cluster # 4027

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Anopheles gambiae
cluster # 4027 cluster # 4027 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4027#0 length = 875 sequences # 2

consensus_4027#1 length = 477 sequences # 1

consensusID : consensus_4027#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 875
fasta sequence

                              [CCGGCCCGGCTAGCGCTGAAGGAAATCCCCGACAATTTCGACCTGCGCGATGACATGCTGCTGAAGAACCTGGATCAAAAGTCCGTCCGCAGCCTGAACGGTTGCCGAGTGACGGACGAAATCCTGCGGCTGGTACCTAACATCGACAACTTTCGCCTGGCGCTGCGAACAATTAAGCTGTGGGCAAAGCGACATGGAATATACTCCAACTCGCTCGGTTACTTTGGAGGTGTCTCCTGGGCAATGCTGGTCGCTAGAACGTGCCAGCTCTATCCGAATGCGGTGGCAGCAACGCTGGTGCATAAATTTTTCCTCGTCTTCTCCCGTTGGAAGTGGCCCCAACCGGTTCTGCTCAAACAGCCCGACAACGTGAACCTAGGATTCCAGGTTTGGGATCCGCGAGTAAATGTGCAGGATCGGTTCCACCTGATGCCGATCATAACGCCCGCGTATCCGCAGCAAAATTCCACATTCAACGTGTCCAGCTCCACGCGCAAGGTGATGCTGATGGAGTTCAACCGTGGCATGCAGATAACGGACGATATTATGATGGGCAAGCAGATGTGGGAGAAGCTGTTCGAGGCACCGAGTTTCTTTTACCGGTATCGTCATTTTATCGTATTGCTAGTCACCTCCAGCAATGCAGATGATCATTTGGAGTGGTGCGGTCTGGTGGAGTCGAAAATACGTTACCTCATCCAGAACCTTGAGCGCAACCAGCACATCAATCTTGCGCACGTGAACCCAAAGTGCTACGAGCAGCACGAACAAAACTCGGCCACCACACTGAACGGGGGCGGACGGGTAAACCGACCCCATTCTGTTCGCTCTGGTTCATCGGGCTGGAGTTTGAACGCTCCGAGAACCTGAACGTC]

[+] EMBL BM598286             [CCGGCCCGGCTAGCGCTGAAGGAAATCCCCGACAATTTCGACCTGCGCGATGACATGCTGCTGAAGAACCTGGATCAAAAGTCCGTCCGCAGCCTGAACGGTTGCCGAGTGACGGACGAAATCCTGCGGCTGGTACCTAACATCGACAACTTTCGCCTGGCGCTGCGAACAATTAAGCTGTGGGCAAAGCGACATGGAATATACTCCAACTCGCTCGGTTACTTTGGAGGTGTCTCCTGGGCAATGCTGGTCGCTAGAACGTGCCAGCTCTATCCGAATGCGGTGGCAGCAACGCTGGTGCATAAATTTTTCCTCGTCTTCTCCCGTTGGAAGTGGCCCCAACCGGTTCTGCTCAAACAGCCCGACAACGTGAACCTAGGATTCCAGGTTTGGGATCCGCGAGTAAATGTGCAGGATCGGTTCCACCTGATGCCGATCATAACGCCCGCGTATCCGCAGCAAAATTCCACATTCAACGTGTCCAGCTCCACGCGCAAGGTGATGCTGATGGAGTTCAACCGTGGCATGCAGATAACGGACGATATTATGATGGGCAAGCAGATGTGGGAGAAGCTGTTCGAGGCACCGAGTTTCTTTTACCGGTATCGTCATTTTATCGTATTGCTAGTCACC                                                                                                                                                                                                                                                  ]
[+] EMBL AL933712             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   tcgcccgagTGGAG TCAACCGTGGCATGCAGATTACGGACGATA TATGATGGGCAAGCAGATGTGGGAGAAGCTGTTCGAGGCACCGAGTTTCTTTTACCGGTATCGTCATTTTATCGTATTGCTAGTCACCTCCAGCAATGCAGATGATCATTTGGAGTGGTGCGGTCTGGTGGAGTCGAAAATACGTTACCTCATCCAGAACCTTGAGCGCAACCAGCACATCAATCTTGCGCACGTGAACCCAAAGTGCTACGAGCAGCACGAACAAAACTCGGCCACCACACTGAACGGGGGCGGACGGGTAAACCGACCCCATTCTGTTCGCTCTGGTTCATCGGGCTGGAGTTTGAACGCTCCGAGAACCTGAACGTC]




>consensus_4027#0
CCGGCCCGGCTAGCGCTGAAGGAAATCCCCGACAATTTCGACCTGCGCGATGACATGCTG
CTGAAGAACCTGGATCAAAAGTCCGTCCGCAGCCTGAACGGTTGCCGAGTGACGGACGAA
ATCCTGCGGCTGGTACCTAACATCGACAACTTTCGCCTGGCGCTGCGAACAATTAAGCTG
TGGGCAAAGCGACATGGAATATACTCCAACTCGCTCGGTTACTTTGGAGGTGTCTCCTGG
GCAATGCTGGTCGCTAGAACGTGCCAGCTCTATCCGAATGCGGTGGCAGCAACGCTGGTG
CATAAATTTTTCCTCGTCTTCTCCCGTTGGAAGTGGCCCCAACCGGTTCTGCTCAAACAG
CCCGACAACGTGAACCTAGGATTCCAGGTTTGGGATCCGCGAGTAAATGTGCAGGATCGG
TTCCACCTGATGCCGATCATAACGCCCGCGTATCCGCAGCAAAATTCCACATTCAACGTG
TCCAGCTCCACGCGCAAGGTGATGCTGATGGAGTTCAACCGTGGCATGCAGATAACGGAC
GATATTATGATGGGCAAGCAGATGTGGGAGAAGCTGTTCGAGGCACCGAGTTTCTTTTAC
CGGTATCGTCATTTTATCGTATTGCTAGTCACCTCCAGCAATGCAGATGATCATTTGGAG
TGGTGCGGTCTGGTGGAGTCGAAAATACGTTACCTCATCCAGAACCTTGAGCGCAACCAG
CACATCAATCTTGCGCACGTGAACCCAAAGTGCTACGAGCAGCACGAACAAAACTCGGCC
ACCACACTGAACGGGGGCGGACGGGTAAACCGACCCCATTCTGTTCGCTCTGGTTCATCG
GGCTGGAGTTTGAACGCTCCGAGAACCTGAACGTC

consensusID : consensus_4027#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 477
fasta sequence

                              [AATTGGCCGAGGCGGTTCATCTGATGCCGATCATAACGCCCGCGTATCGCAGCAAATTCCACATTCAACGTGTCCAGCTCCACGCGCAAGGTGATGCTGATGGAGTTCAACCGTGGCATGCAGATAACGGACGATATTATGATGGGCAAGCAGATGTGGGAGAAGCTGTTCGAGGCACCGAGTTTCTTTTACCGGTATCGGTCATTNTTATCGTATTTGCTAGTCACCTCCAGCAATGCAGCATGATCATTTGGACGTGGTTGCGGTCTGGTGGAGTCGAAAATACGTTACCTACATCCAGAACCTTGAGCGCAACCAGCACATCAATCTTGCGCACGTGNAACCCAAAGTGCTACGAGCAGCATCGAACAAAACTCGGCCACCACACTTGAACGGGGCGGACGGTAAACCGAACCCATTCTGTTCGCTCTGGTTCATCGGGCTGGAGTTTGAACGCATCCGAGAACCTGAACGTCG]

[+] EMBL AL933671             [AATTGGCCGAGGCGGTTCATCTGATGCCGATCATAACGCCCGCGTATCGCAGCAAATTCCACATTCAACGTGTCCAGCTCCACGCGCAAGGTGATGCTGATGGAGTTCAACCGTGGCATGCAGATAACGGACGATATTATGATGGGCAAGCAGATGTGGGAGAAGCTGTTCGAGGCACCGAGTTTCTTTTACCGGTATCGGTCATTNTTATCGTATTTGCTAGTCACCTCCAGCAATGCAGCATGATCATTTGGACGTGGTTGCGGTCTGGTGGAGTCGAAAATACGTTACCTACATCCAGAACCTTGAGCGCAACCAGCACATCAATCTTGCGCACGTGNAACCCAAAGTGCTACGAGCAGCATCGAACAAAACTCGGCCACCACACTTGAACGGGGCGGACGGTAAACCGAACCCATTCTGTTCGCTCTGGTTCATCGGGCTGGAGTTTGAACGCATCCGAGAACCTGAACGTCG]




>consensus_4027#1
AATTGGCCGAGGCGGTTCATCTGATGCCGATCATAACGCCCGCGTATCGCAGCAAATTCC
ACATTCAACGTGTCCAGCTCCACGCGCAAGGTGATGCTGATGGAGTTCAACCGTGGCATG
CAGATAACGGACGATATTATGATGGGCAAGCAGATGTGGGAGAAGCTGTTCGAGGCACCG
AGTTTCTTTTACCGGTATCGGTCATTNTTATCGTATTTGCTAGTCACCTCCAGCAATGCA
GCATGATCATTTGGACGTGGTTGCGGTCTGGTGGAGTCGAAAATACGTTACCTACATCCA
GAACCTTGAGCGCAACCAGCACATCAATCTTGCGCACGTGNAACCCAAAGTGCTACGAGC
AGCATCGAACAAAACTCGGCCACCACACTTGAACGGGGCGGACGGTAAACCGAACCCATT
CTGTTCGCTCTGGTTCATCGGGCTGGAGTTTGAACGCATCCGAGAACCTGAACGTCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4027#0      CCGGCCCGGCTAGCGCTGAAGGAAATCCCCGACAATTTCGACCTGCGCGATGACATGCTG 60
consensus_4027#1      ------------------------------------------------------------
                                                                                  

consensus_4027#0      CTGAAGAACCTGGATCAAAAGTCCGTCCGCAGCCTGAACGGTTGCCGAGTGACGGACGAA 120
consensus_4027#1      ------------------------------------------------------------
                                                                                  

consensus_4027#0      ATCCTGCGGCTGGTACCTAACATCGACAACTTTCGCCTGGCGCTGCGAACAATTAAGCTG 180
consensus_4027#1      ------------------------------------------------------------
                                                                                  

consensus_4027#0      TGGGCAAAGCGACATGGAATATACTCCAACTCGCTCGGTTACTTTGGAGGTGTCTCCTGG 240
consensus_4027#1      ------------------------------------------------------------
                                                                                  

consensus_4027#0      GCAATGCTGGTCGCTAGAACGTGCCAGCTCTATCCGAATGCGGTGGCAGCAACGCTGGTG 300
consensus_4027#1      ------------------------------------------------------------
                                                                                  

consensus_4027#0      CATAAATTTTTCCTCGTCTTCTCCCGTTGGAAGTGGCCCCAACCGGTTCTGCTCAAACAG 360
consensus_4027#1      ------------------------------------------------------------
                                                                                  

consensus_4027#0      CCCGACAACGTGAACCTAGGATTCCAGGTTTGGGATCCGCGAGTAAATGTGCAGGATCGG 420
consensus_4027#1      ---------------------------------------------AATTGGCCGAGGCGG 15
                                                                   ***  ** *   ***

consensus_4027#0      TTCCACCTGATGCCGATCATAACGCCCGCGTATCCGCAGCAAAATTCCACATTCAACGTG 480
consensus_4027#1      TTC-ATCTGATGCCGATCATAACGCCCGCGTATC-GCAGCAAA-TTCCACATTCAACGTG 72
                      *** * **************************** ******** ****************

consensus_4027#0      TCCAGCTCCACGCGCAAGGTGATGCTGATGGAGTTCAACCGTGGCATGCAGATAACGGAC 540
consensus_4027#1      TCCAGCTCCACGCGCAAGGTGATGCTGATGGAGTTCAACCGTGGCATGCAGATAACGGAC 132
                      ************************************************************

consensus_4027#0      GATATTATGATGGGCAAGCAGATGTGGGAGAAGCTGTTCGAGGCACCGAGTTTCTTTTAC 600
consensus_4027#1      GATATTATGATGGGCAAGCAGATGTGGGAGAAGCTGTTCGAGGCACCGAGTTTCTTTTAC 192
                      ************************************************************

consensus_4027#0      CGGTATCG-TCATTTT-ATCGTATT-GCTAGTCACCTCCAGCAATGCAG-ATGATCATTT 656
consensus_4027#1      CGGTATCGGTCATTNTTATCGTATTTGCTAGTCACCTCCAGCAATGCAGCATGATCATTT 252
                      ******** ***** * ******** *********************** **********

consensus_4027#0      GGA-GTGGT-GCGGTCTGGTGGAGTCGAAAATACGTTACCT-CATCCAGAACCTTGAGCG 713
consensus_4027#1      GGACGTGGTTGCGGTCTGGTGGAGTCGAAAATACGTTACCTACATCCAGAACCTTGAGCG 312
                      *** ***** ******************************* ******************

consensus_4027#0      CAACCAGCACATCAATCTTGCGCACGTGAA-CCCAAAGTGCTACGAGCAGCA-CGAACAA 771
consensus_4027#1      CAACCAGCACATCAATCTTGCGCACGTGNAACCCAAAGTGCTACGAGCAGCATCGAACAA 372
                      **************************** * ********************* *******

consensus_4027#0      AACTCGGCCACCACACTGAACGGGGGCGGACGGGTAAACCGACCCCATTCTGTTCGCTCT 831
consensus_4027#1      AACTCGGCCACCACACTTGAACGGGGCGGACGG-TAAACCGAACCCATTCTGTTCGCTCT 431
                      *****************  *  *********** ******** *****************

consensus_4027#0      GGTTCATCGGGCTGGAGTTTGAACGC-TCCGAGAACCTGAACGTC- 875
consensus_4027#1      GGTTCATCGGGCTGGAGTTTGAACGCATCCGAGAACCTGAACGTCG 477
                      ************************** ******************