These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4037#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 731 fasta sequence [CCGGGTCAGACCGGTGTGTTGTGGCCTCGCTTCAGGGGGGAGGACTGTCCCGTGATATAACCCGCACTCGATTACGGTTCCACGCACTCACCCAACGGGGTTTCATAGGGTGTACTACTGCTACGCCTGTTTGTGCCCTGTTGTGTTTGCTGATTCCGGGACAGCTCTCCTGGACAGGTCAGGACAGGCCTGTAACCGTCCGGCGGCGAGTGGTGGTTGTGTGTGCGCGTGTGTGTCTGCAGTACATGGGCTTGTACTGCAGTGTGTTCGATTGCCAGTCACCAGTTAGTGCATCAAATTCTCACATTTTTACGAACCAGCCGCGCCGAACAGAGCCTGCCTCGTTTGACGTTTGACGCACACACGATCGACGACAAACAAACAAACAAAAAAACCGTGCCTTCTAGAGCCGGCAGTTGGTTAAATCCCTCCATTGGCTTAGTAGTGTGTGTGTGTGTGTGTTTGGGTTTGTGTGTTGGGGGGGGGTGGTGTGTCCAAAGCGACCAAGTGTGCCGTACCACACAACAACAACAACAACAGCAACAACAACAACAACAACAACAACAACAGCAAAAATCATTCCCTTCCGAATCGTACCGTCGATTTGTGTGTGTTGTTATGCAGCCGACGGAGCTCCCAGACGAGGACTTATGACGAATCCTTCCCTGGCCATGGACGCTTGTTTCACCGCTTTCGAAAAGATGAAAAGATCGGCTTTCCCTGAACAAGTT] [+] EMBL BM617959 [CCGGGTCAGACCGGTGTGTTGTGGCCTCGCTTCAGGGGGGAGGACTGTCCCGTGATATAACCCGCACTCGATTACGGTTCCACGCACTCACCCAACGGGGTTTCATAGGGTGTACTACTGCTACGCCTGTTTGTGCCCTGTTGTGTTTGCTGATTCCGGGACAGCTCTCCTGGACAGGTCAGGACAGGCCTGTAACCGTCCGGCGGCGAGTGGTGGTTGTGTGTGCGCGTGTGTGTCTGCAGTACATGGGCTTGTACTGCAGTGTGTTCGATTGCCAGTCACCAGTTAGTGCATCAAATTCTCACATTTTTACGAACCAGCCGCGCCGAACAGAGCCTGCCTCGTTTGACGTTTGACGCACACACGATCGACGACAAACAAACAAACAAAAAAACCGTGCCTTCTAGAGCCGGCAGTTGGTTAAATCCCTCCATTGGCTTAGTAGTGTGTGTGTGTGTGTGTTTGGGTTTGTGTGTTGGGGGGGGGTGGTGTGTCCAAAGCGACCAAGTGTGCCGTACCACACAACAACAACAACAACAGCAACAACAACAACAACAACAACAACAACAGCAAAAATCATTCCCTTCCGAATCGTACCGTCGATTTGTGTGTGTTGTTATGCAGCCGACGGAGCTCCCAGACGAGGACTTATGACGAATCCTTCCCTGGCCATGGACGCTTGTTTCACCGCTTTCGAAAAGATGAAAAGATCGGCTTTCCCTGAACAAGTT] consensusID : consensus_4037#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 682 fasta sequence [CCGCGGACGCGTGGGCGCAAGCGCATCGCGTACGTTCGCGCATCAGCTCTCCGTTTGCGTTTCGAGTGATATTGATTGCGTCGTTCCGTCGATAGCTAAGTGACGGTGTTTGTTTAGAGTCGGAGAATACAAAAACAAAAACGCGTTAATCAACAATCATGTCACTGGAGGTGAATATTCCTGTGCAAGTTGAGCCGACGGAGCTCCCAGACGAGGACTTTATGACGAATCCTTCGCTGGCCATGGACGCTTGTTTCACCGCTTTCGACAAGGATGGAGATGATCGGCTTTCGCTGAACGAGTTTACGCTGATCTGTCGGGCACTGTTCCGCAATGATAAAGGTCACATCTACGTGGTGCCGTCCGATCGGCTGGAGCAGATGTTTGCCGTGTTCGACAAGAACGAGGACGGCTACATCGATCGGGAGGAGTTCCAGTTCTGCTGGAACCAGTGGATCAAGACGATCGTGCGCCCCATTAGCGCCTTTCTCATCGTGGACGTCCAGAACGACTTCATCAGCGGTTCGCTCAACATCAGCAACTGCAGCGCGCAGCAGAATGGGCTGGAGGTTATCGAGCCGATCAATAAGCTGCTGGATACGGTTGACTTCCGATGCGGTGTTCTACTCGCTGGACTGGCACCCGAGCGATCACGTTTCCTTCATCGACAACATCAAACAGC] [+] EMBL BM627667 [CCGCGGACGCGTGGGCGCAAGCGCATCGCGTACGTTCGCGCATCAGCTCTCCGTTTGCGTTTCGAGTGATATTGATTGCGTCGTTCCGTCGATAGCTAAGTGACGGTGTTTGTTTAGAGTCGGAGAATACAAAAACAAAAACGCGTTAATCAACAATCATGTCACTGGAGGTGAATATTCCTGTGCAAGTTGAGCCGACGGAGCTCCCAGACGAGGACTTTATGACGAATCCTTCGCTGGCCATGGACGCTTGTTTCACCGCTTTCGACAAGGATGGAGATGATCGGCTTTCGCTGAACGAGTTTACGCTGATCTGTCGGGCACTGTTCCGCAATGATAAAGGTCACATCTACGTGGTGCCGTCCGATCGGCTGGAGCAGATGTTTGCCGTGTTCGACAAGAACGAGGACGGCTACATCGATCGGGAGGAGTTCCAGTTCTGCTGGAACCAGTGGATCAAGACGATCGTGCGCCCCATTAGCGCCTTTCTCATCGTGGACGTCCAGAACGACTTCATCAGCGGTTCGCTCAACATCAGCAACTGCAGCG ] [+] EMBL BM593974 [ ccgcCGCAAGCGCATCGCGTACGTTCGCGCATCAGCTCTCCGTTTGCGTTTCGAGTGATATTGATTGCGTCGTTCCGTCGATAGCTAAGTGACGGTGTTTGTTTAGAGTCGGAGAATACAAAAACAAAAACGCGTTAATCAACAATCATGTCACTGGAGGTGAATATTCCTGTGCAAGTTGAGCCGACGGAGCTCCCAGACGAGGACTTTATGACGAATCCTTCGCTGGCCATGGACGCTTGTTTCACCGCTTTCGACAAGGATGGAGATGATCGGCTTTCGCTGAACGAGTTTACGCTGATCTGTCGGGCACTGTTCCGCAATGATAAAGGTCACATCTACGTGGTGCCGTCCGATCGGCTGGAGCAGATGTTTGCCGTGTTCGACAAGAACGAGGACGGCTACATCGATCGGGAGGAGTTCCAGTTCTGCTGGAACCAGTGGATCAAGACGATCGTGCGCCCCATTAGCGCCTTTCTCATCGTGGACGTCCAGAACGACTTCATCAGCGGTTCGCTCAACATCAGCAACTGCAGCGCGCAGCAGAATGGGCTGGAGGTTATCGAGCCGATCAATAAGCTGCTGGATACGGTTGACTTCCGATGCGGTGTTCTACTCGCTGGACTGGCACCCGAGCGATCACGTTTCCTTCATCGACAACATCAAACAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4037#0 CCGGGTCAGACCGGTGTGTTGTGGCCTCGCTTCAGGGGGGAGGACTGTCCCGTGATATAA 60 consensus_4037#1 -----------------------------------------CCGCGGACGCGTGGGCGCA 19 * * * **** * consensus_4037#0 CCCGCACTCGATTACGGTTCCACG-CACTCACCCAACGGGGTTTCATAGGGTGTACTACT 119 consensus_4037#1 AGCGCA-TCGCGTACGTTCGCGCATCAGCTCTCCGTTTGCGTTTCGAGTGATAT-TGATT 77 **** *** **** * * * ** ** * ***** * * * * * consensus_4037#0 GCTACGC-CTGTTTGTGCCCTGTTGTGTTTGCTGATTCCGGGACAGCTCTCCTGGACAGG 178 consensus_4037#1 GCGTCGTTCCGTCGATAGCTAAGTGACGGTGTTTGTTTAGAGTCGGAGAA--TACAAAAA 135 ** ** * ** * * ** ** * ** * * * * * * * consensus_4037#0 TCAGGACAGGCCTGT-AACCGTCCGGCGGCGAGTGGTGGTTGTGTGTGCGCGTGT-GTGT 236 consensus_4037#1 CAAAAACGCGTTAATCAACAATCATGTCACTGGAGGTGAATATTCCTGTGCAAGTTGAGC 195 * ** * * *** ** * * * **** * * ** ** ** * * consensus_4037#0 CTGC--AGTACATGGGCTTGTACTGCAGTGTGT-TCGATTGCCAGTCACCAGTTAGTGCA 293 consensus_4037#1 CGACGGAGCTCCCAGACGAGGACTTTATGACGAATCCTTCGCTGGCCATGGACGCTTGTT 255 * * ** * * * * *** * * ** * ** * ** ** consensus_4037#0 TCA--AATTCTCACATTTTTACGAACCAGCCGCGCCGAACAGAGCCTGCCTCGTTTGACG 351 consensus_4037#1 TCACCGCTTTCGACAAGGATG-GAGATGATCGGCTTTCGCTGAACGAGTTTACGCTGA-- 312 *** ** *** * ** ** * ** * * * *** consensus_4037#0 TTTGACGCACACACGATCGACGACAAACAAACAAACAAAAAAACCGTGCCTTCTAGAGCC 411 consensus_4037#1 TCTGTCGGGCAC-TGTTCCGCAATGATAAAGGTCACATCTACGTGGTGCCGTCCGA--TC 369 * ** ** *** * ** * * * ** *** * ***** ** * consensus_4037#0 GGCAGTTGGTTAAATCCCTCCATTGGCTTAGTAGTGTGTGTGTGTGTGTGTTTGGGTTTG 471 consensus_4037#1 GGCTG--GAGCAGATGTTTGCCGTGTTCGACAAGAACGAGGACGGCTACATC--GATCGG 425 *** * * * ** * * ** * ** * * * * * * * * consensus_4037#0 TGTGTTGGGGGGGGGTGGTGTGTCCAAAGCGACCAAGTGTGCCGTACCACACAACAACAA 531 consensus_4037#1 GAGGAGTTCCAGTTCTGCTGGAACCAGTG-GATCAAGACGATCGTGCGCCCCATTAGCGC 484 * * ** ** *** * ** **** *** * * ** * * consensus_4037#0 CAACAACAGCAACAACAACAACAACAACAACAACAACAG--CAAAAATCATTCCCTTCCG 589 consensus_4037#1 CTTTCTCATCGTGGACGTCCAGAACGACTTCATCAGCGGTTCGCTCAACATCAGCAACTG 544 * ** * ** * * *** ** ** ** * * * * *** * * * consensus_4037#0 AATCGTACCGTCGATTTG--TGTGTGTTGTTATGCAGCCGACGGAGCTCCCAGACGAGG- 646 consensus_4037#1 CAGCGCGCAGCAGAATGGGCTGGAGGTTATCGAGCCGATCAATAAGCTGCTGGATACGGT 604 * ** * * ** * * ** *** * ** * * **** * ** ** consensus_4037#0 --ACTTATGACGAATCCTTCC-CTGGCC--ATGGACGCTTGTTTCACCGCTTTCGAAAAG 701 consensus_4037#1 TGACTTCCGATGCGGTGTTCTACTCGCTGGACTGGCACCCGAGCGATCACGTTTCCTTCA 664 **** ** * *** ** ** * * * * * * * * ** consensus_4037#0 ATGAAAAGATCGGCTTTCCCTGAACAAGTT 731 consensus_4037#1 TCGACAACATCAAACAGC------------ 682 ** ** *** * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||