cluster # 4009

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Anopheles gambiae
cluster # 4009 cluster # 4009 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4009#0 length = 685 sequences # 1

consensus_4009#1 length = 474 sequences # 2

consensusID : consensus_4009#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 685
fasta sequence

                              [CCGCGGACGCGTGGGGTGTCTAGCGCGCTGTGTGCACGTAGCCAATTTTCACGTTCAAGAACACACTCACGTACAAATGCACTCGTGTGTCGCAAAGGGCAGGATGCAGTAACTCGTAGACCATTAGGGTTGAATGGTTATGGGCATTACAGGTTGACCTCGTGCCCTGAAATGGGCAGCAAACAACGAGGCAAGCAGCTTGTCTTTGTGTTCCCGATTCGGAAGTATCTGGCGGAAGCTGCAGCGACGAGAAGCCCATGGTGTCGTCCCGAGATGCTCATTTTTCCTCCCTCTCCAGTGAACGGTATCTCTTATAGATATGACCGTTTTCATCGTAATCGAAATCATTTATACCCTGCCATATTAGACAGATAAAGACACACACACACACACATCAGCACGTGTGATTGTATCCTAAATGGCACAGGATCGACTTGCACAGGCTGACACCCTGACCTAAGCCGCTACTACCCACATGGCTACAGGTGTAGGAGGCAATATTTCTCTTGAAACAGAACAGGAAAGCTGCAAGGAAAGCTCCGATGAGAGAGTAATTAATGAAAGCGTGACACAATGTCGGCAGCCATTTGTTTGTTGATCACACGTAAGCAAACCGATATATAGTGAGAGCGAGAAGGTTCAGCAGCAGTAGACACGGGAGTAAAGTTTAAACGAAACCAACCAA]

[+] EMBL BM597139             [CCGCGGACGCGTGGGGTGTCTAGCGCGCTGTGTGCACGTAGCCAATTTTCACGTTCAAGAACACACTCACGTACAAATGCACTCGTGTGTCGCAAAGGGCAGGATGCAGTAACTCGTAGACCATTAGGGTTGAATGGTTATGGGCATTACAGGTTGACCTCGTGCCCTGAAATGGGCAGCAAACAACGAGGCAAGCAGCTTGTCTTTGTGTTCCCGATTCGGAAGTATCTGGCGGAAGCTGCAGCGACGAGAAGCCCATGGTGTCGTCCCGAGATGCTCATTTTTCCTCCCTCTCCAGTGAACGGTATCTCTTATAGATATGACCGTTTTCATCGTAATCGAAATCATTTATACCCTGCCATATTAGACAGATAAAGACACACACACACACACATCAGCACGTGTGATTGTATCCTAAATGGCACAGGATCGACTTGCACAGGCTGACACCCTGACCTAAGCCGCTACTACCCACATGGCTACAGGTGTAGGAGGCAATATTTCTCTTGAAACAGAACAGGAAAGCTGCAAGGAAAGCTCCGATGAGAGAGTAATTAATGAAAGCGTGACACAATGTCGGCAGCCATTTGTTTGTTGATCACACGTAAGCAAACCGATATATAGTGAGAGCGAGAAGGTTCAGCAGCAGTAGACACGGGAGTAAAGTTTAAACGAAACCAACCAA]




>consensus_4009#0
CCGCGGACGCGTGGGGTGTCTAGCGCGCTGTGTGCACGTAGCCAATTTTCACGTTCAAGA
ACACACTCACGTACAAATGCACTCGTGTGTCGCAAAGGGCAGGATGCAGTAACTCGTAGA
CCATTAGGGTTGAATGGTTATGGGCATTACAGGTTGACCTCGTGCCCTGAAATGGGCAGC
AAACAACGAGGCAAGCAGCTTGTCTTTGTGTTCCCGATTCGGAAGTATCTGGCGGAAGCT
GCAGCGACGAGAAGCCCATGGTGTCGTCCCGAGATGCTCATTTTTCCTCCCTCTCCAGTG
AACGGTATCTCTTATAGATATGACCGTTTTCATCGTAATCGAAATCATTTATACCCTGCC
ATATTAGACAGATAAAGACACACACACACACACATCAGCACGTGTGATTGTATCCTAAAT
GGCACAGGATCGACTTGCACAGGCTGACACCCTGACCTAAGCCGCTACTACCCACATGGC
TACAGGTGTAGGAGGCAATATTTCTCTTGAAACAGAACAGGAAAGCTGCAAGGAAAGCTC
CGATGAGAGAGTAATTAATGAAAGCGTGACACAATGTCGGCAGCCATTTGTTTGTTGATC
ACACGTAAGCAAACCGATATATAGTGAGAGCGAGAAGGTTCAGCAGCAGTAGACACGGGA
GTAAAGTTTAAACGAAACCAACCAA

consensusID : consensus_4009#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 474
fasta sequence

                              [CCGATAGATATGACCGTTTTCATCGTAATCGAAATCATTTATACCCTGCCATATTAGACAGATAAAGACACACACACACACATCAGCACGTGTGATTGTATCCTAAATGGCACAGGATCGACTCTGACCTAAACAGACTACTACCCACATGGCTACAGGTGTAGGAGGCAATATTTCCCTTAAAACAGAACAGGAAAGCTGCAAGGAAAGCTCCGATGAGAGAGTAATTAATGAAAGCGTGACACAATGTCGGCAGCCATTTGTTTGTTGATCACACGTAAGTAAACCGATATATAGTGAGAGCGAGAAGGTTCAGCAGCAGTAGAAACGGGAGTAAAGATTAAACGAAACCAACCAACAACAAAAAAAAAGAGAAACACATCCCGTAAAAGCATGTTTGTATTAGCGATAAAGGAAACGATAATGATCAACACGTTGATCGTAGATACATAGTGAATGAGAATTATCTTGGCA]

[+] EMBL BM653061             [CCGATAGATATGACCGTTTTCATCGTAATCGAAATCATTTATACCCTGCCATATTAGACAGATAAAGACACACACACACACATCAGCACGTGTGATTGTATCCTAAATGGCACAGGATCGACTCTGACCTAAACAGACTACTACCCACATGGCTACAGGTGTAGGAGGCAATATTTCCCTTAAAACAGAACAGGAAAGCTGCAAGGAAAGCTCCGATGAGAGAGTAATTAATGAAAGCGTGACACAATGTCGGCAGCCATTTGTTTGTTGATCACACGTAAGTAAACCGATATATAGTGAGAGCGAGAAGGTTCAGCAGCAGTAGAAACGGGAGTAAAGATTAAACGAAACCAACCAACAACAAAAAAAAAGAGAAACACATCCCGTAAAAGCATGTTTGTATTAGCGATAAAGGAAACGATAATGATCAACACGTTGATCGTAGATACATAGTGAATGAGAATTATCTTGGCA]
[+] EMBL BM636538             [                                AATCATTTATACCCTGCCATATTAGACAGATAAAGACACACACACACACATCAGCACGTGTGATTGTATCCTAAATGGCACAGGATCGACTCTGACCTAAACAGACTACTACCCACATGGCTACAGGTGTAGGAGGCAATATTTCCCTTAAAACAGAACAGGAAAGCTGCAAGGAAAGCTCCGATGAGAGAGTAATTAATGAAAGCGTGACACAATGTCGGCAGCCATTTGTTTGTTG                                                                                                                                                                                                            ]




>consensus_4009#1
CCGATAGATATGACCGTTTTCATCGTAATCGAAATCATTTATACCCTGCCATATTAGACA
GATAAAGACACACACACACACATCAGCACGTGTGATTGTATCCTAAATGGCACAGGATCG
ACTCTGACCTAAACAGACTACTACCCACATGGCTACAGGTGTAGGAGGCAATATTTCCCT
TAAAACAGAACAGGAAAGCTGCAAGGAAAGCTCCGATGAGAGAGTAATTAATGAAAGCGT
GACACAATGTCGGCAGCCATTTGTTTGTTGATCACACGTAAGTAAACCGATATATAGTGA
GAGCGAGAAGGTTCAGCAGCAGTAGAAACGGGAGTAAAGATTAAACGAAACCAACCAACA
ACAAAAAAAAAGAGAAACACATCCCGTAAAAGCATGTTTGTATTAGCGATAAAGGAAACG
ATAATGATCAACACGTTGATCGTAGATACATAGTGAATGAGAATTATCTTGGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4009#0      CCGCGGACGCGTGGGGTGTCTAGCGCGCTGTGTGCACGTAGCCAATTTTCACGTTCAAGA 60
consensus_4009#1      ------------------------------------------------------------
                                                                                  

consensus_4009#0      ACACACTCACGTACAAATGCACTCGTGTGTCGCAAAGGGCAGGATGCAGTAACTCGTAGA 120
consensus_4009#1      ------------------------------------------------------------
                                                                                  

consensus_4009#0      CCATTAGGGTTGAATGGTTATGGGCATTACAGGTTGACCTCGTGCCCTGAAATGGGCAGC 180
consensus_4009#1      ------------------------------------------------------------
                                                                                  

consensus_4009#0      AAACAACGAGGCAAGCAGCTTGTCTTTGTGTTCCCGATTCGGAAGTATCTGGCGGAAGCT 240
consensus_4009#1      ------------------------------------------------------------
                                                                                  

consensus_4009#0      GCAGCGACGAGAAGCCCATGGTGTCGTCCCGAGATGCTCATTTTTCCTCCCTCTCCAGTG 300
consensus_4009#1      ------------------------------------------------------------
                                                                                  

consensus_4009#0      AACGGTATCTCTTATAGATATGACCGTTTTCATCGTAATCGAAATCATTTATACCCTGCC 360
consensus_4009#1      ----------CCGATAGATATGACCGTTTTCATCGTAATCGAAATCATTTATACCCTGCC 50
                                *  ***********************************************

consensus_4009#0      ATATTAGACAGATAAAGACACACACACACACACATCAGCACGTGTGATTGTATCCTAAAT 420
consensus_4009#1      ATATTAGACAGATAAAGACACACACACACACA--TCAGCACGTGTGATTGTATCCTAAAT 108
                      ********************************  **************************

consensus_4009#0      GGCACAGGATCGACTTGCACAGGCTGACACCCTGACCTAAGCCG-CTACTACCCACATGG 479
consensus_4009#1      GGCACAGGATCGACT----------------CTGACCTAAACAGACTACTACCCACATGG 152
                      ***************                ********* * * ***************

consensus_4009#0      CTACAGGTGTAGGAGGCAATATTTCTCTTGAAACAGAACAGGAAAGCTGCAAGGAAAGCT 539
consensus_4009#1      CTACAGGTGTAGGAGGCAATATTTCCCTTAAAACAGAACAGGAAAGCTGCAAGGAAAGCT 212
                      ************************* *** ******************************

consensus_4009#0      CCGATGAGAGAGTAATTAATGAAAGCGTGACACAATGTCGGCAGCCATTTGTTTGTTGAT 599
consensus_4009#1      CCGATGAGAGAGTAATTAATGAAAGCGTGACACAATGTCGGCAGCCATTTGTTTGTTGAT 272
                      ************************************************************

consensus_4009#0      CACACGTAAGCAAACCGATATATAGTGAGAGCGAGAAGGTTCAGCAGCAGTAGACACGGG 659
consensus_4009#1      CACACGTAAGTAAACCGATATATAGTGAGAGCGAGAAGGTTCAGCAGCAGTAGAAACGGG 332
                      ********** ******************************************* *****

consensus_4009#0      AGTAAAGTTTAAACGAAACCAACCAA---------------------------------- 685
consensus_4009#1      AGTAAAGATTAAACGAAACCAACCAACAACAAAAAAAAAGAGAAACACATCCCGTAAAAG 392
                      ******* ******************                                  

consensus_4009#0      ------------------------------------------------------------
consensus_4009#1      CATGTTTGTATTAGCGATAAAGGAAACGATAATGATCAACACGTTGATCGTAGATACATA 452
                                                                                  

consensus_4009#0      ----------------------
consensus_4009#1      GTGAATGAGAATTATCTTGGCA 474