cluster # 4044

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Anopheles gambiae
cluster # 4044 cluster # 4044 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4044#0 length = 729 sequences # 2

consensus_4044#1 length = 667 sequences # 1

consensusID : consensus_4044#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 729
fasta sequence

                              [AAAGAGAGGGAACTATTTGAGTGAAGCAAACGGGGCTTGTAGAGGAAAGTTTGTCCAATTTCACCAATTTCTTCGGTTCAAACAAACAGTACAGTTTATGCTCGTCTTTCCTGTGCAAAGTGCGCATAAGGATAGGATAATCACTGCAAACTCGTCCTCATCCCGTAAGCGAAGCTTTTCTTAGTGTCTCCCTTGATTGATAAAG-TGGTCAGGTGTGGATTGGCACGGGAAAAGGGAATGTAATTCGGAAAACAAAGTAGCCAGGAGGGAAAGAATCTATATGTATACACAAACACACACATTAACCCTCTCGTTCTCCCACTCTCTCTCTCTCTATCTCTTAAACTCTCTTCGCTTTTCATTATATCTCTTGCAAACATATTCCTTAACTCTAGTAGTGTAATTTAACGAAAAAAACGCTAAAACAAAAGCTAATCTAATGAAACGCGAGATAGGACGGAAATCGAAGATGCGGAAAGATGTGTACCGAGTTTGGAAAACG-ATAAGAATACTCAATGGTGGTGTAAACTCAAGCTGGAAAGCGAAAAAGCGATGAGATTCCGGTTCGAGAAAAAAAGGTATGTTGTAAAGGTCTTGCTTTCATCTTTCCTTTGTTTTGCTGTGGTTTACATAATTATTATCATTATTCAGAAAAGGGATTATTTTAAAACGTAAATTTTGTATAATTTTGAGGAAATAAGCAAGAGTGTTAGGGAGTGGAAAAGGATT]

[+] EMBL BX605466             [AAAGAGAGGGAACTATTTGAGTGAAGCAAACGGGGCTTGTAGAGGAAAGTTTGTCCAATTTCACCAATTTCTTCGGTTCAAACAAACAGTACAGTTTATGCTCGTCTTTCCTGTGCAAAGTGCGCATAAGGATAGGATAATCACTGCAAACTCGTCCTCATCCCGTAAGCGAAGCTTTTCTTAGTGTCTCCCTTGATTGATAAAG TGGTCAGGTGTGGATTGGCACGGGAAAAGGGAATGTAATTCGGAAAACAAAGTAGCCAGGAGGGAAAGAATCTATATGTATACACAAACACACACATTAACCCTCTCGTTCTCCCACTCTCTCTCTCTCTATCTCTTAAACTCTCTTCGCTTTTCATTATATCTCTTGCAAACATATTCCTTAACTCTAGTAGTGTAATTTAACGAAAAAAACGCTAAAACAAAAGCTAATCTAATGAAACGCGAGATAGGACGGAAATCGAAGATGCGGAAAGATGTGTACCGAGTTTGGAAAACG ATAAGAATACTCAATGGTGGTGTAAACTCAAGCTGGAAAGCGAAAAAGCGATGAGATTCCGGTTCGAGAAAAAAAGGTATGTTGTAAAGGTCTTGCTTTCATCTTTCCTTTGTTTTGCTGTGGTTTACATAATTATTATCATTATTCAGAAAAGGGATTATTTTAAAACGTAAATTTTGTATAATTTTGAGGAAATAAGCAAGAGTGTTAGGGAGTGGAAAAGGATT]
[+] EMBL CNS09ID8             [                                                                              tAAACAAACAGTACAGTTTATGCTCGTCTTTCCTGTGCAAAGTGCGCATAAGGATAGGATAATCACTGCAAACTCGTCCTCATCCCGTAAGCGAATTCTTTCTTAGTGTCTCCCTTGATTGATAAAGATGGTCAGGTGTGGATTGGCACGGGAAAAGGGAATGTAATTCGGAAAACAAAGTAGCCAGGAGGGAAAGAATCTATATGTATACACAAACACACACATTAACCCTCTCGTTCTCCCACTCTCTCTCTCTCTATCTCTTAAACTCTCTTCGCTTTTCATTATATCTCTTGCAAACATATTCCTTAACTCTAGTAGTGTAATTTAACGAAAAAAACGCTAAAACAAAAGCTAATCTAATGAAACGCGAGATAGGACGGAAATCGAAGATGCGGAAAGATGTGTACCGAGTTTGGAAAACGCATAAGAATACTCAATGGTGGTGTAAACTCAAGCTGGAAAGCGAAAAAGCGATGAGATTCCGGTTCGAGAAAAAAAGGTATG                                                                                                                                                  ]




>consensus_4044#0
AAAGAGAGGGAACTATTTGAGTGAAGCAAACGGGGCTTGTAGAGGAAAGTTTGTCCAATT
TCACCAATTTCTTCGGTTCAAACAAACAGTACAGTTTATGCTCGTCTTTCCTGTGCAAAG
TGCGCATAAGGATAGGATAATCACTGCAAACTCGTCCTCATCCCGTAAGCGAAGCTTTTC
TTAGTGTCTCCCTTGATTGATAAAGTGGTCAGGTGTGGATTGGCACGGGAAAAGGGAATG
TAATTCGGAAAACAAAGTAGCCAGGAGGGAAAGAATCTATATGTATACACAAACACACAC
ATTAACCCTCTCGTTCTCCCACTCTCTCTCTCTCTATCTCTTAAACTCTCTTCGCTTTTC
ATTATATCTCTTGCAAACATATTCCTTAACTCTAGTAGTGTAATTTAACGAAAAAAACGC
TAAAACAAAAGCTAATCTAATGAAACGCGAGATAGGACGGAAATCGAAGATGCGGAAAGA
TGTGTACCGAGTTTGGAAAACGATAAGAATACTCAATGGTGGTGTAAACTCAAGCTGGAA
AGCGAAAAAGCGATGAGATTCCGGTTCGAGAAAAAAAGGTATGTTGTAAAGGTCTTGCTT
TCATCTTTCCTTTGTTTTGCTGTGGTTTACATAATTATTATCATTATTCAGAAAAGGGAT
TATTTTAAAACGTAAATTTTGTATAATTTTGAGGAAATAAGCAAGAGTGTTAGGGAGTGG
AAAAGGATT

consensusID : consensus_4044#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 667
fasta sequence

                              [TCGCCCGAGGTTATAGGATAATCACTGCAAACTCGTCCTCATCCGTAAGCGAAGCTTTTCTTAGTGTCTCCCTTGATTGATAAAGTGGTCAGGTGTGGATTGGCACGGGAAAAGGGAATGTAATTCGGAAAACAAAGTAGCCAGGAGGGAAAGAATCTATATGTATACACAAACACACATCATTAACCCTCTCGTTCTCCCACTCTCTCTCTCTCTATCTCTTAAAACTCTCTTCGCTGTTTCATTATATCTCTTGCAAACATATTCCTTAACTCTAGTAGATGTAATTTAACGAAAACAAACGCTAAAACAAAAGCTAATCTAATGAAACGCGAGATAGGACGGAAATCGAAGATGCGGCCAAGATGTGTACCGAGTTTGGAACAACGATAACGAATACTCAATGGTGGTGTAAGACTCAAGCTGGAAAGCGAAAAAGCGATGCAGATTCCGGTTGCGCAGANAACACAACGGTATGTCGCTCAACAGGTCTTGCTTGTCACTCCTTTCCCTTTGCTATTGCCTGATGGTTTTACATAACTTATTATCAATTATNNCACGAACACGGGCATATATTTCACAACAACGGTACAATACGTAATAATTTCCGAGAGAAAATAAGCACAGAGNCTGTANGGGNGTGGCAACAGGAACATATTATACACNT]

[+] EMBL AL933076             [TCGCCCGAGGTTATAGGATAATCACTGCAAACTCGTCCTCATCCGTAAGCGAAGCTTTTCTTAGTGTCTCCCTTGATTGATAAAGTGGTCAGGTGTGGATTGGCACGGGAAAAGGGAATGTAATTCGGAAAACAAAGTAGCCAGGAGGGAAAGAATCTATATGTATACACAAACACACATCATTAACCCTCTCGTTCTCCCACTCTCTCTCTCTCTATCTCTTAAAACTCTCTTCGCTGTTTCATTATATCTCTTGCAAACATATTCCTTAACTCTAGTAGATGTAATTTAACGAAAACAAACGCTAAAACAAAAGCTAATCTAATGAAACGCGAGATAGGACGGAAATCGAAGATGCGGCCAAGATGTGTACCGAGTTTGGAACAACGATAACGAATACTCAATGGTGGTGTAAGACTCAAGCTGGAAAGCGAAAAAGCGATGCAGATTCCGGTTGCGCAGANAACACAACGGTATGTCGCTCAACAGGTCTTGCTTGTCACTCCTTTCCCTTTGCTATTGCCTGATGGTTTTACATAACTTATTATCAATTATNNCACGAACACGGGCATATATTTCACAACAACGGTACAATACGTAATAATTTCCGAGAGAAAATAAGCACAGAGNCTGTANGGGNGTGGCAACAGGAACATATTATACACNT]




>consensus_4044#1
TCGCCCGAGGTTATAGGATAATCACTGCAAACTCGTCCTCATCCGTAAGCGAAGCTTTTC
TTAGTGTCTCCCTTGATTGATAAAGTGGTCAGGTGTGGATTGGCACGGGAAAAGGGAATG
TAATTCGGAAAACAAAGTAGCCAGGAGGGAAAGAATCTATATGTATACACAAACACACAT
CATTAACCCTCTCGTTCTCCCACTCTCTCTCTCTCTATCTCTTAAAACTCTCTTCGCTGT
TTCATTATATCTCTTGCAAACATATTCCTTAACTCTAGTAGATGTAATTTAACGAAAACA
AACGCTAAAACAAAAGCTAATCTAATGAAACGCGAGATAGGACGGAAATCGAAGATGCGG
CCAAGATGTGTACCGAGTTTGGAACAACGATAACGAATACTCAATGGTGGTGTAAGACTC
AAGCTGGAAAGCGAAAAAGCGATGCAGATTCCGGTTGCGCAGANAACACAACGGTATGTC
GCTCAACAGGTCTTGCTTGTCACTCCTTTCCCTTTGCTATTGCCTGATGGTTTTACATAA
CTTATTATCAATTATNNCACGAACACGGGCATATATTTCACAACAACGGTACAATACGTA
ATAATTTCCGAGAGAAAATAAGCACAGAGNCTGTANGGGNGTGGCAACAGGAACATATTA
TACACNT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4044#0      AAAGAGAGGGAACTATTTGAGTGAAGCAAACGGGGCTTGTAGAGGAAAGTTTGTCCAATT 60
consensus_4044#1      ------------------------------------------------------------
                                                                                  

consensus_4044#0      TCACCAATTTCTTCGGTTCAAACAAACAGTACAGTTTATGCTCGTCTTTCCTGTGCAAAG 120
consensus_4044#1      -----------------------------------------------------------T 1
                                                                                  

consensus_4044#0      TGCGCATAAGGATAGGATAATCACTGCAAACTCGTCCTCATCCCGTAAGCGAAGCTTTTC 180
consensus_4044#1      CGCCCGAGGTTATAGGATAATCACTGCAAACTCGTCCTCATCC-GTAAGCGAAGCTTTTC 60
                       ** *      ******************************** ****************

consensus_4044#0      TTAGTGTCTCCCTTGATTGATAAAGTGGTCAGGTGTGGATTGGCACGGGAAAAGGGAATG 240
consensus_4044#1      TTAGTGTCTCCCTTGATTGATAAAGTGGTCAGGTGTGGATTGGCACGGGAAAAGGGAATG 120
                      ************************************************************

consensus_4044#0      TAATTCGGAAAACAAAGTAGCCAGGAGGGAAAGAATCTATATGTATACACAAACACACA- 299
consensus_4044#1      TAATTCGGAAAACAAAGTAGCCAGGAGGGAAAGAATCTATATGTATACACAAACACACAT 180
                      *********************************************************** 

consensus_4044#0      CATTAACCCTCTCGTTCTCCCACTCTCTCTCTCTCTATCTCTTAAA-CTCTCTTCGCT-T 357
consensus_4044#1      CATTAACCCTCTCGTTCTCCCACTCTCTCTCTCTCTATCTCTTAAAACTCTCTTCGCTGT 240
                      ********************************************** *********** *

consensus_4044#0      TTCATTATATCTCTTGCAAACATATTCCTTAACTCTAGTAG-TGTAATTTAACGAAAA-A 415
consensus_4044#1      TTCATTATATCTCTTGCAAACATATTCCTTAACTCTAGTAGATGTAATTTAACGAAAACA 300
                      ***************************************** **************** *

consensus_4044#0      AACGCTAAAACAAAAGCTAATCTAATGAAACGCGAGATAGGACGGAAATCGAAGATGCGG 475
consensus_4044#1      AACGCTAAAACAAAAGCTAATCTAATGAAACGCGAGATAGGACGGAAATCGAAGATGCGG 360
                      ************************************************************

consensus_4044#0      A-AAGATGTGTACCGAGTTTGGAA-AACGATAA-GAATACTCAATGGTGGTGTAA-ACTC 531
consensus_4044#1      CCAAGATGTGTACCGAGTTTGGAACAACGATAACGAATACTCAATGGTGGTGTAAGACTC 420
                        ********************** ******** ********************* ****

consensus_4044#0      AAGCTGGAAAGCGAAAAAGCGATG-AGATTCCGGTT-CG-AGAAAA---AAAGGTATGTT 585
consensus_4044#1      AAGCTGGAAAGCGAAAAAGCGATGCAGATTCCGGTTGCGCAGANAACACAACGGTATGTC 480
                      ************************ *********** ** *** **   ** ******* 

consensus_4044#0      GT---AAAGGTCTTGCTT-TCATC---TTTCCTTTGTT-TTGCT--GTGGTTT-ACATAA 634
consensus_4044#1      GCTCAACAGGTCTTGCTTGTCACTCCTTTCCCTTTGCTATTGCCTGATGGTTTTACATAA 540
                      *    * *********** ***     ** ****** * ****    ****** ******

consensus_4044#0      -TTATTATCA-TTATTCA--GAAAAGGGAT---TATTTTAAAAC----GTAAATTTTGTA 683
consensus_4044#1      CTTATTATCAATTATNNCACGAACACGGGCATATATTTCACAACAACGGTACAATACGTA 600
                       ********* ****     *** * **     ***** * ***    *** * *  ***

consensus_4044#0      -TAATTTT---GAGGAAATAAGCA---AGAGTGTTAGGGAGTGGAAA-AGGATT------ 729
consensus_4044#1      ATAATTTCCGAGAGAAAATAAGCACAGAGNCTGTANGGGNGTGGCAACAGGAACATATTA 660
                       ******    *** *********   **  ***  *** **** ** ****        

consensus_4044#0      -------
consensus_4044#1      TACACNT 667