These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4006#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 883 fasta sequence [CCGCAAATAGCGTGTGTTAGCTGCGGCAGTATCGCTTGTGCATGATGCACCTGGTGCGCTAGAAGTGTTTGCAAAGTAATTCGTCCCCACATCAGAATAGCGGAGCGCTGCATATTGCCATAGGCCGAGGCACCCTCCGATCTGATCAAACCGCACACGTACGCCACGAAGCAAAAAGCGGAAGGAAAGGAAAAGAAAAAGAATCAAAATGAACCACACGAAAAGCCGGGGGACGAGGGTCCCGCTGAAGGAAGAAACAACGTCCTACCGGGCGTACCTTGCGCTGGGACTGTTTCTTGTGATTTTGTTCCTCTCCTTCCCGACCCTTTGCGGTGCCCATGGACAGCACGCTCACGATCACGATCATCTTCACGATGAGCATGATCATCATCATCATCATCACGAAAGTCCCAGTTTTAAGTATTCGAAGCATGCTAACGAGGTGTACGAAGAGGAACCGGGTCCCGGCAGTTCCACATCATCACCACCACCACCATCATCATGATGGTGGAGATGCGGGCCATGATCATCATCATCATCATGGCGGTCACCATCAACATCATCATCATCATCACCACGAAAAGTCAACAAGCGATAGTAAAGCACCGAGAGATACGTTCTACATCTGGGTGCATTCGTTGGGTTCAACTTTATTGATTAGTGGCGGCACCGTGTTTTCATTCTTTTTGCCATCCCGCTGGATAATACGGAAGAGATGCAGCCCCGGCTGAAAACGCTGCTTGCCTTTGCCTCGGGCGGCTACTTGGAGATGCTTTCCTACACTTGATTCCGCACGCCATCCAGCCCCATTCGCACGGGGACGATCATTCGCACGGTCACCACTCGCACGGTCATTCGCATGGTCACTCGCATGGTCATGGAG] [+] EMBL BM590958 [CCGCAAATAGCGTGTGTTAGCTGCGGCAGTATCGCTTGTGCATGATGCACCTGGTGCGCTAGAAGTGTTTGCAAAGTAATTCGTCCCCACATCAGAATAGCGGAGCGCTGCATATTGCCATAGGCCGAGGCACCCTCCGATCTGATCAAACCGCACACGTACGCCACGAAGCAAAAAGCGGAAGGAAAGGAAAAGAAAAAGAATCAAAATGAACCACACGAAAAGCCGGGGGACGAGGGTCCCGCTGAAGGAAGAAACAACGTCCTACCGGGCGTACCTTGCGCTGGGACTGTTTCTTGTGATTTTGTTCCTCTCCTTCCCGACCCTTTGCGGTGCCCATGGACAGCACGCTCACGATCACGATCATCTTCACGATGAGCATGATCATCATCATCATCATCACGAAAGTCCCAGTTTTAAGTATTCGAAGCATGCTAACGAGGTGTACGAAGAGGAACCGGGTCCCGGCAGTTCCACATCATCACCACCACCACCATCATCATGATGGTGGAGATGCGGGCCATGATCATCATCATCATCATGGCGGTCACCATCAACATCATCATCATCATCACCACGAAAAGTCAACAAGCGATAGTAAAGCACCGAGAGATACGTTCTACATCTGGGTGCATTCGTTGGGTTCAACTTTATTGATTAGTGGCGGCAC ] [+] EMBL AL929695 [ tATGATGGTGGAGAT NGGG CATGAT ATCATCATCATCATGGCGGTCACCATCAACATCATCATCATCATCACCACGAAAAGTCAACAAGCGATAGTAAAGCACCGAGAGATACGTTCTACATCTGGGTGCATTCGTTGGGTTCAACTTTGTTGATTAGT GCGGCACCGTGTTTTCATTCTTTTTGCCATCCCGCTGGATAATACGGAAGAGATGCAGCCCCGGCTGAAAACGCTGCTTGCCTTTGCCTCGGGCGGCTACTTGGAGATGCTTTCCTACACTTGATTCCGCACGCCATCCAGCCCCATTCGCACGGGGACGATCATTCGCACGGTCACCACTCGCACGGTCATTCGCATGGTCACTCGCATGGTCATGGAG] consensusID : consensus_4006#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 532 fasta sequence [CCGCCCACGCGTCCGCATCATCATCATGGCGGTCACCATCAACATCATCATCATCATCACCACGAAAAGTCAACAAGCGATAGTAAAGCACCGAGAGATACGTTCTACATCTGGGTGCATTCGTTGGGTTCAACTTTATTGATTAGTGCGGCACCGTTTTTCATTCTGTTTGCCATCCCGCTGGACAATACGGAAGAGATGCAGCCCCGGCTGAAAACGTTGCTTGCCTTTGCCTCGGGCGGCCTACTTGGAGATGCTTTCCTACACTTGATTCCGCACGCTATCCAGCCCCATTCGCACGGGGACGATCATTCGCATGGTCACTCGCACGGTCACTCGCACGGTCACTCGCATGGCCATGGAGAGGCGGACGGTCACGAAAGCCACGGGCACGATATGCGCGTCGGGCTGTGGGTTTTGGCCGGCATCATCGTGTTTTTGGCGGTGGAAAAGTTTGTCCGATTGATTAAGGGAGATGCGGGCCATGGACATGGTCACGGCCACAGCCACGGAGGTGCAAAGCCTGCCGTAC] [+] EMBL BM633687 [CCGCCCACGCGTCCGCATCATCATCATGGCGGTCACCATCAACATCATCATCATCATCACCACGAAAAGTCAACAAGCGATAGTAAAGCACCGAGAGATACGTTCTACATCTGGGTGCATTCGTTGGGTTCAACTTTATTGATTAGTGCGGCACCGTTTTTCATTCTGTTTGCCATCCCGCTGGACAATACGGAAGAGATGCAGCCCCGGCTGAAAACGTTGCTTGCCTTTGCCTCGGGCGGCCTACTTGGAGATGCTTTCCTACACTTGATTCCGCACGCTATCCAGCCCCATTCGCACGGGGACGATCATTCGCATGGTCACTCGCACGGTCACTCGCACGGTCACTCGCATGGCCATGGAGAGGCGGACGGTCACGAAAGCCACGGGCACGATATGCGCGTCGGGCTGTGGGTTTTGGCCGGCATCATCGTGTTTTTGGCGGTGGAAAAGTTTGTCCGATTGATTAAGGGAGATGCGGGCCATGGACATGGTCACGGCCACAGCCACGGAGGTGCAAAGCCTGCCGTAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4006#0 CCGCAAATAGCGTGTGTTAGCTGCGGCAGTATCGCTTGTGCATGATGCACCTGGTGCGCT 60 consensus_4006#1 ------------------------------------------------------------ consensus_4006#0 AGAAGTGTTTGCAAAGTAATTCGTCCCCACATCAGAATAGCGGAGCGCTGCATATTGCCA 120 consensus_4006#1 ------------------------------------------------------------ consensus_4006#0 TAGGCCGAGGCACCCTCCGATCTGATCAAACCGCACACGTACGCCACGAAGCAAAAAGCG 180 consensus_4006#1 ------------------------------------------------------------ consensus_4006#0 GAAGGAAAGGAAAAGAAAAAGAATCAAAATGAACCACACGAAAAGCCGGGGGACGAGGGT 240 consensus_4006#1 ------------------------------------------------------------ consensus_4006#0 CCCGCTGAAGGAAGAAACAACGTCCTACCGGGCGTACCTTGCGCTGGGACTGTTTCTTGT 300 consensus_4006#1 ------------------------------------------------------------ consensus_4006#0 GATTTTGTTCCTCTCCTTCCCGACCCTTTGCGGTGCCCATGGACAGCACGCTCACGATCA 360 consensus_4006#1 ------------------------------------------------------------ consensus_4006#0 CGATCATCTTCACGATGAGCATGATCATCATCATCATCATCACGAAAGTCCCAGTTTTAA 420 consensus_4006#1 ------------------------------------------------------------ consensus_4006#0 GTATTCGAAGCATGCTAACGAGGTGTACGAAGAGGAACCGGGTCCCGGCAGTTCCACATC 480 consensus_4006#1 ------------------------------------------------------------ consensus_4006#0 ATCACCACCACCACCATCATCATGATGGTGGAGATGCGGGCCATG-ATCATCATCATCAT 539 consensus_4006#1 ------------------------------------CCGCCCACGCGTCCGCATCATCAT 24 * * *** * ** ********* consensus_4006#0 CATGGCGGTCACCATCAACATCATCATCATCATCACCACGAAAAGTCAACAAGCGATAGT 599 consensus_4006#1 CATGGCGGTCACCATCAACATCATCATCATCATCACCACGAAAAGTCAACAAGCGATAGT 84 ************************************************************ consensus_4006#0 AAAGCACCGAGAGATACGTTCTACATCTGGGTGCATTCGTTGGGTTCAACTTTATTGATT 659 consensus_4006#1 AAAGCACCGAGAGATACGTTCTACATCTGGGTGCATTCGTTGGGTTCAACTTTATTGATT 144 ************************************************************ consensus_4006#0 AGTGGCGGCACCGTGTTTTCATTCTTTTTGCCATCCCGCTGGATAATACGGAAGAGATGC 719 consensus_4006#1 AGTG-CGGCACCGT-TTTTCATTCTGTTTGCCATCCCGCTGGACAATACGGAAGAGATGC 202 **** ********* ********** ***************** **************** consensus_4006#0 AGCCCCGGCTGAAAACGCTGCTTGCCTTTGCCTCGGGCGGC-TACTTGGAGATGCTTTCC 778 consensus_4006#1 AGCCCCGGCTGAAAACGTTGCTTGCCTTTGCCTCGGGCGGCCTACTTGGAGATGCTTTCC 262 ***************** *********************** ****************** consensus_4006#0 TACACTTGATTCCGCACGCCATCCAGCCCCATTCGCACGGGGACGATCATTCGCACGGTC 838 consensus_4006#1 TACACTTGATTCCGCACGCTATCCAGCCCCATTCGCACGGGGACGATCATTCGCATGGTC 322 ******************* *********************************** **** consensus_4006#0 ACCACTCGCACGGTCATTCGCATGGTCACTCGCATGGTCATGGAG--------------- 883 consensus_4006#1 ---ACTCGCACGGTCACTCGCACGGTCACTCGCATGGCCATGGAGAGGCGGACGGTCACG 379 ************* ***** ************** ******* consensus_4006#0 ------------------------------------------------------------ consensus_4006#1 AAAGCCACGGGCACGATATGCGCGTCGGGCTGTGGGTTTTGGCCGGCATCATCGTGTTTT 439 consensus_4006#0 ------------------------------------------------------------ consensus_4006#1 TGGCGGTGGAAAAGTTTGTCCGATTGATTAAGGGAGATGCGGGCCATGGACATGGTCACG 499 consensus_4006#0 --------------------------------- consensus_4006#1 GCCACAGCCACGGAGGTGCAAAGCCTGCCGTAC 532 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||