cluster # 4025

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Anopheles gambiae
cluster # 4025 cluster # 4025 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4025#0 length = 808 sequences # 2

consensus_4025#1 length = 481 sequences # 1

consensusID : consensus_4025#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 808
fasta sequence

                              [AGAGATTTATTACACTAGGAGAAAAAGGAGGACATGTTCTAATACTCACACTGCACACACACAAGAAACGCCATATAGATATATATTTGAGGGTGCCAGATTTACACCGTTCGATCGACCATTGTTTGATAAATTCATACGTGCCTTGCTGTTGTAGTGGAAGCGGAAC----CCGAGCAAAAAGAGAACAAAAAAAGCAACAACCCTCCCCGACCAGACAGTTGCAGTTGCGTCAAGTTCGAAACTCACCCCGGAAACAGTGAGCATTCACAACGGATGGGGGGACACAGCGGGGATGAACA-GGGCTGCTGGCGGAATATAGTGCGAAGGGACGAGGGTTTTGTGAAGCTTTTACTCCTTCAACTTTCTCGTGTCGTGTTGTTGTTGTTGTTGTTGTGCACAGCCCAATCTGCGCGGGTGTTTTTTGTATTTCCTCTTTGCGTTGCAACCTAACGATACGATGCACAACCGTTTTTTCACTCCCGTACACACTCTCACACACACACACTCCAAAACACAGTCACC-AAATATCCGGTTTTTTGCACCACTCACTGTTAGGGAACGAACGCGAAGAGGCAGAAACTAAACCTACAAACAAGAGAGATAAGAATTATTGTAAAAAAAACATTGCAAAAACCAAACGAAGAAGCGGATTAATTAATGTAACTTTACCCCGTANTAGTGCGCCGGGAGAGAGAGAGGAACTGGAGAAAGAGAGTAAGATTATAATTACTATTTACCACAACAGCATCCCCCTGGCGAACGTAAGAAAAAAAGTTGAAACAAACTCTTAAACATTTACACGTCCAAA]

[+] EMBL BX627599             [AGAGATTTATTACACTAGGAGAAAAAGGAGGACATGTTCTAATACTCACACTGCACACACACAAGAAACGCCATATAGATATATATTTGAGGGTGCCAGATTTACACCGTTCGATCGACCATTGTTTGATAAATTCATACGTGCCTTGCTGTTGTAGTGGAAGCGGAAC    CCGAGCAAAAAGAGAACAAAAAAAGCAACAACCCTCCCCGACCAGACAGTTGCAGTTGCGTCAAGTTCGAAACTCACCCCGGAAACAGTGAGCATTCACAACGGATGGGGGGACACAGCGGGGATGAACA GGGCTGCTGGCGGAATATAGTGCGAAGGGACGAGGGTTTTGTGAAGCTTTTACTCCTTCAACTTTCTCGTGTCGTGTTGTTGTTGTTGTTGTTGTGCACAGCCCAATCTGCGCGGGTGTTTTTTGTATTTCCTCTTTGCGTTGCAACCTAACGATACGATGCACAACCGTTTTTTCACTCCCGTACACACTCTCACACACACACACTCCAAAACACAGTCACC AAATATCCGGTTTTTTGCACCACTCACTGTTAGGGAACGAACGCGAAGAGGCAGAAACTAAACCTACAAACAAGAGAGATAAGAATTATTGTAAAAAAAACATTGCAAAAACCAAACGAAGAAGCGGATTAATTAATGTAACTTTACCCCGTANTAGTG                                                                                                                               ]
[+] EMBL BX468124             [                                                                                                                                                           gcaaGAATCGGCACGTGGCCGAGC AAAAGAGAACAAAAAAAGCAACAACCCTCCCCGACCAGACAGTTGCAGTTGCGTCAAGTTCGAAACTCACCCCGGAAACAGTGAGCATTCACAACGGATGGGGGGACACAGCGGGGATGAACAGGGGCTGCTGGCGGAATATAGTGCGAAGGGACGAGGGTTTTGTGAAGCTTTTACTCCTTCAACTTTCTCGTGTCGTGTTGTTGTTGTTGTTGCTGTGCACAGCCCAATCTGCGCGGGTGTTTTTTGTATTTCCTCTTTGCGTTGCAACCTAACGATACGATGCACAACCGTTTTTTCACTCCCGTACACACTCTCACACACACACACTCCAAAACACAGTCACCAAAATATCCGGTTTTTTGCACCACTCACTGTTAGGGAACGAACGCGAAGAGGCAGAAACTAAACCTACAAACAAGAGAGATAAGAATTATTGTAAAAAAAACATTGCAAAAACCAAACGAAGAAGCGGATTAATTAATGTAACTTTACCCCGTTATAGTGCGCCGGGAGAGAGAGAGGAACTGGAGAAAGAGAGTAAGATTATAATTACTATTTACCACAACAGCATCCCCCTGGCGAACGTAAGAAAAAAAGTTGAAACAAACTCTTAAACATTTACACGTCCAAA]




>consensus_4025#0
AGAGATTTATTACACTAGGAGAAAAAGGAGGACATGTTCTAATACTCACACTGCACACAC
ACAAGAAACGCCATATAGATATATATTTGAGGGTGCCAGATTTACACCGTTCGATCGACC
ATTGTTTGATAAATTCATACGTGCCTTGCTGTTGTAGTGGAAGCGGAACCCGAGCAAAAA
GAGAACAAAAAAAGCAACAACCCTCCCCGACCAGACAGTTGCAGTTGCGTCAAGTTCGAA
ACTCACCCCGGAAACAGTGAGCATTCACAACGGATGGGGGGACACAGCGGGGATGAACAG
GGCTGCTGGCGGAATATAGTGCGAAGGGACGAGGGTTTTGTGAAGCTTTTACTCCTTCAA
CTTTCTCGTGTCGTGTTGTTGTTGTTGTTGTTGTGCACAGCCCAATCTGCGCGGGTGTTT
TTTGTATTTCCTCTTTGCGTTGCAACCTAACGATACGATGCACAACCGTTTTTTCACTCC
CGTACACACTCTCACACACACACACTCCAAAACACAGTCACCAAATATCCGGTTTTTTGC
ACCACTCACTGTTAGGGAACGAACGCGAAGAGGCAGAAACTAAACCTACAAACAAGAGAG
ATAAGAATTATTGTAAAAAAAACATTGCAAAAACCAAACGAAGAAGCGGATTAATTAATG
TAACTTTACCCCGTANTAGTGCGCCGGGAGAGAGAGAGGAACTGGAGAAAGAGAGTAAGA
TTATAATTACTATTTACCACAACAGCATCCCCCTGGCGAACGTAAGAAAAAAAGTTGAAA
CAAACTCTTAAACATTTACACGTCCAAA

consensusID : consensus_4025#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 481
fasta sequence

                              [ATCGATTTCTCTAGGAGAAAAAGGAGGAAATGTTCTAATACTCACACTGCACACACACAAGAAACGCCATATAGATATATATTTGAGGGTGCCAGATTTACACCGTTCGATCGACCATTGTTTGATAAATTCATACGTGCCTTGCTGTTGTAGTGGAAGCGGAACCCGAGCAAAAAGAGAACAAAAAAAGCAACAACCCTCCCCGACCAGACAGTTGCAGTTGCGTCAAGTTCGAAACTCGCCCCGGAAACAGTGGACAGCGCTGCTGGCGGGATATAGTGCGAAGGGACGAGGGTTTTGTGAAGCTTTTACTCCTTCAACTTTCTCGTGTCGTGTTGTTGTTGTTGTTGTTGTGCACAGCCCAATCTGCGCGGGTGTTTTTGTATTTCCTCTTCGCGTTGCAACCTAACGATACGATGCACAACCGTTTTTTCACTCCCGCAGATACTAGATAGATGGATTAGCTCAATGGACAGCGTAG]

[+] EMBL BX620163             [ATCGATTTCTCTAGGAGAAAAAGGAGGAAATGTTCTAATACTCACACTGCACACACACAAGAAACGCCATATAGATATATATTTGAGGGTGCCAGATTTACACCGTTCGATCGACCATTGTTTGATAAATTCATACGTGCCTTGCTGTTGTAGTGGAAGCGGAACCCGAGCAAAAAGAGAACAAAAAAAGCAACAACCCTCCCCGACCAGACAGTTGCAGTTGCGTCAAGTTCGAAACTCGCCCCGGAAACAGTGGACAGCGCTGCTGGCGGGATATAGTGCGAAGGGACGAGGGTTTTGTGAAGCTTTTACTCCTTCAACTTTCTCGTGTCGTGTTGTTGTTGTTGTTGTTGTGCACAGCCCAATCTGCGCGGGTGTTTTTGTATTTCCTCTTCGCGTTGCAACCTAACGATACGATGCACAACCGTTTTTTCACTCCCGCAGATACTAGATAGATGGATTAGCTCAATGGACAGCGTAG]




>consensus_4025#1
ATCGATTTCTCTAGGAGAAAAAGGAGGAAATGTTCTAATACTCACACTGCACACACACAA
GAAACGCCATATAGATATATATTTGAGGGTGCCAGATTTACACCGTTCGATCGACCATTG
TTTGATAAATTCATACGTGCCTTGCTGTTGTAGTGGAAGCGGAACCCGAGCAAAAAGAGA
ACAAAAAAAGCAACAACCCTCCCCGACCAGACAGTTGCAGTTGCGTCAAGTTCGAAACTC
GCCCCGGAAACAGTGGACAGCGCTGCTGGCGGGATATAGTGCGAAGGGACGAGGGTTTTG
TGAAGCTTTTACTCCTTCAACTTTCTCGTGTCGTGTTGTTGTTGTTGTTGTTGTGCACAG
CCCAATCTGCGCGGGTGTTTTTGTATTTCCTCTTCGCGTTGCAACCTAACGATACGATGC
ACAACCGTTTTTTCACTCCCGCAGATACTAGATAGATGGATTAGCTCAATGGACAGCGTA
G

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4025#0      AGAGATTTATTACACTAGGAGAAAAAGGAGGACATGTTCTAATACTCACACTGCACACAC 60
consensus_4025#1      ----ATCGATTTCTCTAGGAGAAAAAGGAGGAAATGTTCTAATACTCACACTGCACACAC 56
                          **  *** * ****************** ***************************

consensus_4025#0      ACAAGAAACGCCATATAGATATATATTTGAGGGTGCCAGATTTACACCGTTCGATCGACC 120
consensus_4025#1      ACAAGAAACGCCATATAGATATATATTTGAGGGTGCCAGATTTACACCGTTCGATCGACC 116
                      ************************************************************

consensus_4025#0      ATTGTTTGATAAATTCATACGTGCCTTGCTGTTGTAGTGGAAGCGGAACCCGAGCAAAAA 180
consensus_4025#1      ATTGTTTGATAAATTCATACGTGCCTTGCTGTTGTAGTGGAAGCGGAACCCGAGCAAAAA 176
                      ************************************************************

consensus_4025#0      GAGAACAAAAAAAGCAACAACCCTCCCCGACCAGACAGTTGCAGTTGCGTCAAGTTCGAA 240
consensus_4025#1      GAGAACAAAAAAAGCAACAACCCTCCCCGACCAGACAGTTGCAGTTGCGTCAAGTTCGAA 236
                      ************************************************************

consensus_4025#0      ACTCACCCCGGAAACAGTGAGCATTCACAACGGATGGGGGGACACAGCGGGGATGAACAG 300
consensus_4025#1      ACTCGCCCCGGAAACAGTGG------------------------------------ACAG 260
                      **** **************                                     ****

consensus_4025#0      GGCTGCTGGCGGAATATAGTGCGAAGGGACGAGGGTTTTGTGAAGCTTTTACTCCTTCAA 360
consensus_4025#1      CGCTGCTGGCGGGATATAGTGCGAAGGGACGAGGGTTTTGTGAAGCTTTTACTCCTTCAA 320
                       *********** ***********************************************

consensus_4025#0      CTTTCTCGTGTCGTGTTGTTGTTGTTGTTGTTGTGCACAGCCCAATCTGCGCGGGTGTTT 420
consensus_4025#1      CTTTCTCGTGTCGTGTTGTTGTTGTTGTTGTTGTGCACAGCCCAATCTGCGCGGGTGTTT 380
                      ************************************************************

consensus_4025#0      TTTGTATTTCCTCTTTGCGTTGCAACCTAACGATACGATGCACAACCGTTTTTTCACTCC 480
consensus_4025#1      TT-GTATTTCCTCTTCGCGTTGCAACCTAACGATACGATGCACAACCGTTTTTTCACTCC 439
                      ** ************ ********************************************

consensus_4025#0      CGTACACACTCTCACACACACAC-ACTCCAAAACACAGTCACCAAATATCCGGTTTTTTG 539
consensus_4025#1      CGCAGATACTAG-ATAGATGGATTAGCTCAATGGACAG-CGTAG---------------- 481
                      ** * * ***   * * *   *  *   ***   **** *                    

consensus_4025#0      CACCACTCACTGTTAGGGAACGAACGCGAAGAGGCAGAAACTAAACCTACAAACAAGAGA 599
consensus_4025#1      ------------------------------------------------------------
                                                                                  

consensus_4025#0      GATAAGAATTATTGTAAAAAAAACATTGCAAAAACCAAACGAAGAAGCGGATTAATTAAT 659
consensus_4025#1      ------------------------------------------------------------
                                                                                  

consensus_4025#0      GTAACTTTACCCCGTANTAGTGCGCCGGGAGAGAGAGAGGAACTGGAGAAAGAGAGTAAG 719
consensus_4025#1      ------------------------------------------------------------
                                                                                  

consensus_4025#0      ATTATAATTACTATTTACCACAACAGCATCCCCCTGGCGAACGTAAGAAAAAAAGTTGAA 779
consensus_4025#1      ------------------------------------------------------------
                                                                                  

consensus_4025#0      ACAAACTCTTAAACATTTACACGTCCAAA 808
consensus_4025#1      -----------------------------