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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4031#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1193 fasta sequence
[AGGTACGAGAGTTGCCCGCNGTTGAAGCCGACAGTCAGAAGAAAGCAAGCAGCGACGAGGAACAGCTGCTGAACGACGTCAAGTCGTCACCGTCGAACTCGCGCGGTACGAAAAGCGCTGGAAACTATGCCCGTTTGCTGAACGAGCAGCAACAGGACGAAGGAACGGGGCTGGTCGACGAGCTGGACGAGTATGGACAGGAGCTGGCAGAGAATGAAACGGCCGGTGAGGAGGCAGCCGACGAGGAACGTGTGGTTGGTGTCGTTGGATCCCGAACCCGGGTCCCTAGCTCCCAGCGGCGATCGTCGGGAGGCAGTTCCGACTCCTCCGGCGGACCGTTCGATGCAACCGGGCTGCTCATATCCGCCTGCCTTGCTGTGATACTGATCGGAGCGCTCGTGTATCTGCTCCAGCGCGAGTTCAAGAAGCAGCGCATGATCCACCAACATCAGCAGATGGAACGGACAGCGTCCGAGCGTCGGGGAGCGGCAGTGGGAGGCGTCACGATGCAGTAGTAGTAGCGGGGAGGCATCACGATCTTTGACTGAGCTGTAGCAAAAGCAGCCCTCTTTTTTCCGCATTTCCTCCTTATTTCTCACTCTCTACATTCCTTCCGGTTGTGATTGTCATCTCAACCTTCTCCCTTGCCAACTATGATTTGAGCATAATTATTTATAGTTCGATGTGTCTGTATCAGTGACTGGAATTTAGCGATGTAAGCAATAACAAAAGAAAAACGATACAATTTTAACGAAAACCCAACGACGAATCGAAACGCGGGAAAACACACACACACACATACACTCACAAATGAATCGAGCAATCGAAAAAGAAAATGCACGTGCACACAAACACACACACAGAGAATGAATGCAGCAGCATTAAGAAGAGAAGCCCTAGCAAGTAAGGATCGTTTAGTATTAAGAGCAATCAAACACAGAGACACGTAAACAAAACGTCCCCAACAAAATGCATCCAATTCCCAGTTGTTTTTTTTTTGCCATCCAACCTACTCTGCCCTACATGTGCGCTATCTTATGCTTACTCGTTTCCTTTGAAACGCGTGCTGCGTGCGTCTTAAAGGGGGATGCGAACGAGCAATCGACAATGCATCGCCCCTCAGGCTCAACGGACAGCTTACAAACGTTTCAGCGTACGAAAATGACTGAGCATAGAATTAAGCTAACCCAGCT]
[+] EMBL BX620880 [AGGTACGAGAGTTGCCCGCNGTTGAAGCCGACAGTCAGAAGAAAGCAAGCAGCGACGAGGAACAGCTGCTGAACGACGTCAAGTCGTCACCGTCGAACTCGCGCGGTACGAAAAGCGCTGGAAACTATGCCCGTTTGCTGAACGAGCAGCAACAGGACGAAGGAACGGGGCTGGTCGACGAGCTGGACGAGTATGGACAGGAGCTGGCAGAGAATGAAACGGCCGGTGAGGAGGCAGCCGACGAGGAACGTGTGGTTGGTGTCGTTGGATCCCGAACCCGGGTCCCTAGCTCCCAGCGGCGATCGTCGGGAGGCAGTTCCGACTCCTCCGGCGGACCGTTCGATGCAACCGGGCTGCTCATATCCGCCTGCCTTGCTGTGATACTGATCGGAGCGCTCGTGTATCTGCTCCAGCGCGAGTTCAAGAAGCAGCGCATGATCCACCAACATCAGCAGATGGAACGGACAGCGTCCGAGCGTCGGGGAGCGGCAGTGGGAGGCGTCACGATGCAGTAGTAGTAGCGGGGAGGCATCACGATCTTTGACTGAGCTGTAGCAAAAGCAGCCCTCTTTTTTCCGCATTTCCTCCTTATTTCTCACTCTCTACATTCCTTCCGGTTGTGATTGTCATCTCAACCTTCTCCCTTGCCAACTATGA ]
[+] EMBL BX624162 [ TCACTCTCTACATTCCTTCCGGTTGTGATTGTCATCTCAACCTTCTCCCTTGCCAACTATGATTTGAGCATAATTATTTATAGTTCGATGTGTCTGTATCAGTGACTGGAATTTAGCGATGTAAGCAATAACAAAAGAAAAACGATACAATTTTAACGAAAACCCAACGACGAATCGAAACGCGGGAAAACACACACACACACATACACTCACAAATGAATCGAGCAATCGAAAAAGAAAATGCACGTGCACACAAACACACACACAGAGAATGAATGCAGCAGCATTAAGAAGAGAAGCCCTAGCAAGTAAGGATCGTTTAGTATTAAGAGCAATCAAACACAGAGACACGTAAACAAAACGTCCCCAACAAAATGCATCCAATTCCCAGTTGTTTTTTTTTTGCCATCCAACCTACTCTGCCCTACATGTGCGCTATCTTATGCTTACTCGTTTCCTTTGAAACGCGTGCTGCGTGCGTCTTAAAGGGGGATGCGAACGAGCAATCGACAATGCATCGCCCCTCAGGCTCAACGGACAGCTTACAAACGTTTCAGCGTACGAAAATGACTGAGCATAGAATTAAGCTAACCCAGCT]
consensusID : consensus_4031#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 478 fasta sequence
[GGCAAGAATCGGCACGNTGNAGTAGCGGGGAGGCATCACGATCTTTGACTGAGCTGTAGCAAAAGCAGCCCTCGTCTTTTCCGCATTTCCTCCTTATTTCTCACTCGTCTACATTCCTTCCGGTTGTGATTGTCATCTCAACCTTCTCCCTTGGCCAACTATGATTTGAGCATAATTATTTATAGTTCGATGTGTCTGTATCAGTGACTGGAATTTAGCGATGTAAGCAATAACAAGAAGAAAGAACGATACAAGTTTTAANCGAAAACCCAACGACGAATCGAAACGCGGGAAAACACACGACACGAGCACATACGACTCACAAATGAATCGAGCAAGTCGAAGANAAGAAAATGCAGCGTGCACACAANNCACAANACACAGAGNAAGTGAAATGCAGGCAGGCATTGAAGAAGAGGAAGCCCGTAGCCGAGGTCAAGGATCGTGCGTAGTATGTAAGAGCAAGTCAAAACACNAG]
[+] EMBL BX468135 [GGCAAGAATCGGCACGNTGNAGTAGCGGGGAGGCATCACGATCTTTGACTGAGCTGTAGCAAAAGCAGCCCTCGTCTTTTCCGCATTTCCTCCTTATTTCTCACTCGTCTACATTCCTTCCGGTTGTGATTGTCATCTCAACCTTCTCCCTTGGCCAACTATGATTTGAGCATAATTATTTATAGTTCGATGTGTCTGTATCAGTGACTGGAATTTAGCGATGTAAGCAATAACAAGAAGAAAGAACGATACAAGTTTTAANCGAAAACCCAACGACGAATCGAAACGCGGGAAAACACACGACACGAGCACATACGACTCACAAATGAATCGAGCAAGTCGAAGANAAGAAAATGCAGCGTGCACACAANNCACAANACACAGAGNAAGTGAAATGCAGGCAGGCATTGAAGAAGAGGAAGCCCGTAGCCGAGGTCAAGGATCGTGCGTAGTATGTAAGAGCAAGTCAAAACACNAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4031#0 AGGTACGAGAGTTGCCCGCNGTTGAAGCCGACAGTCAGAAGAAAGCAAGCAGCGACGAGG 60
consensus_4031#1 ------------------------------------------------------------
consensus_4031#0 AACAGCTGCTGAACGACGTCAAGTCGTCACCGTCGAACTCGCGCGGTACGAAAAGCGCTG 120
consensus_4031#1 ------------------------------------------------------------
consensus_4031#0 GAAACTATGCCCGTTTGCTGAACGAGCAGCAACAGGACGAAGGAACGGGGCTGGTCGACG 180
consensus_4031#1 ------------------------------------------------------------
consensus_4031#0 AGCTGGACGAGTATGGACAGGAGCTGGCAGAGAATGAAACGGCCGGTGAGGAGGCAGCCG 240
consensus_4031#1 ------------------------------------------------------------
consensus_4031#0 ACGAGGAACGTGTGGTTGGTGTCGTTGGATCCCGAACCCGGGTCCCTAGCTCCCAGCGGC 300
consensus_4031#1 ------------------------------------------------------------
consensus_4031#0 GATCGTCGGGAGGCAGTTCCGACTCCTCCGGCGGACCGTTCGATGCAACCGGGCTGCTCA 360
consensus_4031#1 ------------------------------------------------------------
consensus_4031#0 TATCCGCCTGCCTTGCTGTGATACTGATCGGAGCGCTCGTGTATCTGCTCCAGCGCGAGT 420
consensus_4031#1 ------------------------------------------------------------
consensus_4031#0 TCAAGAAGCAGCGCATGATCCACCAACATCAGCAGATGGAACGGACAGCGTCCGAGCGTC 480
consensus_4031#1 ------------------------------------------------------------
consensus_4031#0 GGGGAGCGGCAGTGGGAGGCGTCACGATGCAGTAGTAGTAGCGGGGAGGCATCACGATCT 540
consensus_4031#1 ----------GGCAAGAATCGGCACGNTGNAGTAG------CGGGGAGGCATCACGATCT 44
* ** ** **** ** ***** *******************
consensus_4031#0 TTGACTGAGCTGTAGCAAAAGCAGCCCTC-TTTTTTCCGCATTTCCTCCTTATTTCTCAC 599
consensus_4031#1 TTGACTGAGCTGTAGCAAAAGCAGCCCTCGTCTTTTCCGCATTTCCTCCTTATTTCTCAC 104
***************************** * ****************************
consensus_4031#0 TC-TCTACATTCCTTCCGGTTGTGATTGTCATCTCAACCTTCTCCCTTG-CCAACTATGA 657
consensus_4031#1 TCGTCTACATTCCTTCCGGTTGTGATTGTCATCTCAACCTTCTCCCTTGGCCAACTATGA 164
** ********************************************** **********
consensus_4031#0 TTTGAGCATAATTATTTATAGTTCGATGTGTCTGTATCAGTGACTGGAATTTAGCGATGT 717
consensus_4031#1 TTTGAGCATAATTATTTATAGTTCGATGTGTCTGTATCAGTGACTGGAATTTAGCGATGT 224
************************************************************
consensus_4031#0 AAGCAATAACAAAAGAAAA--ACGATACAATTTT--AACGAAAACCCAACGACGAATCGA 773
consensus_4031#1 AAGCAATAACAAGAAGAAAGAACGATACAAGTTTTAANCGAAAACCCAACGACGAATCGA 284
************ * *** ********* *** * **********************
consensus_4031#0 AACGCGGGAAAACACAC---ACACACACATAC-ACTCACAAATGAATCGAGCAA-TCGAA 828
consensus_4031#1 AACGCGGGAAAACACACGACACGAGCACATACGACTCACAAATGAATCGAGCAAGTCGAA 344
***************** ** ******* ********************* *****
consensus_4031#0 --AAAGAAAATGCA-CGTGCACACAAAC----ACACACACAGAGAATGAA-TGCAGC--A 878
consensus_4031#1 GANAAGAAAATGCAGCGTGCACACAANNCACAANACACAGAGNAAGTGAAATGCAGGCAG 404
*********** *********** * ***** ** * **** *****
consensus_4031#0 GCATT-AAGAAGAG-AAGCCC-TAGC--AAGT-AAGGATCGTT--TAGTAT-TAAGAGCA 929
consensus_4031#1 GCATTGAAGAAGAGGAAGCCCGTAGCCGAGGTCAAGGATCGTGCGTAGTATGTAAGAGCA 464
***** ******** ****** **** * ** ********* ****** ********
consensus_4031#0 ATCAAACACAGAGACACGTAAACAAAACGTCCCCAACAAAATGCATCCAATTCCCAGTTG 989
consensus_4031#1 AGTCAAAACACNAG---------------------------------------------- 478
* ** ***
consensus_4031#0 TTTTTTTTTTGCCATCCAACCTACTCTGCCCTACATGTGCGCTATCTTATGCTTACTCGT 1049
consensus_4031#1 ------------------------------------------------------------
consensus_4031#0 TTCCTTTGAAACGCGTGCTGCGTGCGTCTTAAAGGGGGATGCGAACGAGCAATCGACAAT 1109
consensus_4031#1 ------------------------------------------------------------
consensus_4031#0 GCATCGCCCCTCAGGCTCAACGGACAGCTTACAAACGTTTCAGCGTACGAAAATGACTGA 1169
consensus_4031#1 ------------------------------------------------------------
consensus_4031#0 GCATAGAATTAAGCTAACCCAGCT 1193
consensus_4031#1 ------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||