cluster # 4016

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Anopheles gambiae
cluster # 4016 cluster # 4016 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4016#0 length = 656 sequences # 1

consensus_4016#1 length = 602 sequences # 1
consensus_4016#2 length = 547 sequences # 1

consensusID : consensus_4016#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 656
fasta sequence

                              [CCGCGGACGCGTGGGGTTCGGGGACGGCGTCGCGGCCGACTATCTGCTCTGCCATCTCGTCTCGTCCGTGTACATCCGGGACGAGGTAGAGTGTAGGGGCCAGTTTTGCCTGAATCTAAGCAACATCCCGGCGGAAGTGCTGCCCGGCTACACGCGCTCGCTGTACGAGCTGCTCGAGCTGCTGCTTCCCGCCAGCCACTATCTGCCGATGACGCTCGACAACATGAACACGCTACAGTTTGCGCCCAAAAAAGACTACAAAACGAACAAGCTCACGAGCGGCATCTTGCAGCTGGCGCCCCACACTCATCTGGTGCTGGGCGAGACGCGGCTGGAGGCGGGCAAACTGGAATCCGCAGGCGTCGAGGCGGTCAAGCACGTGGCGCACCTAATTAAGGCCCAGCGGCTCAAGTACGACTTTCAGTTCTATCAGCTCGATTTCAACACCGACGTACCGGTGCTGGTGCTAAGCGAGGGGAAAAGCATGCTACCGAGCAACTGCTACCTGCCGATCGTACCGGACCTGGACGCGATCAAGCTGATCGACGAAACGATCAAAGCCGGCCGGCACTACGTCGCCCCGGAAGCTGGACGGTATGCGCCGCTTCCTCACCTGTGCCCGGGTGCGCCCGTTCGACATGAAAACACTCGACCCG]

[+] EMBL BM583086             [CCGCGGACGCGTGGGGTTCGGGGACGGCGTCGCGGCCGACTATCTGCTCTGCCATCTCGTCTCGTCCGTGTACATCCGGGACGAGGTAGAGTGTAGGGGCCAGTTTTGCCTGAATCTAAGCAACATCCCGGCGGAAGTGCTGCCCGGCTACACGCGCTCGCTGTACGAGCTGCTCGAGCTGCTGCTTCCCGCCAGCCACTATCTGCCGATGACGCTCGACAACATGAACACGCTACAGTTTGCGCCCAAAAAAGACTACAAAACGAACAAGCTCACGAGCGGCATCTTGCAGCTGGCGCCCCACACTCATCTGGTGCTGGGCGAGACGCGGCTGGAGGCGGGCAAACTGGAATCCGCAGGCGTCGAGGCGGTCAAGCACGTGGCGCACCTAATTAAGGCCCAGCGGCTCAAGTACGACTTTCAGTTCTATCAGCTCGATTTCAACACCGACGTACCGGTGCTGGTGCTAAGCGAGGGGAAAAGCATGCTACCGAGCAACTGCTACCTGCCGATCGTACCGGACCTGGACGCGATCAAGCTGATCGACGAAACGATCAAAGCCGGCCGGCACTACGTCGCCCCGGAAGCTGGACGGTATGCGCCGCTTCCTCACCTGTGCCCGGGTGCGCCCGTTCGACATGAAAACACTCGACCCG]




>consensus_4016#0
CCGCGGACGCGTGGGGTTCGGGGACGGCGTCGCGGCCGACTATCTGCTCTGCCATCTCGT
CTCGTCCGTGTACATCCGGGACGAGGTAGAGTGTAGGGGCCAGTTTTGCCTGAATCTAAG
CAACATCCCGGCGGAAGTGCTGCCCGGCTACACGCGCTCGCTGTACGAGCTGCTCGAGCT
GCTGCTTCCCGCCAGCCACTATCTGCCGATGACGCTCGACAACATGAACACGCTACAGTT
TGCGCCCAAAAAAGACTACAAAACGAACAAGCTCACGAGCGGCATCTTGCAGCTGGCGCC
CCACACTCATCTGGTGCTGGGCGAGACGCGGCTGGAGGCGGGCAAACTGGAATCCGCAGG
CGTCGAGGCGGTCAAGCACGTGGCGCACCTAATTAAGGCCCAGCGGCTCAAGTACGACTT
TCAGTTCTATCAGCTCGATTTCAACACCGACGTACCGGTGCTGGTGCTAAGCGAGGGGAA
AAGCATGCTACCGAGCAACTGCTACCTGCCGATCGTACCGGACCTGGACGCGATCAAGCT
GATCGACGAAACGATCAAAGCCGGCCGGCACTACGTCGCCCCGGAAGCTGGACGGTATGC
GCCGCTTCCTCACCTGTGCCCGGGTGCGCCCGTTCGACATGAAAACACTCGACCCG

consensusID : consensus_4016#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 602
fasta sequence

                              [CCGGTCTGGACGAGTTCGTGGACGACGTGTCCGAGCATCAGGCAACGCATCCACCGCCGTCGTTGATACCGCGCCTGCACGCCGTCAGTGTGCGGAAGCTGCCCCACACGAATCCGCTGCTACTGCGGGGACCGCCGAGCAGTGACGCCTGCCTGGATGCGCTCGCCGAAACGACGTACAAGGACCTGCACAACCTGCTCACCCAGTGCCTGGTTCGGGGACGGCGTCGCGGCCGACTATCTGCTCTGCCATCTCGTCTCGTCCGTGTACATCCGGGACGAGGTAGAGTGTAGGGGACAGTTTTGCCTGAACCTCAGCAACATCCCGGCGGAAGTGCTGCCCGGCTACACGCGCTCGCTGTACGAGCTGCTCGAGCTGCTGCTTCCCGCCAGCCACTATCTGCCGATGACGCTCGACAACATGAACACGTTACAGTTTGCGCCCAAAAAAGACTACAAAACGAACAAGCTCACGAGCGGCATCTTGCAGCTGGCGCCCCACACCCATTCTGGTGCTGGACGAGACGCGGCTGGAGGCGGGCAAACTGGAATCCGCAGGCGTCGAGGCGGTCAAGCACGTGGCGCACCTAATTAAGGGCCAGC]

[+] EMBL BM589640             [CCGGTCTGGACGAGTTCGTGGACGACGTGTCCGAGCATCAGGCAACGCATCCACCGCCGTCGTTGATACCGCGCCTGCACGCCGTCAGTGTGCGGAAGCTGCCCCACACGAATCCGCTGCTACTGCGGGGACCGCCGAGCAGTGACGCCTGCCTGGATGCGCTCGCCGAAACGACGTACAAGGACCTGCACAACCTGCTCACCCAGTGCCTGGTTCGGGGACGGCGTCGCGGCCGACTATCTGCTCTGCCATCTCGTCTCGTCCGTGTACATCCGGGACGAGGTAGAGTGTAGGGGACAGTTTTGCCTGAACCTCAGCAACATCCCGGCGGAAGTGCTGCCCGGCTACACGCGCTCGCTGTACGAGCTGCTCGAGCTGCTGCTTCCCGCCAGCCACTATCTGCCGATGACGCTCGACAACATGAACACGTTACAGTTTGCGCCCAAAAAAGACTACAAAACGAACAAGCTCACGAGCGGCATCTTGCAGCTGGCGCCCCACACCCATTCTGGTGCTGGACGAGACGCGGCTGGAGGCGGGCAAACTGGAATCCGCAGGCGTCGAGGCGGTCAAGCACGTGGCGCACCTAATTAAGGGCCAGC]




>consensus_4016#1
CCGGTCTGGACGAGTTCGTGGACGACGTGTCCGAGCATCAGGCAACGCATCCACCGCCGT
CGTTGATACCGCGCCTGCACGCCGTCAGTGTGCGGAAGCTGCCCCACACGAATCCGCTGC
TACTGCGGGGACCGCCGAGCAGTGACGCCTGCCTGGATGCGCTCGCCGAAACGACGTACA
AGGACCTGCACAACCTGCTCACCCAGTGCCTGGTTCGGGGACGGCGTCGCGGCCGACTAT
CTGCTCTGCCATCTCGTCTCGTCCGTGTACATCCGGGACGAGGTAGAGTGTAGGGGACAG
TTTTGCCTGAACCTCAGCAACATCCCGGCGGAAGTGCTGCCCGGCTACACGCGCTCGCTG
TACGAGCTGCTCGAGCTGCTGCTTCCCGCCAGCCACTATCTGCCGATGACGCTCGACAAC
ATGAACACGTTACAGTTTGCGCCCAAAAAAGACTACAAAACGAACAAGCTCACGAGCGGC
ATCTTGCAGCTGGCGCCCCACACCCATTCTGGTGCTGGACGAGACGCGGCTGGAGGCGGG
CAAACTGGAATCCGCAGGCGTCGAGGCGGTCAAGCACGTGGCGCACCTAATTAAGGGCCA
GC

consensusID : consensus_4016#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 547
fasta sequence

                              [CACGCCGTCAGTGTGCGGAAGCTACCCCACACGAACCCACTGCTACTGCGGGGACCGCCGAGCAGTGACGCCTGCGCCGAAACAACGTACAAGGACCTGCACAACCTGCTCACCCAGTGCCTGTTCGGGGACGGCGTCGCAGCCGACTATCTGCTCTGCCATCTCGTCTCGTCCGTGTACATCCGGGACGAGGTAGAGTGTAGGGGACAGTTTTGCCTGAACCTCAGCAACATCCCGGCGGAAGTGCTGCCCGGCTACACGCGCTCGCTGTACGAGCTGCTCGAGCTGCTGCTTCCCGCCAGCCACTATCTGCCGATGACGCTCGACAACATGAACACGCTACAGTTTGCGCCCAAAAAAGACTACAAAACGAACAAGCTTACGAGCGGCATCTTGCAGCTGGCGCCCCACACCCACCTGGTGCTGGACGAGACGCGGCTAGAGGCGGGCAAACTGGAATCCGCAGGCGTCGAGGCGGTCAAGCACGTGGCGCACCTAATTAAGGCCCAGCGGCTCAAGTACGACTTTCAGTTCTATCAGCTCGATT]

[+] EMBL BX606115             [CACGCCGTCAGTGTGCGGAAGCTACCCCACACGAACCCACTGCTACTGCGGGGACCGCCGAGCAGTGACGCCTGCGCCGAAACAACGTACAAGGACCTGCACAACCTGCTCACCCAGTGCCTGTTCGGGGACGGCGTCGCAGCCGACTATCTGCTCTGCCATCTCGTCTCGTCCGTGTACATCCGGGACGAGGTAGAGTGTAGGGGACAGTTTTGCCTGAACCTCAGCAACATCCCGGCGGAAGTGCTGCCCGGCTACACGCGCTCGCTGTACGAGCTGCTCGAGCTGCTGCTTCCCGCCAGCCACTATCTGCCGATGACGCTCGACAACATGAACACGCTACAGTTTGCGCCCAAAAAAGACTACAAAACGAACAAGCTTACGAGCGGCATCTTGCAGCTGGCGCCCCACACCCACCTGGTGCTGGACGAGACGCGGCTAGAGGCGGGCAAACTGGAATCCGCAGGCGTCGAGGCGGTCAAGCACGTGGCGCACCTAATTAAGGCCCAGCGGCTCAAGTACGACTTTCAGTTCTATCAGCTCGATT]




>consensus_4016#2
CACGCCGTCAGTGTGCGGAAGCTACCCCACACGAACCCACTGCTACTGCGGGGACCGCCG
AGCAGTGACGCCTGCGCCGAAACAACGTACAAGGACCTGCACAACCTGCTCACCCAGTGC
CTGTTCGGGGACGGCGTCGCAGCCGACTATCTGCTCTGCCATCTCGTCTCGTCCGTGTAC
ATCCGGGACGAGGTAGAGTGTAGGGGACAGTTTTGCCTGAACCTCAGCAACATCCCGGCG
GAAGTGCTGCCCGGCTACACGCGCTCGCTGTACGAGCTGCTCGAGCTGCTGCTTCCCGCC
AGCCACTATCTGCCGATGACGCTCGACAACATGAACACGCTACAGTTTGCGCCCAAAAAA
GACTACAAAACGAACAAGCTTACGAGCGGCATCTTGCAGCTGGCGCCCCACACCCACCTG
GTGCTGGACGAGACGCGGCTAGAGGCGGGCAAACTGGAATCCGCAGGCGTCGAGGCGGTC
AAGCACGTGGCGCACCTAATTAAGGCCCAGCGGCTCAAGTACGACTTTCAGTTCTATCAG
CTCGATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4016#1      CCGGTCTGGACGAGTTCGTGGACGACGTGTCCGAGCATCAGGCAACGCATCCACCGCCGT 60
consensus_4016#2      ------------------------------------------------------------
consensus_4016#0      ------------------------------------------------------------
                                                                                  

consensus_4016#1      CGTTGATACCGCGCCTGCACGCCGTCAGTGTGCGGAAGCTGCCCCACACGAATCCGCTGC 120
consensus_4016#2      -----------------CACGCCGTCAGTGTGCGGAAGCTACCCCACACGAACCCACTGC 43
consensus_4016#0      ------------------------------------------------------------
                                                                                  

consensus_4016#1      TACTGCGGGGACCGCCGAGCAGTGACGCCTGCCTGGATGCGCTCGCCGAAACGACGTACA 180
consensus_4016#2      TACTGCGGGGACCGCCGAGCAGTGACGCCTGC------------GCCGAAACAACGTACA 91
consensus_4016#0      ------------------------------------------------------------
                                                                                  

consensus_4016#1      AGGACCTGCACAACCTGCTCACCCAGTGCCTGGTTCGGGGACGGCGTCGCGGCCGACTAT 240
consensus_4016#2      AGGACCTGCACAACCTGCTCACCCAGTGCCTG-TTCGGGGACGGCGTCGCAGCCGACTAT 150
consensus_4016#0      --------------CCGCGGAC---GCGTGGGGTTCGGGGACGGCGTCGCGGCCGACTAT 43
                                    * **  **   * *   * ***************** *********

consensus_4016#1      CTGCTCTGCCATCTCGTCTCGTCCGTGTACATCCGGGACGAGGTAGAGTGTAGGGGACAG 300
consensus_4016#2      CTGCTCTGCCATCTCGTCTCGTCCGTGTACATCCGGGACGAGGTAGAGTGTAGGGGACAG 210
consensus_4016#0      CTGCTCTGCCATCTCGTCTCGTCCGTGTACATCCGGGACGAGGTAGAGTGTAGGGGCCAG 103
                      ******************************************************** ***

consensus_4016#1      TTTTGCCTGAACCTCAGCAACATCCCGGCGGAAGTGCTGCCCGGCTACACGCGCTCGCTG 360
consensus_4016#2      TTTTGCCTGAACCTCAGCAACATCCCGGCGGAAGTGCTGCCCGGCTACACGCGCTCGCTG 270
consensus_4016#0      TTTTGCCTGAATCTAAGCAACATCCCGGCGGAAGTGCTGCCCGGCTACACGCGCTCGCTG 163
                      *********** ** *********************************************

consensus_4016#1      TACGAGCTGCTCGAGCTGCTGCTTCCCGCCAGCCACTATCTGCCGATGACGCTCGACAAC 420
consensus_4016#2      TACGAGCTGCTCGAGCTGCTGCTTCCCGCCAGCCACTATCTGCCGATGACGCTCGACAAC 330
consensus_4016#0      TACGAGCTGCTCGAGCTGCTGCTTCCCGCCAGCCACTATCTGCCGATGACGCTCGACAAC 223
                      ************************************************************

consensus_4016#1      ATGAACACGTTACAGTTTGCGCCCAAAAAAGACTACAAAACGAACAAGCTCACGAGCGGC 480
consensus_4016#2      ATGAACACGCTACAGTTTGCGCCCAAAAAAGACTACAAAACGAACAAGCTTACGAGCGGC 390
consensus_4016#0      ATGAACACGCTACAGTTTGCGCCCAAAAAAGACTACAAAACGAACAAGCTCACGAGCGGC 283
                      ********* **************************************** *********

consensus_4016#1      ATCTTGCAGCTGGCGCCCCACACCCATTCTGGTGCTGGACGAGACGCGGCTGGAGGCGGG 540
consensus_4016#2      ATCTTGCAGCTGGCGCCCCACACCCAC-CTGGTGCTGGACGAGACGCGGCTAGAGGCGGG 449
consensus_4016#0      ATCTTGCAGCTGGCGCCCCACACTCAT-CTGGTGCTGGGCGAGACGCGGCTGGAGGCGGG 342
                      *********************** **  ********** ************ ********

consensus_4016#1      CAAACTGGAATCCGCAGGCGTCGAGGCGGTCAAGCACGTGGCGCACCTAATTAAGGGCCA 600
consensus_4016#2      CAAACTGGAATCCGCAGGCGTCGAGGCGGTCAAGCACGTGGCGCACCTAATTAAGGCCCA 509
consensus_4016#0      CAAACTGGAATCCGCAGGCGTCGAGGCGGTCAAGCACGTGGCGCACCTAATTAAGGCCCA 402
                      ******************************************************** ***

consensus_4016#1      GC---------------------------------------------------------- 602
consensus_4016#2      GCGGCTCAAGTACGACTTTCAGTTCTATCAGCTCGATT---------------------- 547
consensus_4016#0      GCGGCTCAAGTACGACTTTCAGTTCTATCAGCTCGATTTCAACACCGACGTACCGGTGCT 462
                      **                                                          

consensus_4016#1      ------------------------------------------------------------
consensus_4016#2      ------------------------------------------------------------
consensus_4016#0      GGTGCTAAGCGAGGGGAAAAGCATGCTACCGAGCAACTGCTACCTGCCGATCGTACCGGA 522
                                                                                  

consensus_4016#1      ------------------------------------------------------------
consensus_4016#2      ------------------------------------------------------------
consensus_4016#0      CCTGGACGCGATCAAGCTGATCGACGAAACGATCAAAGCCGGCCGGCACTACGTCGCCCC 582
                                                                                  

consensus_4016#1      ------------------------------------------------------------
consensus_4016#2      ------------------------------------------------------------
consensus_4016#0      GGAAGCTGGACGGTATGCGCCGCTTCCTCACCTGTGCCCGGGTGCGCCCGTTCGACATGA 642
                                                                                  

consensus_4016#1      --------------
consensus_4016#2      --------------
consensus_4016#0      AAACACTCGACCCG 656