGTTCCAAATTGTGCTCCAATGTTTTGGAAATGGCTGGAGGACAACTTCAAGTACCGGCGAAAGTGCGCGATCGTGTTTGGCCGGAGGCGCCGTAACTCGGTGCTGGAAGTGAGCGGAAGTCAGAAGATCACCCAGCAGCAGTACCGTGCCCTGCTGGGCTGCATCGATTATCTGGAGCAACACATTGGCGTTTACGGGCTGTTTGTGACCGGCGGTAGCGTAACGCACGTGAAAAGAATATTCGACAAGCTGAAAGCTGGCTGTCCACTGCTGCTGGATTACCTGCGCTCGGCCCATGCACCGCGGGAATGTGCGATGGCTTTCCATCAGTTCCTTTCCCTGTATCAGGTGCAAGTGCTTCCTCAGCGTTGTGTCGATGTCGTGCTGGGGGATGTGGCCGGTGTCCCGAAGCGGCTGATCGCACTCGACGTGCTGAACCTGCTGCACGAAGAGTACGACGATACGCGCCTTCACTTTGCCAAGCGCTATCTGCAGCTGATGCGCCGCTACACCCTGTACGGCTATCTGCGGCCGACGGAAGTGCACGCCGTCATCACACCGTACCTGGTGGTGCCGA]




>consensus_4001#0
CCGCGTCGCGGTGCAATCAACAACAACGCTCGGTTTCCAAATGATTGTGTTTAAATTAAG
TGTAATAAGTTAAGCAGAAAACACACGTTGTTCCAAATTGTGCTCCAATGTTTTGGAAAT
GGCTGGAGGACAACTTCAAGTACCGGCGAAAGTGCGCGATCGTGTTTGGCCGGAGGCGCC
GTAACTCGGTGCTGGAAGTGAGCGGAAGTCAGAAGATCACCCAGCAGCAGTACCGTGCCC
TGCTGGGCTGCATCGATTATCTGGAGCAACACATTGGCGTTTACGGGCTGTTTGTGACCG
GCGGTAGCGTAACGCACGTGAAAAGAATATTCGACAAGCTGAAAGCTGGCTGTCCACTGC
TGCTGGATTACCTGCGCTCGGCCCATGCACCGCGGGAATGTGCGATGGCTTTCCATCAGT
TCCTTTCCCTGTATCAGGTGCAAGTGCTTCCTCAGCGTTGTGTCGATGTCGTGCTGGGGG
ATGTGGCCGGTGTCCCGAAGCGGCTGATCGCACTCGACGTGCTGAACCTGCTGCACGAAG
AGTACGACGATACGCGCCTTCACTTTGCCAAGCGCTATCTGCAGCTGATGCGCCGCTACA
CCCTGTACGGCTATCTGCGGCCGACGGAAGTGCACGCCGTCATCACACCGTACCTGGTGG
TGCCGA

consensusID : consensus_4001#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 653
fasta sequence

                              [CCGGCGCATCGACGCACAATGCACCGCGGATTAAGTTACAGCATCAATGCCGCGCACTACCACCCACAGCACATCCGCGACAGAACGGCTTGCTGAGGTGTTCCTTTTTGCGGTGTTGTGTTGTGTTGCAAAAGGGAAAAAAGCGCGATCGTGTTTGGCCGGAGGCGCCGTAACTCGGTGCTGGAAGTGAGCGGAAGTCAGAAGATCACCCAGCAGCAGTACCGTGCCCTGCTGGCCTGCATCGATTATCTGGAGCAACACATTGGCGTTTACGGGCTGTTTGTGACCGGCGGTAGCGTAACGCACGTGAAAAGAATATTCGACAAGCTGAAAGCTGGCTGTCCACTGTTGCTGGATTACCTGCGCTCGGCCCATGCACCGCGGGAATGTGCGATGGCTTTCCATCAGTTCCTTTCCCTGTATCAGGTGCAAGTGCTTCCTCAGCGTTGTGTCGATGTCGTGCTGGGGGATGTGGCCGGCGTACCGAAGCGGCTGATCGCACTCGATGTGCTGAACCTGCTGCACGAAGAGTACGACGATACGCGCCTTCACTTTGCCAAGCGCTATCTGCAGCTGATGCGCCGCTACACCCTGTACGGCTATCTGCGGCCGACGGAAGTGCACGCCGTCATCACACCGGTACCTGGTGGTGC]

[+] EMBL BM607264             [CCGGCGCATCGACGCACAATGCACCGCGGATTAAGTTACAGCATCAATGCCGCGCACTACCACCCACAGCACATCCGCGACAGAACGGCTTGCTGAGGTGTTCCTTTTTGCGGTGTTGTGTTGTGTTGCAAAAGGGAAAAAAGCGCGATCGTGTTTGGCCGGAGGCGCCGTAACTCGGTGCTGGAAGTGAGCGGAAGTCAGAAGATCACCCAGCAGCAGTACCGTGCCCTGCTGGCCTGCATCGATTATCTGGAGCAACACATTGGCGTTTACGGGCTGTTTGTGACCGGCGGTAGCGTAACGCACGTGAAAAGAATATTCGACAAGCTGAAAGCTGGCTGTCCACTGTTGCTGGATTACCTGCGCTCGGCCCATGCACCGCGGGAATGTGCGATGGCTTTCCATCAGTTCCTTTCCCTGTATCAGGTGCAAGTGCTTCCTCAGCGTTGTGTCGATGTCGTGCTGGGGGATGTGGCCGGCGTACCGAAGCGGCTGATCGCACTCGATGTGCTGAACCTGCTGCACGAAGAGTACGACGATACGCGCCTTCACTTTGCCAAGCGCTATCTGCAGCTGATGCGCCGCTACACCCTGTACGGCTATCTGCGGCCGACGGAAGTGCACGCCGTCATCACACCGGTACCTGGTGGTGC]




>consensus_4001#1
CCGGCGCATCGACGCACAATGCACCGCGGATTAAGTTACAGCATCAATGCCGCGCACTAC
CACCCACAGCACATCCGCGACAGAACGGCTTGCTGAGGTGTTCCTTTTTGCGGTGTTGTG
TTGTGTTGCAAAAGGGAAAAAAGCGCGATCGTGTTTGGCCGGAGGCGCCGTAACTCGGTG
CTGGAAGTGAGCGGAAGTCAGAAGATCACCCAGCAGCAGTACCGTGCCCTGCTGGCCTGC
ATCGATTATCTGGAGCAACACATTGGCGTTTACGGGCTGTTTGTGACCGGCGGTAGCGTA
ACGCACGTGAAAAGAATATTCGACAAGCTGAAAGCTGGCTGTCCACTGTTGCTGGATTAC
CTGCGCTCGGCCCATGCACCGCGGGAATGTGCGATGGCTTTCCATCAGTTCCTTTCCCTG
TATCAGGTGCAAGTGCTTCCTCAGCGTTGTGTCGATGTCGTGCTGGGGGATGTGGCCGGC
GTACCGAAGCGGCTGATCGCACTCGATGTGCTGAACCTGCTGCACGAAGAGTACGACGAT
ACGCGCCTTCACTTTGCCAAGCGCTATCTGCAGCTGATGCGCCGCTACACCCTGTACGGC
TATCTGCGGCCGACGGAAGTGCACGCCGTCATCACACCGGTACCTGGTGGTGC

consensusID : consensus_4001#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 483
fasta sequence

                              [CAGAATNGCCCGAGGCTATGCCTGTTTTTTTTTTTTTTTTTTGCTAGCATGTACGGTATAATTTATTTTGATTGTAACTGGTGGTCCAGCCACGCTGACCCAATTTGGCGGCTTTCCTAGCAACAAGGCAGACCGGCGGAGACAGGACGGAAAAGAATATCGCATTACATGCCATTCGATGGAATAAAACACTTGTGAAATGAATTTTAAACAAAAGAAAGCCTAACCTAAACATCAGCAGTTGCCGTATGTAACGTTATATCGCCCCCGCTACGTTACAAAACTGCTGCGTGTACTGCGTGGTGCTTTGCGTTTTGCGCGCGCTGTGTGTTGTGTCTTGCGCATCTGACGCACAATGCACCGCGGATTAAGTTACAGCATCAACGCCGCGCACTAACACCCACAGCACGTCCGCGACAGAACGGCTTGCTGAGGTGTTCCTTTTTGGGGTGTAGTGTATGTGTTGCAAAAAAAAAAAAAAAA]

[+] EMBL AL713818             [CAGAATNGCCCGAGGCTATGCCTGTTTTTTTTTTTTTTTTTTGCTAGCATGTACGGTATAATTTATTTTGATTGTAACTGGTGGTCCAGCCACGCTGACCCAATTTGGCGGCTTTCCTAGCAACAAGGCAGACCGGCGGAGACAGGACGGAAAAGAATATCGCATTACATGCCATTCGATGGAATAAAACACTTGTGAAATGAATTTTAAACAAAAGAAAGCCTAACCTAAACATCAGCAGTTGCCGTATGTAACGTTATATCGCCCCCGCTACGTTACAAAACTGCTGCGTGTACTGCGTGGTGCTTTGCGTTTTGCGCGCGCTGTGTGTTGTGTCTTGCGCATCTGACGCACAATGCACCGCGGATTAAGTTACAGCATCAACGCCGCGCACTAACACCCACAGCACGTCCGCGACAGAACGGCTTGCTGAGGTGTTCCTTTTTGGGGTGTAGTGTATGTGTTGCAAAAAAAAAAAAAAAA]




>consensus_4001#2
CAGAATNGCCCGAGGCTATGCCTGTTTTTTTTTTTTTTTTTTGCTAGCATGTACGGTATA
ATTTATTTTGATTGTAACTGGTGGTCCAGCCACGCTGACCCAATTTGGCGGCTTTCCTAG
CAACAAGGCAGACCGGCGGAGACAGGACGGAAAAGAATATCGCATTACATGCCATTCGAT
GGAATAAAACACTTGTGAAATGAATTTTAAACAAAAGAAAGCCTAACCTAAACATCAGCA
GTTGCCGTATGTAACGTTATATCGCCCCCGCTACGTTACAAAACTGCTGCGTGTACTGCG
TGGTGCTTTGCGTTTTGCGCGCGCTGTGTGTTGTGTCTTGCGCATCTGACGCACAATGCA
CCGCGGATTAAGTTACAGCATCAACGCCGCGCACTAACACCCACAGCACGTCCGCGACAG
AACGGCTTGCTGAGGTGTTCCTTTTTGGGGTGTAGTGTATGTGTTGCAAAAAAAAAAAAA
AAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4001#0      CCGCGTCGCGGTGCAATCAACAACAACGCTCGGTTT-CCAAATGATTGTGTTTAAATTAA 59
consensus_4001#1      -------CCGGCGCATCGACGCACAATGCACCGCGGATTAAGTTACAGCATC--AATGCC 51
consensus_4001#2      ------------------------------------------------------------
                                                                                  

consensus_4001#0      GTGTAATAAGTTAAGCAGAAAACACACGTTGTTCCAAATTGTGCTCCAATGTTTTGGAAA 119
consensus_4001#1      GCGCACTA--CCACCCACAGCACATCCGCGACAGAACGGCTTGCTGAGGTGTTCCTTTTT 109
consensus_4001#2      -------------------------------CAGAATNGCCCGAGGCTATGCCTGTTTTT 29
                                                         *      *      **         

consensus_4001#0      TGGCTGGAGGACAACTTCAAGTACCGGCGAAAGTGCGCGATCGTGTTTGGCCGGAGGCGC 179
consensus_4001#1      GCGGTGTTGTGTTGTGTTGCAAAA-GGGAAAAAAGCGCGATCGTGTTTGGCCGGAGGCGC 168
consensus_4001#2      TTTTTTTTTTTTTGC-TAGCATGT-------ACGGTATAATTTATTTTGATTGTAACTG- 80
                          *           *              *  *    **    ****   * *   * 

consensus_4001#0      CGTAACTCGGTGCTGGAAGTGAGCGGAAGTCAGAAGATCACCCAGCAGCAGTACCGTGCC 239
consensus_4001#1      CGTAACTCGGTGCTGGAAGTGAGCGGAAGTCAGAAGATCACCCAGCAGCAGTACCGTGCC 228
consensus_4001#2      -GTGGTCCAGCC----ACGCTGACCCAATTTGGCGGCTTTCCTAGCAACAAG-------- 127
                       **    * *      * *    *  ** *  *  * *  ** **** **          

consensus_4001#0      CTGCTGGGCTGCATCGATTATCTGGAGCAACACATTGGCGTTTACGGGCTGTTTGTGACC 299
consensus_4001#1      CTGCTGGCCTGCATCGATTATCTGGAGCAACACATTGGCGTTTACGGGCTGTTTGTGACC 288
consensus_4001#2      --GCAGACCGGCGGAGACAGGACGGAAAAGAATATCGCA--TTACATGCCATT------C 177
                        ** *  * **   **      ***  *  * ** *    ****  **  **      *

consensus_4001#0      GGCGGTAGCGTAACGCACGTGAAAAGAATATTCGACAAGCTGAAAGCTGGCTGTCCACTG 359
consensus_4001#1      GGCGGTAGCGTAACGCACGTGAAAAGAATATTCGACAAGCTGAAAGCTGGCTGTCCACTG 348
consensus_4001#2      GATGG-AATAAAACACTTGTGAAATGAATTTTAAACAAAAGAAAGCCTAAC--------- 227
                      *  ** *    *** *  ****** **** **  ****    **  **  *         

consensus_4001#0      CTGCTGGATTACCTGCGCTCGGCCCATGCACCGCGGGAATGTGCGATGGCTTTCCATCAG 419
consensus_4001#1      TTGCTGGATTACCTGCGCTCGGCCCATGCACCGCGGGAATGTGCGATGGCTTTCCATCAG 408
consensus_4001#2      ---CTAAAC-ATCAGCAGTTGCCGTATGTAACGTTATATCGCCC--CCGCTACGTTACAA 281
                         **  *  * * **  * * *  *** * **    *  *  *    ***      ** 

consensus_4001#0      TTCCTTTCCCTGTATCAGGTGCAAGTGCTTCCTCAGCGTTGTGTCGATGTCGTGCTGGGG 479
consensus_4001#1      TTCCTTTCCCTGTATCAGGTGCAAGTGCTTCCTCAGCGTTGTGTCGATGTCGTGCTGGGG 468
consensus_4001#2      AACTGCTGCGTGTACTGCGTG---GTGCTTT----GCGTTTTGC-----GCGCGCTGTGT 329
                        *   * * ****    ***   ******     ***** **       ** **** * 

consensus_4001#0      GATGTGGCCGGTGTCCCGAAGCGGCTGATCGCACTCGACGTGCTGAACCTGCTGCACGAA 539
consensus_4001#1      GATGTGGCCGGCGTACCGAAGCGGCTGATCGCACTCGATGTGCTGAACCTGCTGCACGAA 528
consensus_4001#2      GTTGTGTCTTGCGCATC----TGACGCACAATGCACCGCG-GATTAAGTTACAGCATCAA 384
                      * **** *  * *   *     * *  *     * *   * * * **  * * ***  **

consensus_4001#0      GA--GTACGACGATACGCGCCTTCACTTTGCCA-AGCGCTATCTGCAGCTGATGCGCCGC 596
consensus_4001#1      GA--GTACGACGATACGCGCCTTCACTTTGCCA-AGCGCTATCTGCAGCTGATGCGCCGC 585
consensus_4001#2      CGCCGCGCACTAACACCCACAGCACGTCCGCGACAGAACGGCTTGCTGA-GGTGTTCCTT 443
                          *  *    * ** * *      *  ** * **  *    *** *  * **  **  

consensus_4001#0      TACACCCTGTACGGCTATCTGCGGCCGACGGAAGTGCACGCCGTCATCACACCG-TACCT 655
consensus_4001#1      TACACCCTGTACGGCTATCTGCGGCCGACGGAAGTGCACGCCGTCATCACACCGGTACCT 645
consensus_4001#2      TTTGGGGTGTA-GTGTATGTGTTGCAAAAAAAAAAAAAAAA------------------- 483
                      *      **** *  *** **  **  *   **    *                      

consensus_4001#0      GGTGGTGCCGA 666
consensus_4001#1      GGTGGTGC--- 653
consensus_4001#2      -----------