cluster # 4037

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 4037 cluster # 4037 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4037#0 length = 731 sequences # 1

consensus_4037#1 length = 682 sequences # 2

consensusID : consensus_4037#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 731
fasta sequence

                              [CCGGGTCAGACCGGTGTGTTGTGGCCTCGCTTCAGGGGGGAGGACTGTCCCGTGATATAACCCGCACTCGATTACGGTTCCACGCACTCACCCAACGGGGTTTCATAGGGTGTACTACTGCTACGCCTGTTTGTGCCCTGTTGTGTTTGCTGATTCCGGGACAGCTCTCCTGGACAGGTCAGGACAGGCCTGTAACCGTCCGGCGGCGAGTGGTGGTTGTGTGTGCGCGTGTGTGTCTGCAGTACATGGGCTTGTACTGCAGTGTGTTCGATTGCCAGTCACCAGTTAGTGCATCAAATTCTCACATTTTTACGAACCAGCCGCGCCGAACAGAGCCTGCCTCGTTTGACGTTTGACGCACACACGATCGACGACAAACAAACAAACAAAAAAACCGTGCCTTCTAGAGCCGGCAGTTGGTTAAATCCCTCCATTGGCTTAGTAGTGTGTGTGTGTGTGTGTTTGGGTTTGTGTGTTGGGGGGGGGTGGTGTGTCCAAAGCGACCAAGTGTGCCGTACCACACAACAACAACAACAACAGCAACAACAACAACAACAACAACAACAACAGCAAAAATCATTCCCTTCCGAATCGTACCGTCGATTTGTGTGTGTTGTTATGCAGCCGACGGAGCTCCCAGACGAGGACTTATGACGAATCCTTCCCTGGCCATGGACGCTTGTTTCACCGCTTTCGAAAAGATGAAAAGATCGGCTTTCCCTGAACAAGTT]

[+] EMBL BM617959             [CCGGGTCAGACCGGTGTGTTGTGGCCTCGCTTCAGGGGGGAGGACTGTCCCGTGATATAACCCGCACTCGATTACGGTTCCACGCACTCACCCAACGGGGTTTCATAGGGTGTACTACTGCTACGCCTGTTTGTGCCCTGTTGTGTTTGCTGATTCCGGGACAGCTCTCCTGGACAGGTCAGGACAGGCCTGTAACCGTCCGGCGGCGAGTGGTGGTTGTGTGTGCGCGTGTGTGTCTGCAGTACATGGGCTTGTACTGCAGTGTGTTCGATTGCCAGTCACCAGTTAGTGCATCAAATTCTCACATTTTTACGAACCAGCCGCGCCGAACAGAGCCTGCCTCGTTTGACGTTTGACGCACACACGATCGACGACAAACAAACAAACAAAAAAACCGTGCCTTCTAGAGCCGGCAGTTGGTTAAATCCCTCCATTGGCTTAGTAGTGTGTGTGTGTGTGTGTTTGGGTTTGTGTGTTGGGGGGGGGTGGTGTGTCCAAAGCGACCAAGTGTGCCGTACCACACAACAACAACAACAACAGCAACAACAACAACAACAACAACAACAACAGCAAAAATCATTCCCTTCCGAATCGTACCGTCGATTTGTGTGTGTTGTTATGCAGCCGACGGAGCTCCCAGACGAGGACTTATGACGAATCCTTCCCTGGCCATGGACGCTTGTTTCACCGCTTTCGAAAAGATGAAAAGATCGGCTTTCCCTGAACAAGTT]




>consensus_4037#0
CCGGGTCAGACCGGTGTGTTGTGGCCTCGCTTCAGGGGGGAGGACTGTCCCGTGATATAA
CCCGCACTCGATTACGGTTCCACGCACTCACCCAACGGGGTTTCATAGGGTGTACTACTG
CTACGCCTGTTTGTGCCCTGTTGTGTTTGCTGATTCCGGGACAGCTCTCCTGGACAGGTC
AGGACAGGCCTGTAACCGTCCGGCGGCGAGTGGTGGTTGTGTGTGCGCGTGTGTGTCTGC
AGTACATGGGCTTGTACTGCAGTGTGTTCGATTGCCAGTCACCAGTTAGTGCATCAAATT
CTCACATTTTTACGAACCAGCCGCGCCGAACAGAGCCTGCCTCGTTTGACGTTTGACGCA
CACACGATCGACGACAAACAAACAAACAAAAAAACCGTGCCTTCTAGAGCCGGCAGTTGG
TTAAATCCCTCCATTGGCTTAGTAGTGTGTGTGTGTGTGTGTTTGGGTTTGTGTGTTGGG
GGGGGGTGGTGTGTCCAAAGCGACCAAGTGTGCCGTACCACACAACAACAACAACAACAG
CAACAACAACAACAACAACAACAACAACAGCAAAAATCATTCCCTTCCGAATCGTACCGT
CGATTTGTGTGTGTTGTTATGCAGCCGACGGAGCTCCCAGACGAGGACTTATGACGAATC
CTTCCCTGGCCATGGACGCTTGTTTCACCGCTTTCGAAAAGATGAAAAGATCGGCTTTCC
CTGAACAAGTT

consensusID : consensus_4037#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 682
fasta sequence

                              [CCGCGGACGCGTGGGCGCAAGCGCATCGCGTACGTTCGCGCATCAGCTCTCCGTTTGCGTTTCGAGTGATATTGATTGCGTCGTTCCGTCGATAGCTAAGTGACGGTGTTTGTTTAGAGTCGGAGAATACAAAAACAAAAACGCGTTAATCAACAATCATGTCACTGGAGGTGAATATTCCTGTGCAAGTTGAGCCGACGGAGCTCCCAGACGAGGACTTTATGACGAATCCTTCGCTGGCCATGGACGCTTGTTTCACCGCTTTCGACAAGGATGGAGATGATCGGCTTTCGCTGAACGAGTTTACGCTGATCTGTCGGGCACTGTTCCGCAATGATAAAGGTCACATCTACGTGGTGCCGTCCGATCGGCTGGAGCAGATGTTTGCCGTGTTCGACAAGAACGAGGACGGCTACATCGATCGGGAGGAGTTCCAGTTCTGCTGGAACCAGTGGATCAAGACGATCGTGCGCCCCATTAGCGCCTTTCTCATCGTGGACGTCCAGAACGACTTCATCAGCGGTTCGCTCAACATCAGCAACTGCAGCGCGCAGCAGAATGGGCTGGAGGTTATCGAGCCGATCAATAAGCTGCTGGATACGGTTGACTTCCGATGCGGTGTTCTACTCGCTGGACTGGCACCCGAGCGATCACGTTTCCTTCATCGACAACATCAAACAGC]

[+] EMBL BM627667             [CCGCGGACGCGTGGGCGCAAGCGCATCGCGTACGTTCGCGCATCAGCTCTCCGTTTGCGTTTCGAGTGATATTGATTGCGTCGTTCCGTCGATAGCTAAGTGACGGTGTTTGTTTAGAGTCGGAGAATACAAAAACAAAAACGCGTTAATCAACAATCATGTCACTGGAGGTGAATATTCCTGTGCAAGTTGAGCCGACGGAGCTCCCAGACGAGGACTTTATGACGAATCCTTCGCTGGCCATGGACGCTTGTTTCACCGCTTTCGACAAGGATGGAGATGATCGGCTTTCGCTGAACGAGTTTACGCTGATCTGTCGGGCACTGTTCCGCAATGATAAAGGTCACATCTACGTGGTGCCGTCCGATCGGCTGGAGCAGATGTTTGCCGTGTTCGACAAGAACGAGGACGGCTACATCGATCGGGAGGAGTTCCAGTTCTGCTGGAACCAGTGGATCAAGACGATCGTGCGCCCCATTAGCGCCTTTCTCATCGTGGACGTCCAGAACGACTTCATCAGCGGTTCGCTCAACATCAGCAACTGCAGCG                                                                                                                                     ]
[+] EMBL BM593974             [           ccgcCGCAAGCGCATCGCGTACGTTCGCGCATCAGCTCTCCGTTTGCGTTTCGAGTGATATTGATTGCGTCGTTCCGTCGATAGCTAAGTGACGGTGTTTGTTTAGAGTCGGAGAATACAAAAACAAAAACGCGTTAATCAACAATCATGTCACTGGAGGTGAATATTCCTGTGCAAGTTGAGCCGACGGAGCTCCCAGACGAGGACTTTATGACGAATCCTTCGCTGGCCATGGACGCTTGTTTCACCGCTTTCGACAAGGATGGAGATGATCGGCTTTCGCTGAACGAGTTTACGCTGATCTGTCGGGCACTGTTCCGCAATGATAAAGGTCACATCTACGTGGTGCCGTCCGATCGGCTGGAGCAGATGTTTGCCGTGTTCGACAAGAACGAGGACGGCTACATCGATCGGGAGGAGTTCCAGTTCTGCTGGAACCAGTGGATCAAGACGATCGTGCGCCCCATTAGCGCCTTTCTCATCGTGGACGTCCAGAACGACTTCATCAGCGGTTCGCTCAACATCAGCAACTGCAGCGCGCAGCAGAATGGGCTGGAGGTTATCGAGCCGATCAATAAGCTGCTGGATACGGTTGACTTCCGATGCGGTGTTCTACTCGCTGGACTGGCACCCGAGCGATCACGTTTCCTTCATCGACAACATCAAACAGC]




>consensus_4037#1
CCGCGGACGCGTGGGCGCAAGCGCATCGCGTACGTTCGCGCATCAGCTCTCCGTTTGCGT
TTCGAGTGATATTGATTGCGTCGTTCCGTCGATAGCTAAGTGACGGTGTTTGTTTAGAGT
CGGAGAATACAAAAACAAAAACGCGTTAATCAACAATCATGTCACTGGAGGTGAATATTC
CTGTGCAAGTTGAGCCGACGGAGCTCCCAGACGAGGACTTTATGACGAATCCTTCGCTGG
CCATGGACGCTTGTTTCACCGCTTTCGACAAGGATGGAGATGATCGGCTTTCGCTGAACG
AGTTTACGCTGATCTGTCGGGCACTGTTCCGCAATGATAAAGGTCACATCTACGTGGTGC
CGTCCGATCGGCTGGAGCAGATGTTTGCCGTGTTCGACAAGAACGAGGACGGCTACATCG
ATCGGGAGGAGTTCCAGTTCTGCTGGAACCAGTGGATCAAGACGATCGTGCGCCCCATTA
GCGCCTTTCTCATCGTGGACGTCCAGAACGACTTCATCAGCGGTTCGCTCAACATCAGCA
ACTGCAGCGCGCAGCAGAATGGGCTGGAGGTTATCGAGCCGATCAATAAGCTGCTGGATA
CGGTTGACTTCCGATGCGGTGTTCTACTCGCTGGACTGGCACCCGAGCGATCACGTTTCC
TTCATCGACAACATCAAACAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4037#0      CCGGGTCAGACCGGTGTGTTGTGGCCTCGCTTCAGGGGGGAGGACTGTCCCGTGATATAA 60
consensus_4037#1      -----------------------------------------CCGCGGACGCGTGGGCGCA 19
                                                                  * * * ****     *

consensus_4037#0      CCCGCACTCGATTACGGTTCCACG-CACTCACCCAACGGGGTTTCATAGGGTGTACTACT 119
consensus_4037#1      AGCGCA-TCGCGTACGTTCGCGCATCAGCTCTCCGTTTGCGTTTCGAGTGATAT-TGATT 77
                        **** ***  **** *  * *  **     **    * *****    * * *   * *

consensus_4037#0      GCTACGC-CTGTTTGTGCCCTGTTGTGTTTGCTGATTCCGGGACAGCTCTCCTGGACAGG 178
consensus_4037#1      GCGTCGTTCCGTCGATAGCTAAGTGACGGTGTTTGTTTAGAGTCGGAGAA--TACAAAAA 135
                      **  **  * **   *  *    **    ** *  **  * * * *      *  * *  

consensus_4037#0      TCAGGACAGGCCTGT-AACCGTCCGGCGGCGAGTGGTGGTTGTGTGTGCGCGTGT-GTGT 236
consensus_4037#1      CAAAAACGCGTTAATCAACAATCATGTCACTGGAGGTGAATATTCCTGTGCAAGTTGAGC 195
                        *  **  *    * ***  **  *   *  * ****  * *   ** **  ** * * 

consensus_4037#0      CTGC--AGTACATGGGCTTGTACTGCAGTGTGT-TCGATTGCCAGTCACCAGTTAGTGCA 293
consensus_4037#1      CGACGGAGCTCCCAGACGAGGACTTTATGACGAATCCTTCGCTGGCCATGGACGCTTGTT 255
                      *  *  **  *   * *  * ***  *    *  **  * **  * **        **  

consensus_4037#0      TCA--AATTCTCACATTTTTACGAACCAGCCGCGCCGAACAGAGCCTGCCTCGTTTGACG 351
consensus_4037#1      TCACCGCTTTCGACAAGGATG-GAGATGATCGGCTTTCGCTGAACGAGTTTACGCTGA-- 312
                      ***    **   ***    *  **      **       * ** *  *  *    ***  

consensus_4037#0      TTTGACGCACACACGATCGACGACAAACAAACAAACAAAAAAACCGTGCCTTCTAGAGCC 411
consensus_4037#1      TCTGTCGGGCAC-TGTTCCGCAATGATAAAGGTCACATCTACGTGGTGCCGTCCGA--TC 369
                      * ** **  ***  * **  * *  *  **    ***   *    ***** **      *

consensus_4037#0      GGCAGTTGGTTAAATCCCTCCATTGGCTTAGTAGTGTGTGTGTGTGTGTGTTTGGGTTTG 471
consensus_4037#1      GGCTG--GAGCAGATGTTTGCCGTGTTCGACAAGAACGAGGACGGCTACATC--GATCGG 425
                      *** *  *   * **   * *  **    *  **   * *   *  *   *   * *  *

consensus_4037#0      TGTGTTGGGGGGGGGTGGTGTGTCCAAAGCGACCAAGTGTGCCGTACCACACAACAACAA 531
consensus_4037#1      GAGGAGTTCCAGTTCTGCTGGAACCAGTG-GATCAAGACGATCGTGCGCCCCATTAGCGC 484
                         *       *   ** **   ***  * ** ****     *** *  * **  * *  

consensus_4037#0      CAACAACAGCAACAACAACAACAACAACAACAACAACAG--CAAAAATCATTCCCTTCCG 589
consensus_4037#1      CTTTCTCATCGTGGACGTCCAGAACGACTTCATCAGCGGTTCGCTCAACATCAGCAACTG 544
                      *     ** *    **  * * *** **  ** ** * *  *    * ***   *  * *

consensus_4037#0      AATCGTACCGTCGATTTG--TGTGTGTTGTTATGCAGCCGACGGAGCTCCCAGACGAGG- 646
consensus_4037#1      CAGCGCGCAGCAGAATGGGCTGGAGGTTATCGAGCCGATCAATAAGCTGCTGGATACGGT 604
                       * **  * *  ** * *  **   *** *   ** *   *   **** *  **   ** 

consensus_4037#0      --ACTTATGACGAATCCTTCC-CTGGCC--ATGGACGCTTGTTTCACCGCTTTCGAAAAG 701
consensus_4037#1      TGACTTCCGATGCGGTGTTCTACTCGCTGGACTGGCACCCGAGCGATCACGTTTCCTTCA 664
                        ****  ** *     ***  ** **   *  * * *  *    * * * **       

consensus_4037#0      ATGAAAAGATCGGCTTTCCCTGAACAAGTT 731
consensus_4037#1      TCGACAACATCAAACAGC------------ 682
                        ** ** ***      *