|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4012#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1185 fasta sequence
[GAGGTTATACCGTGGGCGGTGTTTACAAGTGCATTTGTTTATCACATGTAAAGTGTTGAAAACACGGGGCACGACCAATTGAAATGAGCACCACAAAGTGGNACGTTTCGTTGATGAAAACATCCACACGCCAAGCGCACGCTTGTGCAGTGTGTCAGTGCACATTTGGNCCGGGTGACGATAATACGTATAAAANCCGCGTGGTTCGCTATCTCAACAGCAACAAGNCGTNTATACGCAACAATATCGTACTATAATACCTACTACAATGGGAGACAATTTAGCATTNTTATAAAACGATATTTNTAGTNGTAGTTGCATAACTTNAAAATACTACCTCCGGATAGTAATTAANATAACTACACTCTATTATACGTAGATAGTATAATTGGGAGTNGGGGGTTAGGNGGTTACAACCACTGNCNTNGTNNAGACCCAGCGTACTATTAAAAGACTNGCGTAGTATAAAAAGTAAACGTTATTGTACCTCCTTGNGTNNGTGGTTNCCCGTAAGCAAACATCTAACAAGATTGAATATTGTATACTAGTATATCAGTATAATACAGGCTCTATTTTNGTCATAATATTTCTAGTCNTATAGATAATATCNGCNAATTNTCTAGTNTACTTGTNGTATTGTTTTCATCGNCAAAAGTACAACGGGTGCGCTTGTAGNTGTTTACCCCGGGGAAGNGTACAGACTCCCCCGGNTGTTAACATGTTCTNCAGTATGACCATACTCAACGGGCAACNAACAACAATTCTCTCGNCAANTAATNAGTGTCTACCCTTTANATGATATAACTAGACNGTANATCCNTATTAACGGATGANAAAANCAAGAAGTTGGCNATNAAAAGCGGTGGTAGAGANAATTCTAGCTNCACNCAAAAAACAACCCCGCCCCCAANAACTNAGANCTCATGGATGNCANNCCGCTTTGAGCCNANTNCCAACGNGTAANGAAGCAAAAAACCCCCGTNAGGATTNCTGCTGCGNCACNTGTTATCCACGGTTNTTCATAAACCTATTGGNTACGGACGAGCATCNATCATATCAAGTCTCAATGGGAGCGCNNATTATGGATGTACGACCAACAAAGGGACGGTGGTAGGAAATTACANCCACAACACAAAAAGTACCCGGGGCTAACTTAGAACNCAAAACAGGTTTGGCGATACCAAT]
[+] EMBL AL929801 [GAGGTTATACCGTGGGCGGTGTTTACAAGTGCATTTGTTTATCACATGTAAAGTGTTGAAAACACGGGGCACGACCAATTGAAATGAGCACCACAAAGTGGNACGTTTCGTTGATGAAAACATCCACACGCCAAGCGCACGCTTGTGCAGTGTGTCAGTGCACATTTGGNCCGGGTGACGATAATACGTATAAAANCCGCGTGGTTCGCTATCTCAACAGCAACAAGNCGTNTATACGCAACAATATCGTACTATAATACCTACTACAATGGGAGACAATTTAGCATTNTTATAAAACGATATTTNTAGTNGTAGTTGCATAACTTNAAAATACTACCTCCGGATAGTAATTAANATAACTACACTCTATTATACGTAGATAGTATAATTGGGAGTNGGGGGTTAGGNGGTTACAACCACTGNCNTNGTNNAGACCCAGCGTACTATTAAAAGACTNGCGTAGTATAAAAAGTAAACGTTATTGTACCTCCTTGNGTNNGTGGTTNCCCGTAAGCAAACATCTAACAAGATTGAATATTGTATACTAGTATATCAGTATAATACAGGCTCTATTTTNGTCATAATATTTCTAGTCNTATAGATAATATCNGCNAATTNTCTAGTNTACTTGTNGTATTGTTTTCATCGNCAAAAGTACAACGGGTGCGCTTGTAGNTGTTTACCCCGGGGAAGNGTACAGACTCCCCCGGNTGTTAACATGTTCTNCAGTATGACCATACTCAACGGGCAACNAACAACAATTCTCTCGNCAANTAATNAGTGTCTACCCTTTANATGATATAACTAGACNGTANATCCNTATTAACGGATGANAAAANCAAGAAGTTGGCNATNAAAAGCGGTGGTAGAGANAATTCTAGCTNCACNCAAAAAACAACCCCGCCCCCAANAACTNAGANCTCATGGATGNCANNCCGCTTTGAGCCNANTNCCAACGNGTAANGAAGCAAAAAACCCCCGTNAGGATTNCTGCTGCGNCACNTGTTATCCACGGTTNTTCATAAACCTATTGGNTACGGACGAGCATCNATCATATCAAGTCTCAATGGGAGCGCNNATTATGGATGTACGACCAACAAAGGGACGGTGGTAGGAAATTACANCCACAACACAAAAAGTACCCGGGGCTAACTTAGAACNCAAAACAGGTTTGGCGATACCAAT]
consensusID : consensus_4012#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 542 fasta sequence
[AATGGTTTAACAATTGTATATTGTAGCGTATTGATTGCAACCGTGGCCGCTGTTTANAAGTGCAATTTGTTTCATCACATGTAAAGTGTTGAAAACACGGGGCACGACCAATTGAAATGAGCACAAAAAGTGGAACGTTTCGTTGATGAAAACATCCACACGCCAAGCGCACGCTTGTGCAGTGTGTCAGTGCAATTTGGAAAGGGTGAGATAATCGTTTTACCGCGTGTTCGCTTCTCAAAGCAATGCGTTTATCCACCAATTCGTACTATTATCCTCTTTGGAGACAATTAGCTTTTATAAACGATTTTTAGTGTGTGCATACTTAAATCTCCTCGATGTTT-TTATTCTCACTCTTTATCGTGTGTTTTGGGTGGGTGGGTACACCCGCTGCGCCCGCTCTTTAAAGACTGCTGTTTTGTTTCGTTTGTCCTCTGGGGGGTTCCGTAGCAACTCTACAGA-TG-ATGATTGTTACTGTTTGTTAATCGCTTTTTTTCGTATATTATCTGNTCTATGTACNNTNAGCATTNCTGGTTNTCTGT]
[+] EMBL BX627013 [AATGGTTTAACAATTGTATATTGTAGCGTATTGATTGCAACCGTGGCCGCTGTTTANAAGTGCAATTTGTTTCATCACATGTAAAGTGTTGAAAACACGGGGCACGACCAATTGAAATGAGCACAAAAAGTGGAACGTTTCGTTGATGAAAACATCCACACGCCAAGCGCACGCTTGTGCAGTGTGTCAGTGCAATTTGGAAAGGGTGAGATAATCGTTTTACCGCGTGTTCGCTTCTCAAAGCAATGCGTTTATCCACCAATTCGTACTATTATCCTCTTTGGAGACAATTAGCTTTTATAAACGATTTTTAGTGTGTGCATACTTAAATCTCCTCGATGTTT TTATTCTCACTCTTTATCGTGTGTTTTGGGTGGGTGGGTACACCCGCTGCGCCCGCTCTTTAAAGACTGCTGTTTTGTTTCGTTTGTCCTCTGGGGGGTTCCGTAGCAACTCTACAGA TG ATGATTGTTACTGTTTGTTAATCGCTTTTT ]
[+] EMBL AL933753 [ cgaggaTGC ACCGTGGCCGCTGTTTAGAAGTGCAATTTGTTTCATCACATGTAAAGTGTTGAAAACACGGGGCACGACCAATTGAAATGAGCACAAAAAGTGGAACGTTTCGTTGATGAAAACATCCACACGCCAAGCGCACGCTTGTGCAGTGTGTCAGTGCAATTTGGAAAGGGTGAGATAATCGTTTTACCGCGTGTTCGCTTCTCAAAGCAATGCGTTTATCCACCAATTCGTACTATTATCCTCTTTGGAGACAATTAGCTTTTATAAACGATTTTTAGTGTGTGCATACTTAAATCTCCTCGATGTTTATTATTCTCACTCTTTATCGTGTGTTTTGGGTGGGTGGGTACACCCGCTGCGCCCGCTCTTTAAAGACTGCTGTTTTGTTTCGTTTGTCCTCTGGGGGGTTCCGTAGCAACTCTACAGACTGCATGATTGTTACTGTTTGTTAATCGCTTCTTTTCGTATATTATCTGNTCTATGTACNNTNAGCATTNCTGGTTNTCTGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4012#0 ------------------------------GAGGTTATA-CCGTGGGCGGTGTTTACAAG 29
consensus_4012#1 AATGGTTTAACAATTGTATATTGTAGCGTATTGATTGCAACCGTGGCCGCTGTTTANAAG 60
* ** * ****** ** ****** ***
consensus_4012#0 TGCA-TTTGTTT-ATCACATGTAAAGTGTTGAAAACACGGGGCACGACCAATTGAAATGA 87
consensus_4012#1 TGCAATTTGTTTCATCACATGTAAAGTGTTGAAAACACGGGGCACGACCAATTGAAATGA 120
**** ******* ***********************************************
consensus_4012#0 GCACCACAAAGTGGNACGTTTCGTTGATGAAAACATCCACACGCCAAGCGCACGCTTGTG 147
consensus_4012#1 GCAC-AAAAAGTGGAACGTTTCGTTGATGAAAACATCCACACGCCAAGCGCACGCTTGTG 179
**** * ******* *********************************************
consensus_4012#0 CAGTGTGTCAGTGCACATTTGGNCCGGGTGACGATAATACGTATAAAANCCGCGTGGTTC 207
consensus_4012#1 CAGTGTGTCAGTGCA-ATTTGGAAAGGGTGA-GATAAT-CGTTT---TACCGCGTG-TTC 232
*************** ****** ****** ****** *** * ******* ***
consensus_4012#0 GCTATCTCAACAGCAACAAGNCGTNTATACGCAACAATATCGTACTATAATACCTACTAC 267
consensus_4012#1 GCT-TCTCAA----AGCAATGCGTTTATCCAC--CAAT-TCGTACTATTATCCTCTTT-- 282
*** ****** * *** *** *** * * **** ********* ** * *
consensus_4012#0 AATGGGAGACAATTTAGCATTNTTATAAAACGATATTTNTAGTNGTAGTTGCATAACTTN 327
consensus_4012#1 ----GGAGACAATT-AGC--TTTTATAAA-CGATTTTTAGTGTG-----TGCATA-CTTA 328
********** *** * ******* **** *** ** ****** ***
consensus_4012#0 AAAATACTACCTCCGGATAGTAATTAANATAACTACACTCTATTATACGTAGATAGTATA 387
consensus_4012#1 AAT------CTCCTCGATG----TTTTTATTCTCACTCTTTATCGTGTGT---------- 368
** * * *** ** ** ** ** *** * **
consensus_4012#0 ATTGGGAGTNGGGGGTTAGGNGGTTACAACCACTGNCNTNGTNNAGACCCAGCGTACTAT 447
consensus_4012#1 TTTGGG----------TGGGTGGGTACACCCGCTGCGCCCGCTC---------------T 403
***** * ** ** **** ** *** * *
consensus_4012#0 TAAAAGACTNGCGTAGTATAAAAAGTAAACGTTATTGTACCTCCTTGNGTNNGTGGTTNC 507
consensus_4012#1 TTAAAGACTGCTGTTTTGT------------TTCGTTTGTCCTCTGGGGGGTTCCGTAGC 451
* ******* ** * * ** * * * ** * * ** *
consensus_4012#0 CCGTAAGCAAACATCTAACAAGATTGAATATTGTATACTAGTATATCAGTATAATACAGG 567
consensus_4012#1 AACTCTACAGATGATGATTGTTACTGTTTGTTAATCGCT--TTTTTTCGTATATTATCTG 509
* ** * * * ** * ** ** * * * ***** ** *
consensus_4012#0 CTCTATTTTNGTCATAATATTTCTAGTCNTATAGATAATATCNGCNAATTNTCTAGTNTA 627
consensus_4012#1 NTCTATGTACNNTN-AGCATTNCTGGTTNTCTGT-------------------------- 542
***** * * *** ** ** ** *
consensus_4012#0 CTTGTNGTATTGTTTTCATCGNCAAAAGTACAACGGGTGCGCTTGTAGNTGTTTACCCCG 687
consensus_4012#1 ------------------------------------------------------------
consensus_4012#0 GGGAAGNGTACAGACTCCCCCGGNTGTTAACATGTTCTNCAGTATGACCATACTCAACGG 747
consensus_4012#1 ------------------------------------------------------------
consensus_4012#0 GCAACNAACAACAATTCTCTCGNCAANTAATNAGTGTCTACCCTTTANATGATATAACTA 807
consensus_4012#1 ------------------------------------------------------------
consensus_4012#0 GACNGTANATCCNTATTAACGGATGANAAAANCAAGAAGTTGGCNATNAAAAGCGGTGGT 867
consensus_4012#1 ------------------------------------------------------------
consensus_4012#0 AGAGANAATTCTAGCTNCACNCAAAAAACAACCCCGCCCCCAANAACTNAGANCTCATGG 927
consensus_4012#1 ------------------------------------------------------------
consensus_4012#0 ATGNCANNCCGCTTTGAGCCNANTNCCAACGNGTAANGAAGCAAAAAACCCCCGTNAGGA 987
consensus_4012#1 ------------------------------------------------------------
consensus_4012#0 TTNCTGCTGCGNCACNTGTTATCCACGGTTNTTCATAAACCTATTGGNTACGGACGAGCA 1047
consensus_4012#1 ------------------------------------------------------------
consensus_4012#0 TCNATCATATCAAGTCTCAATGGGAGCGCNNATTATGGATGTACGACCAACAAAGGGACG 1107
consensus_4012#1 ------------------------------------------------------------
consensus_4012#0 GTGGTAGGAAATTACANCCACAACACAAAAAGTACCCGGGGCTAACTTAGAACNCAAAAC 1167
consensus_4012#1 ------------------------------------------------------------
consensus_4012#0 AGGTTTGGCGATACCAAT 1185
consensus_4012#1 ------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||