These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4005#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 933 fasta sequence [CCGGCCGAAGAACAAGGAGAAGCTGTCCGACGCGCTCAAGTCGTGCAATGAAATCTTGAAGGAGCTGTTCTCCAAGAAGCATTCGGGTTACGCCTGGCCATTCTACAAACCGGTGGACGCGGAGCTGCTCGGTTTGCACGACTACCACGACATAATCAAAAAACCGATGGACCTCGGCACGGTGAAGCGAAAAATGGACAACCGGGAGTACAAGTCGGCGCCGGAGTTTGCCGCGGACGTTCGGTTAATATTCACCAATTGCTACAAGTACAACCCGCCAGATCATGATGTGGTCGCGATGGGCCGGAAGCTGCAGGACGTGTTCGAGATGCGGCTTGCCAACATACCGGACGAACCGGTAAACAACGTTGCCCCGCACCATCAGTGCAAGGAGAGCGAACCGTCGTCCTCGAGCGACTCGAACGACAGCGACGAAGAGAGCGAGTCGGACGAAGAGTGTGCACAGAAATTGAAGCTGCTCGAGAAGCAACTGTTCGAGATGCAGGAGCGCATGCGGAAGCTCACCGAGGAGGCACTGCTGAAGAAGAAGCAGAAGAAGAAGTCAAAGGACAAAAAGAAATCTTCTGTTGCCGGACCGGGCGGTGCGGCCGGCGGTGGTGCGAGTGATATTAAGGGGATGATGGATCCCCACGCCGGGCTCAGTATGCCGCACGGTCCCGGCAAGGCGATGCATCAAATGGCGGGCGTAATGGGTCAACCGCCGATGGGCGGTGCAGGGGCGGCCCCGGTAATGCCAGCAGCCGCCACCAAGGCGAAGGCGAAGGGCCAGCGAGCACCGAAAGCGGGCGGTGTGGCTGGGGGCGCTGCATCCAATGCACCGGCAAAGCGCGCTTAAGAACGCAGGCGCTGCTGGTGGCACCAGGTGCGCCTCGGGCCCCGAAACAAGAAGAAGGCGTCCCAGAACGTTTCGAA] [+] EMBL BM618907 [CCGGCCGAAGAACAAGGAGAAGCTGTCCGACGCGCTCAAGTCGTGCAATGAAATCTTGAAGGAGCTGTTCTCCAAGAAGCATTCGGGTTACGCCTGGCCATTCTACAAACCGGTGGACGCGGAGCTGCTCGGTTTGCACGACTACCACGACATAATCAAAAAACCGATGGACCTCGGCACGGTGAAGCGAAAAATGGACAACCGGGAGTACAAGTCGGCGCCGGAGTTTGCCGCGGACGTTCGGTTAATATTCACCAATTGCTACAAGTACAACCCGCCAGATCATGATGTGGTCGCGATGGGCCGGAAGCTGCAGGACGTGTTCGAGATGCGGCTTGCCAACATACCGGACGAACCGGTAAACAACGTTGCCCCGCACCATCAGTGCAAGGAGAGCGAACCGTCGTCCTCGAGCGACTCGAACGACAGCGACGAAGAGAGCGAGTCGGACGAAGAGTGTGCACAGAAATTGAAGCTGCTCGAGAAGCAACTGTTCGAGATGCAGGAGCGCATGCGGAAGCTCACCGAGGAGGCACTGCTGAAGAAGAAGCAGAAGAAGAAGTCAAAGGACAAAAAGAAATCTTCTGTTGCCGGACCGGGCGGTGCGGCCGGCGGTGGTGCGAGTGATATTAAGGGGATGATGGATCCCCACGCCGGGCTCAGTATGCCGCACGGTCCCGGCAAGGCGATGCATCAAAT ] [+] EMBL BM597323 [ cCGCGATGGGCCGGAAGCTGCAGGACGTGTTCGAGATGCGGCTTGCCAACATACCGGACGAACCGGTAAACAACGTTGCCCCGCACCATCAGTGCAAGGAGAGCGAACCGTCGTCCTCGAGCGACTCGAACGACAGCGACGAAGAGAGCGAGTCGGACGAAGAGTGTGCACAGAAATTGAAGCTGCTCGAGAAGCAACTGTTCGAGATGCAGGAGCGCATGCGGAAGCTCACCGAGGAGGCACTGCTGAAGAAGAAGCAGAAGAAGAAGTCAAAGGACAAAAAGAAATCTTCTGTTGCCGGACCGGGCGGTGCGGCCGGCGGGGGTGCGAGTGATATTAAGGGGATGATGGATCCCCACGCCGGGCTCAGTATGCCGCACGGTCCCGGCAAGGCGATGCATCAAATGGCGGGCGTAATGGGTCAACCGCCGATGGGCGGTGCAGGGGCGGCCCCGGTAATGCCAGCAGCCGCCACCAAGGCGAAGGCGAAGGGCCAGCGAGCACCGAAAGCGGGCGGTGTGGCTGGGGGCGCTGCATCCAATGCACCGGCAAAGCGCGCTTAAGAACGCAGGCGCTGCTGGTGGCACCAGGTGCGCCTCGGGCCCCGAAACAAGAAGAAGGCGTCCCAGAACGTTTCGAA] consensusID : consensus_4005#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 277 fasta sequence [CAGAAGCTCAGGCAGAATCGCCACGAGGTCANCCAAGAAGCATTCGGGTTACGCCTGGCCATTCTACAAACCGGTGGACGCGGAGCTGCTCGGTTTGCACGACTACCACGACATAATCAAAAAACCGATGGACCTCGGCACGGTGAAGCGAAAAATGGACAACCGGGAGTACAAGTCGGCGCCGGAGTTTGCCGCGGACGTTCGGTTAATATTCACCAATTGCTACAAGGTACAACCGCGCAAGGATCATGATGTGGNTCGCNGGATGGGGCCGGAA] [+] EMBL BX466540 [CAGAAGCTCAGGCAGAATCGCCACGAGGTCANCCAAGAAGCATTCGGGTTACGCCTGGCCATTCTACAAACCGGTGGACGCGGAGCTGCTCGGTTTGCACGACTACCACGACATAATCAAAAAACCGATGGACCTCGGCACGGTGAAGCGAAAAATGGACAACCGGGAGTACAAGTCGGCGCCGGAGTTTGCCGCGGACGTTCGGTTAATATTCACCAATTGCTACAAGGTACAACCGCGCAAGGATCATGATGTGGNTCGCNGGATGGGGCCGGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4005#0 CCGGCCGAAGAACAAGGAGAAGCTGTCCGACGCGCTCAAGTCGTGCAATGAAATCTTGAA 60 consensus_4005#1 ------------------------------------CAGAAGCTCAGGCAGAATCGCCAC 24 ** * **** * consensus_4005#0 GGAGCTGTTCTCCAAGAAGCATTCGGGTTACGCCTGGCCATTCTACAAACCGGTGGACGC 120 consensus_4005#1 GAGGTCAN---CCAAGAAGCATTCGGGTTACGCCTGGCCATTCTACAAACCGGTGGACGC 81 * * ************************************************* consensus_4005#0 GGAGCTGCTCGGTTTGCACGACTACCACGACATAATCAAAAAACCGATGGACCTCGGCAC 180 consensus_4005#1 GGAGCTGCTCGGTTTGCACGACTACCACGACATAATCAAAAAACCGATGGACCTCGGCAC 141 ************************************************************ consensus_4005#0 GGTGAAGCGAAAAATGGACAACCGGGAGTACAAGTCGGCGCCGGAGTTTGCCGCGGACGT 240 consensus_4005#1 GGTGAAGCGAAAAATGGACAACCGGGAGTACAAGTCGGCGCCGGAGTTTGCCGCGGACGT 201 ************************************************************ consensus_4005#0 TCGGTTAATATTCACCAATTGCTACAAG-TACAACC-CGCCAG-ATCATGATGTGGT--- 294 consensus_4005#1 TCGGTTAATATTCACCAATTGCTACAAGGTACAACCGCGCAAGGATCATGATGTGGNTCG 261 **************************** ******* *** ** ************ consensus_4005#0 CGCGATGGG-CCGGAAGCTGCAGGACGTGTTCGAGATGCGGCTTGCCAACATACCGGACG 353 consensus_4005#1 CNGGATGGGGCCGGAA-------------------------------------------- 277 * ****** ****** consensus_4005#0 AACCGGTAAACAACGTTGCCCCGCACCATCAGTGCAAGGAGAGCGAACCGTCGTCCTCGA 413 consensus_4005#1 ------------------------------------------------------------ consensus_4005#0 GCGACTCGAACGACAGCGACGAAGAGAGCGAGTCGGACGAAGAGTGTGCACAGAAATTGA 473 consensus_4005#1 ------------------------------------------------------------ consensus_4005#0 AGCTGCTCGAGAAGCAACTGTTCGAGATGCAGGAGCGCATGCGGAAGCTCACCGAGGAGG 533 consensus_4005#1 ------------------------------------------------------------ consensus_4005#0 CACTGCTGAAGAAGAAGCAGAAGAAGAAGTCAAAGGACAAAAAGAAATCTTCTGTTGCCG 593 consensus_4005#1 ------------------------------------------------------------ consensus_4005#0 GACCGGGCGGTGCGGCCGGCGGTGGTGCGAGTGATATTAAGGGGATGATGGATCCCCACG 653 consensus_4005#1 ------------------------------------------------------------ consensus_4005#0 CCGGGCTCAGTATGCCGCACGGTCCCGGCAAGGCGATGCATCAAATGGCGGGCGTAATGG 713 consensus_4005#1 ------------------------------------------------------------ consensus_4005#0 GTCAACCGCCGATGGGCGGTGCAGGGGCGGCCCCGGTAATGCCAGCAGCCGCCACCAAGG 773 consensus_4005#1 ------------------------------------------------------------ consensus_4005#0 CGAAGGCGAAGGGCCAGCGAGCACCGAAAGCGGGCGGTGTGGCTGGGGGCGCTGCATCCA 833 consensus_4005#1 ------------------------------------------------------------ consensus_4005#0 ATGCACCGGCAAAGCGCGCTTAAGAACGCAGGCGCTGCTGGTGGCACCAGGTGCGCCTCG 893 consensus_4005#1 ------------------------------------------------------------ consensus_4005#0 GGCCCCGAAACAAGAAGAAGGCGTCCCAGAACGTTTCGAA 933 consensus_4005#1 ---------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||