cluster # 401

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 401 cluster # 401 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_401#0 length = 552 sequences # 1

consensus_401#1 length = 149 sequences # 1

consensusID : consensus_401#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 552
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGGGAAGCGGCCCAGCAGCGGGTGAACGCGCTGAAGCATCTGCAGGTCGAGTACACCAAGCTGGAGGCGAAGTTCTTCGAAGAGGTGTACCAGCTGGAGTGTAAATATCAGCAGCTCTACCAGCCGATCGTCGACCGGCGAAAGGAGATCGTGTCCGGCAAGGCCGACCCGACGCCGGAGGAGGCGGCCTGGGTGGATCCACCGCGCAAGAAGGAGGACGGCGAGGACGAGGAGGAGCAGGAGGAGGAGGACGACGAGATTAACGAGAAGCTGAAGAAGATGGCGCTCAACTACCACAAGGAGCTGCCGGCGAACGGGCAGGGCATCCCGAACTTCTGGCTGATGGTGTTCAAGAACACGGAAGCGCTGGCCGAGCTGGTGCACCCGCACGACGAGCCGGTGCTGGAGTACCTGCGCAACCTGAACATCGTGTACGAGAAGGAGCCGATGTCGTACGTGATCGAGTTCCACTTCGACCCGAACCCGTACTTCAAGGACACGGTGCTGACGAAGAAGTACTTCCTGCG]

[+] EMBL BM630837             [CCGCCCACGCGTCCGCCCACGCGTCCGGGAAGCGGCCCAGCAGCGGGTGAACGCGCTGAAGCATCTGCAGGTCGAGTACACCAAGCTGGAGGCGAAGTTCTTCGAAGAGGTGTACCAGCTGGAGTGTAAATATCAGCAGCTCTACCAGCCGATCGTCGACCGGCGAAAGGAGATCGTGTCCGGCAAGGCCGACCCGACGCCGGAGGAGGCGGCCTGGGTGGATCCACCGCGCAAGAAGGAGGACGGCGAGGACGAGGAGGAGCAGGAGGAGGAGGACGACGAGATTAACGAGAAGCTGAAGAAGATGGCGCTCAACTACCACAAGGAGCTGCCGGCGAACGGGCAGGGCATCCCGAACTTCTGGCTGATGGTGTTCAAGAACACGGAAGCGCTGGCCGAGCTGGTGCACCCGCACGACGAGCCGGTGCTGGAGTACCTGCGCAACCTGAACATCGTGTACGAGAAGGAGCCGATGTCGTACGTGATCGAGTTCCACTTCGACCCGAACCCGTACTTCAAGGACACGGTGCTGACGAAGAAGTACTTCCTGCG]




>consensus_401#0
CCGCCCACGCGTCCGCCCACGCGTCCGGGAAGCGGCCCAGCAGCGGGTGAACGCGCTGAA
GCATCTGCAGGTCGAGTACACCAAGCTGGAGGCGAAGTTCTTCGAAGAGGTGTACCAGCT
GGAGTGTAAATATCAGCAGCTCTACCAGCCGATCGTCGACCGGCGAAAGGAGATCGTGTC
CGGCAAGGCCGACCCGACGCCGGAGGAGGCGGCCTGGGTGGATCCACCGCGCAAGAAGGA
GGACGGCGAGGACGAGGAGGAGCAGGAGGAGGAGGACGACGAGATTAACGAGAAGCTGAA
GAAGATGGCGCTCAACTACCACAAGGAGCTGCCGGCGAACGGGCAGGGCATCCCGAACTT
CTGGCTGATGGTGTTCAAGAACACGGAAGCGCTGGCCGAGCTGGTGCACCCGCACGACGA
GCCGGTGCTGGAGTACCTGCGCAACCTGAACATCGTGTACGAGAAGGAGCCGATGTCGTA
CGTGATCGAGTTCCACTTCGACCCGAACCCGTACTTCAAGGACACGGTGCTGACGAAGAA
GTACTTCCTGCG

consensusID : consensus_401#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 149
fasta sequence

                              [CCGCCCACGCGTCCGCAAGATGTCGAACAACATTGCAATCCTCCTGCTGGCTGTTCTGGTTGCGGTGGTCGCTTGTGCATCAAGCACAACCATCCGGGCGGCATCACTTGGTCCATCCACTGCTGCCCAGATTCCTGCCTCAGCTTCAT]

[+] EMBL BM615070             [CCGCCCACGCGTCCGCAAGATGTCGAACAACATTGCAATCCTCCTGCTGGCTGTTCTGGTTGCGGTGGTCGCTTGTGCATCAAGCACAACCATCCGGGCGGCATCACTTGGTCCATCCACTGCTGCCCAGATTCCTGCCTCAGCTTCAT]




>consensus_401#1
CCGCCCACGCGTCCGCAAGATGTCGAACAACATTGCAATCCTCCTGCTGGCTGTTCTGGT
TGCGGTGGTCGCTTGTGCATCAAGCACAACCATCCGGGCGGCATCACTTGGTCCATCCAC
TGCTGCCCAGATTCCTGCCTCAGCTTCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_401#0      CCGCCCACGCGTCCGCCCACGCGTCCGGGAAGCGGCCCAGCAGCGGGTGAACGCGCTGAA 60
consensus_401#1      ------------------------------------------------------------
                                                                                 

consensus_401#0      GCATCTGCAGGTCGAGTACACCAAGCTGGAGGCGAAGTTCTTCGAAGAGGTGTACCAGCT 120
consensus_401#1      ------------------------------------------------------------
                                                                                 

consensus_401#0      GGAGTGTAAATATCAGCAGCTCTACCAGCCGATCGTCGACCGGCGAAAGGAGATCGTGTC 180
consensus_401#1      ------------------------------------------------------------
                                                                                 

consensus_401#0      CGGCAAGGCCGACCCGACGCCGGAGGAGGCGGCCTGGGTGGATCCACCGCGCAAGAAGGA 240
consensus_401#1      ------------------------------------------------------------
                                                                                 

consensus_401#0      GGACGGCGAGGACGAGGAGGAGCAGGAGGAGGAGGACGACGAGATTAACGAGAAGCTGAA 300
consensus_401#1      ------------------------------------------------------------
                                                                                 

consensus_401#0      GAAGATGGCGCTCAACTACCACAAGGAGCTGCCGGCGAACGGGCAGGGCATCCCGAACTT 360
consensus_401#1      ------------------------------------------------------------
                                                                                 

consensus_401#0      CTGGCTGATGGTGTTCAAGAACACGGAAG-CGCTGGCCGAGCTGGTGCACCCGCACGACG 419
consensus_401#1      ----------CCGCCCACGCGTCCGCAAGATGTCGAACAACAT--TGCAATCCTCCTGCT 48
                                 *  ** *    ** ***  *  *  * *  *  ****  *   *  * 

consensus_401#0      AGCCGGTGCTGGAGTACCTGCGCAACCTGAACATCGTGTACGAGAAGG-AGCCGATGTCG 478
consensus_401#1      GGCTGTT-CTGGT-TGCGGTGGTCGCTTGTGCATCAAGCACAACCATCCGGGCGGCATC- 105
                      ** * * ****  * *    *   * **  ****  * ** *  *    * **   ** 

consensus_401#0      TACGTGATCGAGTTCCACTTCGACCCGAACCCGTACTTCAAGGACACGGTGCTGACGAAG 538
consensus_401#1      -ACTTGGTCCA--TCCACTGCTGCCCAGATTCCTGCCTCAGCTTCAT------------- 149
                      ** ** ** *  ****** *  ***  *  * * * ***    **              

consensus_401#0      AAGTACTTCCTGCG 552
consensus_401#1      --------------